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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 38  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0922
GLU 270.0174
PRO 280.0189
CYS 290.0161
VAL 300.0185
GLU 310.0181
VAL 320.0195
VAL 330.0186
PRO 340.0170
ASN 350.0125
ILE 360.0128
THR 370.0135
TYR 380.0126
GLN 390.0136
CYS 400.0120
MET 410.0126
GLU 420.0137
LEU 430.0146
ASN 440.0138
PHE 450.0117
TYR 460.0117
LYS 470.0098
ILE 480.0069
PRO 490.0093
ASP 500.0095
ASN 510.0120
LEU 520.0094
PRO 530.0076
PHE 540.0043
SER 550.0066
THR 560.0077
LYS 570.0090
ASN 580.0097
LEU 590.0077
ASP 600.0086
LEU 610.0069
SER 620.0079
PHE 630.0087
ASN 640.0085
PRO 650.0084
LEU 660.0067
ARG 670.0061
HIS 680.0064
LEU 690.0054
GLY 700.0071
SER 710.0077
TYR 720.0071
SER 730.0055
PHE 740.0039
PHE 750.0051
SER 760.0040
PHE 770.0030
PRO 780.0049
GLU 790.0063
LEU 800.0059
GLN 810.0086
VAL 820.0082
LEU 830.0058
ASP 840.0060
LEU 850.0040
SER 860.0051
ARG 870.0052
CYS 880.0047
GLU 890.0045
ILE 900.0037
GLN 910.0047
THR 920.0057
ILE 930.0054
GLU 940.0073
ASP 950.0087
GLY 960.0079
ALA 970.0063
TYR 980.0058
GLN 990.0079
SER 1000.0069
LEU 1010.0065
SER 1020.0092
HIS 1030.0091
LEU 1040.0079
SER 1050.0092
THR 1060.0080
LEU 1070.0064
ILE 1080.0058
LEU 1090.0044
THR 1100.0049
GLY 1110.0041
ASN 1120.0030
PRO 1130.0029
ILE 1140.0034
GLN 1150.0046
SER 1160.0060
LEU 1170.0057
ALA 1180.0073
LEU 1190.0084
GLY 1200.0087
ALA 1210.0069
PHE 1220.0074
SER 1230.0090
GLY 1240.0092
LEU 1250.0086
SER 1260.0106
SER 1270.0099
LEU 1280.0088
GLN 1290.0090
LYS 1300.0080
LEU 1310.0070
VAL 1320.0062
ALA 1330.0054
VAL 1340.0055
GLU 1350.0046
THR 1360.0039
ASN 1370.0043
LEU 1380.0048
ALA 1390.0048
SER 1400.0054
LEU 1410.0061
GLU 1420.0062
ASN 1430.0061
PHE 1440.0064
PRO 1450.0072
ILE 1460.0076
GLY 1470.0083
HIS 1480.0091
LEU 1490.0088
LYS 1500.0099
THR 1510.0099
LEU 1520.0082
LYS 1530.0083
GLU 1540.0077
LEU 1550.0071
ASN 1560.0067
VAL 1570.0063
ALA 1580.0063
HIS 1590.0057
ASN 1600.0054
LEU 1610.0052
ILE 1620.0059
GLN 1630.0055
SER 1640.0053
PHE 1650.0052
LYS 1660.0054
LEU 1670.0055
PRO 1680.0059
GLU 1690.0066
TYR 1700.0072
PHE 1710.0070
SER 1720.0078
ASN 1730.0084
LEU 1740.0081
THR 1750.0089
ASN 1760.0091
LEU 1770.0074
GLU 1780.0074
HIS 1790.0072
LEU 1800.0069
ASP 1810.0067
LEU 1820.0065
SER 1830.0063
SER 1840.0061
ASN 1850.0060
LYS 1860.0056
ILE 1870.0053
GLN 1880.0048
SER 1890.0045
ILE 1900.0043
TYR 1910.0045
CYS 1920.0042
THR 1930.0045
ASP 1940.0045
LEU 1950.0043
ARG 1960.0044
VAL 1970.0049
LEU 1980.0049
HIS 1990.0043
GLN 2000.0050
MET 2010.0059
PRO 2020.0056
LEU 2030.0063
LEU 2040.0061
ASN 2050.0063
LEU 2060.0058
SER 2070.0058
LEU 2080.0055
ASP 2090.0058
LEU 2100.0053
SER 2110.0055
LEU 2120.0055
ASN 2130.0052
PRO 2140.0048
MET 2150.0042
ASN 2160.0038
PHE 2170.0039
ILE 2180.0037
GLN 2190.0041
PRO 2200.0044
GLY 2210.0043
ALA 2220.0038
PHE 2230.0038
LYS 2240.0041
GLU 2250.0041
ILE 2260.0039
ARG 2270.0039
LEU 2280.0042
HIS 2290.0047
LYS 2300.0049
LEU 2310.0046
THR 2320.0049
LEU 2330.0045
ARG 2340.0055
ASN 2350.0055
ASN 2360.0045
PHE 2370.0049
ASP 2380.0052
SER 2390.0049
LEU 2400.0047
ASN 2410.0039
VAL 2420.0038
MET 2430.0042
LYS 2440.0039
THR 2450.0034
CYS 2460.0034
ILE 2470.0042
GLN 2480.0041
GLY 2490.0038
LEU 2500.0039
ALA 2510.0042
GLY 2520.0044
LEU 2530.0042
GLU 2540.0044
VAL 2550.0045
HIS 2560.0049
ARG 2570.0055
LEU 2580.0053
VAL 2590.0058
LEU 2600.0057
GLY 2610.0063
GLU 2620.0067
PHE 2630.0080
ARG 2640.0094
ASN 2650.0097
GLU 2660.0082
GLY 2670.0080
ASN 2680.0076
LEU 2690.0069
GLU 2700.0073
LYS 2710.0070
PHE 2720.0071
ASP 2730.0070
LYS 2740.0069
SER 2750.0063
ALA 2760.0062
LEU 2770.0061
GLU 2780.0059
GLY 2790.0053
LEU 2800.0056
CYS 2810.0059
ASN 2820.0052
LEU 2830.0050
THR 2840.0054
ILE 2850.0056
GLU 2860.0060
GLU 2870.0064
PHE 2880.0066
ARG 2890.0069
LEU 2900.0072
ALA 2910.0074
TYR 2920.0078
LEU 2930.0080
ASP 2940.0087
TYR 2950.0087
TYR 2960.0091
LEU 2970.0088
ASP 2980.0090
GLY 2990.0086
ILE 3000.0081
ILE 3010.0081
ASP 3020.0077
LEU 3030.0076
PHE 3040.0074
ASN 3050.0074
CYS 3060.0070
LEU 3070.0071
THR 3080.0074
ASN 3090.0074
VAL 3100.0072
SER 3110.0074
SER 3120.0074
PHE 3130.0076
SER 3140.0077
LEU 3150.0079
VAL 3160.0080
SER 3170.0082
VAL 3180.0083
THR 3190.0084
ILE 3200.0083
GLU 3210.0086
ARG 3220.0079
VAL 3230.0074
LYS 3240.0072
ASP 3250.0075
PHE 3260.0070
SER 3270.0068
TYR 3280.0070
ASN 3290.0071
PHE 3300.0073
GLY 3310.0076
TRP 3320.0077
GLN 3330.0077
HIS 3340.0077
LEU 3350.0076
GLU 3360.0076
LEU 3370.0076
VAL 3380.0079
ASN 3390.0078
CYS 3400.0077
LYS 3410.0073
PHE 3420.0070
GLY 3430.0068
GLN 3440.0061
PHE 3450.0058
PRO 3460.0061
THR 3470.0059
LEU 3480.0062
LYS 3490.0061
LEU 3500.0066
LYS 3510.0065
SER 3520.0070
LEU 3530.0069
LYS 3540.0071
ARG 3550.0072
LEU 3560.0069
THR 3570.0074
PHE 3580.0068
THR 3590.0076
SER 3600.0078
ASN 3610.0069
LYS 3620.0064
GLY 3630.0058
GLY 3640.0052
ASN 3650.0052
ALA 3660.0049
PHE 3670.0048
SER 3680.0042
GLU 3690.0040
VAL 3700.0046
ASP 3710.0047
LEU 3720.0054
PRO 3730.0054
SER 3740.0061
LEU 3750.0061
GLU 3760.0065
PHE 3770.0069
LEU 3780.0063
ASP 3790.0072
LEU 3800.0065
SER 3810.0077
ARG 3820.0085
ASN 3830.0075
GLY 3840.0074
LEU 3850.0060
SER 3860.0055
PHE 3870.0064
LYS 3880.0060
GLY 3890.0055
CYS 3900.0058
CYS 3910.0054
SER 3920.0040
GLN 3930.0035
SER 3940.0031
ASP 3950.0038
PHE 3960.0045
GLY 3970.0041
THR 3980.0047
ILE 3990.0047
SER 4000.0055
LEU 4010.0058
LYS 4020.0060
TYR 4030.0070
LEU 4040.0066
ASP 4050.0077
LEU 4060.0074
SER 4070.0095
PHE 4080.0106
ASN 4090.0096
GLY 4100.0096
VAL 4110.0091
ILE 4120.0086
THR 4130.0082
MET 4140.0074
SER 4150.0065
SER 4160.0054
ASN 4170.0052
PHE 4180.0048
LEU 4190.0035
GLY 4200.0031
LEU 4210.0043
GLU 4220.0039
GLN 4230.0046
LEU 4240.0055
GLU 4250.0063
HIS 4260.0072
LEU 4270.0078
ASP 4280.0092
PHE 4290.0097
GLN 4300.0114
HIS 4310.0124
SER 4320.0111
ASN 4330.0114
LEU 4340.0102
LYS 4350.0101
GLN 4360.0094
MET 4370.0091
SER 4380.0094
GLU 4390.0091
PHE 4400.0076
SER 4410.0064
VAL 4420.0069
PHE 4430.0060
LEU 4440.0050
SER 4450.0040
LEU 4460.0046
ARG 4470.0035
ASN 4480.0044
LEU 4490.0056
ILE 4500.0063
TYR 4510.0076
LEU 4520.0084
ASP 4530.0100
ILE 4540.0105
SER 4550.0119
HIS 4560.0133
THR 4570.0127
HIS 4580.0133
THR 4590.0118
ARG 4600.0119
VAL 4610.0102
ALA 4620.0106
PHE 4630.0091
ASN 4640.0075
GLY 4650.0065
ILE 4660.0071
PHE 4670.0063
ASN 4680.0052
GLY 4690.0040
LEU 4700.0043
SER 4710.0028
SER 4720.0037
LEU 4730.0052
GLU 4740.0061
VAL 4750.0078
LEU 4760.0080
LYS 4770.0099
MET 4780.0104
ALA 4790.0119
GLY 4800.0135
ASN 4810.0128
SER 4820.0133
PHE 4830.0121
GLN 4840.0137
GLU 4850.0147
ASN 4860.0127
PHE 4870.0107
LEU 4880.0084
PRO 4890.0084
ASP 4900.0065
ILE 4910.0066
PHE 4920.0041
THR 4930.0035
GLU 4940.0027
LEU 4950.0025
ARG 4960.0017
ASN 4970.0037
LEU 4980.0045
THR 4990.0066
PHE 5000.0078
LEU 5010.0070
ASP 5020.0092
LEU 5030.0091
SER 5040.0109
GLN 5050.0129
CYS 5060.0119
GLN 5070.0130
LEU 5080.0104
GLU 5090.0105
GLN 5100.0091
LEU 5110.0070
SER 5120.0080
PRO 5130.0072
THR 5140.0067
ALA 5150.0048
PHE 5160.0023
ASN 5170.0043
SER 5180.0036
LEU 5190.0025
SER 5200.0054
SER 5210.0064
LEU 5220.0057
GLN 5230.0087
VAL 5240.0086
LEU 5250.0063
ASN 5260.0084
MET 5270.0075
SER 5280.0100
HIS 5290.0122
ASN 5300.0108
ASN 5310.0111
PHE 5320.0083
PHE 5330.0079
SER 5340.0052
LEU 5350.0026
ASP 5360.0048
THR 5370.0054
PHE 5380.0078
PRO 5390.0053
TYR 5400.0050
LYS 5410.0088
CYS 5420.0079
LEU 5430.0066
ASN 5440.0099
SER 5450.0101
LEU 5460.0085
GLN 5470.0116
VAL 5480.0103
LEU 5490.0071
ASP 5500.0083
TYR 5510.0069
SER 5520.0100
LEU 5530.0117
ASN 5540.0096
HIS 5550.0090
ILE 5560.0055
MET 5570.0048
THR 5580.0042
SER 5590.0055
LYS 5600.0093
LYS 5610.0106
GLN 5620.0119
GLU 5630.0120
LEU 5640.0097
GLN 5650.0133
HIS 5660.0116
PHE 5670.0096
PRO 5680.0114
SER 5690.0148
SER 5700.0141
LEU 5710.0120
ALA 5720.0146
PHE 5730.0128
LEU 5740.0094
ASN 5750.0100
LEU 5760.0078
THR 5770.0109
GLN 5780.0116
ASN 5790.0084
ASP 5800.0085
PHE 5810.0053
ALA 5820.0044
CYS 5830.0028
THR 5840.0032
CYS 5850.0064
GLU 5860.0089
HIS 5870.0061
GLN 5880.0078
SER 5890.0103
PHE 5900.0068
LEU 5910.0067
GLN 5920.0110
TRP 5930.0110
ILE 5940.0097
LYS 5950.0135
ASP 5960.0157
GLN 5970.0137
ARG 5980.0152
GLN 5990.0176
LEU 6000.0139
LEU 6010.0129
VAL 6020.0132
GLU 6030.0145
VAL 6040.0142
GLU 6050.0156
ARG 6060.0143
MET 6070.0114
GLU 6080.0116
CYS 6090.0087
ALA 6100.0102
THR 6110.0092
PRO 6120.0083
SER 6130.0123
ASP 6140.0114
LYS 6150.0095
GLN 6160.0121
GLY 6170.0147
MET 6180.0133
PRO 6190.0132
VAL 6200.0096
LEU 6210.0128
SER 6220.0150
LEU 6230.0106
ASN 6240.0109
ILE 6250.0108
THR 6260.0121
CYS 6270.0105
GLU 10.0064
ALA 20.0083
ALA 30.0077
ALA 40.0037
LYS 50.0032
MET 60.0055
GLN 70.0063
ARG 80.0045
LEU 90.0037
VAL 100.0076
LEU 110.0082
LEU 120.0069
LEU 130.0066
ALA 140.0090
ILE 150.0095
SER 160.0078
LEU 170.0077
LEU 180.0079
LEU 190.0078
TYR 200.0075
GLN 210.0066
ASP 220.0062
LEU 230.0067
PRO 240.0066
VAL 250.0071
ARG 260.0079
SER 270.0076
GLU 280.0076
PHE 290.0074
GLU 300.0073
LEU 310.0074
ASP 320.0067
ARG 330.0061
ILE 340.0069
CYS 350.0072
GLY 360.0056
TYR 370.0052
GLY 380.0060
THR 390.0067
ALA 400.0069
ARG 410.0057
CYS 420.0051
ARG 430.0039
LYS 440.0036
LYS 450.0050
CYS 460.0071
ARG 470.0072
SER 480.0082
GLN 490.0081
GLU 500.0078
TYR 510.0083
ARG 520.0080
ILE 530.0091
GLY 540.0090
ARG 550.0082
CYS 560.0073
PRO 570.0079
ASN 580.0062
THR 590.0061
TYR 600.0051
ALA 610.0062
CYS 620.0065
CYS 630.0061
LEU 640.0068
ARG 650.0070
LYS 660.0078
TRP 670.0077
ASP 680.0072
GLU 690.0064
SER 700.0068
LEU 710.0079
LEU 720.0074
ASN 730.0062
ARG 740.0072
THR 750.0085
LYS 760.0085
PRO 770.0086
GLU 780.0072
ALA 790.0077
ALA 800.0091
ALA 810.0117
LYS 820.0052
LYS 830.0070
GLU 840.0083
MET 850.0046
ASN 860.0095
LEU 870.0055
SER 880.0071
VAL 890.0040
GLY 900.0067
LEU 910.0053
GLY 920.0098
GLY 930.0139
GLY 940.0183
SER 950.0146
ASN 960.0137
LEU 970.0112
SER 980.0125
VAL 990.0113
GLY 1000.0137
LEU 1010.0138
GLY 1020.0278
GLU 1030.0369
ILE 1040.0575
GLY 1050.0738
GLY 1060.0922
GLY 1070.0718
SER 1080.0542
LYS 1090.0311
LEU 1100.0143
LEU 1110.0106
ASP 1120.0147
ILE 1130.0118
ASN 1140.0168
LEU 1150.0137
GLY 1160.0157
ARG 1170.0182
GLY 1180.0118
GLY 1190.0162
GLY 1200.0168
SER 1210.0106
MET 1220.0101
VAL 1230.0064
ASP 1240.0057
LEU 1250.0030
THR 1260.0032
PHE 1270.0049
GLY 1280.0060
GLY 1290.0076
VAL 1300.0094
GLY 1310.0178
GLY 1320.0205
GLY 1330.0202
SER 1340.0177
THR 1350.0154
PHE 1360.0102
THR 1370.0075
PHE 1380.0037
PHE 1390.0016
PRO 1400.0035
LEU 1410.0079
VAL 1420.0129
ILE 1430.0176
GLY 1440.0232
GLY 1450.0286
GLY 1460.0322
SER 1470.0290
ASP 1480.0239
ALA 1490.0214
MET 1500.0154
TYR 1510.0128
LEU 1520.0095
GLY 1530.0089
PHE 1540.0096
ALA 1550.0113
ALA 1560.0178
GLY 1570.0194
GLY 1580.0240
GLY 1590.0235
SER 1600.0235
ALA 1610.0187
GLY 1620.0160
GLY 1630.0120
GLU 1640.0073
ASN 1650.0055
HIS 1660.0046
VAL 1670.0047
ALA 1680.0080
PHE 1690.0102
GLY 1700.0133
PRO 1710.0247
GLY 1720.0219
PRO 1730.0190
GLY 1740.0126
VAL 1750.0094
ASP 1760.0062
LEU 1770.0044
THR 1780.0064
PHE 1790.0083
GLY 1800.0117
GLY 1810.0132
VAL 1820.0138
GLN 1830.0106
PHE 1840.0093
ALA 1850.0076
MET 1860.0071
VAL 1870.0171
ASN 1880.0228
ASN 1890.0389
GLY 1900.0444
PRO 1910.0572
GLY 1920.0675
PRO 1930.0521
GLY 1940.0161
GLU 1950.0051
SER 1960.0516
PHE 1970.0478
THR 1980.0201
ALA 1990.0265
GLN 2000.0107
PRO 2010.0279
ALA 2020.0305
ASP 2030.0230
MET 2040.0142
GLN 2050.0164
ALA 2060.0305
GLY 2070.0172
ILE 2080.0177
LYS 2090.0104
GLY 2100.0187
PRO 2110.0210
GLY 2120.0196
PRO 2130.0349
GLY 2140.0208
GLY 2150.0124
SER 2160.0171
ILE 2170.0149
GLN 2180.0191
VAL 2190.0132
ILE 2200.0191
ASN 2210.0188
GLY 2220.0164
SER 2230.0160
THR 2240.0142
ILE 2250.0128
GLY 2260.0154
THR 2270.0150
GLY 2280.0126
SER 2290.0100
LYS 2300.0071
LYS 2310.0070
THR 2320.0062
ILE 2330.0058
LEU 2340.0057
ILE 2350.0051
TYR 2360.0047
SER 2370.0062
ILE 2380.0093
ILE 2390.0102
GLY 2400.0134
VAL 2410.0140
LYS 2420.0130
LYS 2430.0125
GLY 2440.0128
THR 2450.0132
LEU 2460.0130
ALA 2470.0109
TRP 2480.0079
ALA 2490.0069
ARG 2500.0050
THR 2510.0070
GLY 2520.0074
PHE 2530.0065
SER 2540.0065
PRO 2550.0064
ALA 2560.0068
LYS 2570.0082
LYS 2580.0055
LEU 2590.0130
ASN 2600.0186
ALA 2610.0366
GLY 2620.0250
VAL 2630.0242
VAL 2640.0200
ARG 2650.0090
VAL 2660.0095
PHE 2670.0055
PHE 2680.0036
LEU 2690.0085
ASN 2700.0116
GLN 2710.0128
LYS 2720.0130
LYS 2730.0127
ALA 2740.0127
LYS 2750.0132
ASP 2760.0150
VAL 2770.0131
LEU 2780.0113
ARG 2790.0120
LYS 2800.0133
THR 2810.0134
SER 2820.0188
ARG 2830.0134
PRO 2840.0304
MET 2850.0419
VAL 2860.0316
ASP 2870.0261
LEU 2880.0283
THR 2890.0186
PHE 2900.0124
GLY 2910.0168
GLY 2920.0196

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.