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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 39  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0731
GLU 270.0106
PRO 280.0124
CYS 290.0107
VAL 300.0128
GLU 310.0126
VAL 320.0140
VAL 330.0138
PRO 340.0125
ASN 350.0096
ILE 360.0102
THR 370.0099
TYR 380.0088
GLN 390.0095
CYS 400.0083
MET 410.0092
GLU 420.0106
LEU 430.0109
ASN 440.0108
PHE 450.0087
TYR 460.0091
LYS 470.0069
ILE 480.0041
PRO 490.0049
ASP 500.0041
ASN 510.0056
LEU 520.0048
PRO 530.0047
PHE 540.0040
SER 550.0068
THR 560.0064
LYS 570.0076
ASN 580.0073
LEU 590.0053
ASP 600.0058
LEU 610.0047
SER 620.0057
PHE 630.0071
ASN 640.0070
PRO 650.0076
LEU 660.0060
ARG 670.0063
HIS 680.0062
LEU 690.0049
GLY 700.0062
SER 710.0067
TYR 720.0059
SER 730.0042
PHE 740.0030
PHE 750.0043
SER 760.0026
PHE 770.0033
PRO 780.0057
GLU 790.0068
LEU 800.0054
GLN 810.0067
VAL 820.0055
LEU 830.0035
ASP 840.0033
LEU 850.0020
SER 860.0030
ARG 870.0041
CYS 880.0041
GLU 890.0050
ILE 900.0042
GLN 910.0056
THR 920.0061
ILE 930.0052
GLU 940.0067
ASP 950.0077
GLY 960.0070
ALA 970.0054
TYR 980.0049
GLN 990.0068
SER 1000.0063
LEU 1010.0057
SER 1020.0077
HIS 1030.0075
LEU 1040.0059
SER 1050.0063
THR 1060.0047
LEU 1070.0034
ILE 1080.0026
LEU 1090.0017
THR 1100.0020
GLY 1110.0025
ASN 1120.0029
PRO 1130.0040
ILE 1140.0040
GLN 1150.0056
SER 1160.0062
LEU 1170.0054
ALA 1180.0067
LEU 1190.0071
GLY 1200.0073
ALA 1210.0058
PHE 1220.0055
SER 1230.0070
GLY 1240.0072
LEU 1250.0064
SER 1260.0079
SER 1270.0065
LEU 1280.0054
GLN 1290.0050
LYS 1300.0040
LEU 1310.0033
VAL 1320.0027
ALA 1330.0021
VAL 1340.0020
GLU 1350.0019
THR 1360.0018
ASN 1370.0019
LEU 1380.0019
ALA 1390.0020
SER 1400.0022
LEU 1410.0026
GLU 1420.0030
ASN 1430.0035
PHE 1440.0034
PRO 1450.0042
ILE 1460.0042
GLY 1470.0048
HIS 1480.0056
LEU 1490.0051
LYS 1500.0057
THR 1510.0057
LEU 1520.0039
LYS 1530.0038
GLU 1540.0033
LEU 1550.0030
ASN 1560.0027
VAL 1570.0023
ALA 1580.0025
HIS 1590.0025
ASN 1600.0022
LEU 1610.0022
ILE 1620.0028
GLN 1630.0029
SER 1640.0027
PHE 1650.0025
LYS 1660.0025
LEU 1670.0021
PRO 1680.0025
GLU 1690.0029
TYR 1700.0035
PHE 1710.0032
SER 1720.0037
ASN 1730.0042
LEU 1740.0039
THR 1750.0045
ASN 1760.0045
LEU 1770.0030
GLU 1780.0030
HIS 1790.0028
LEU 1800.0026
ASP 1810.0026
LEU 1820.0026
SER 1830.0028
SER 1840.0030
ASN 1850.0030
LYS 1860.0033
ILE 1870.0036
GLN 1880.0042
SER 1890.0041
ILE 1900.0036
TYR 1910.0041
CYS 1920.0039
THR 1930.0035
ASP 1940.0030
LEU 1950.0028
ARG 1960.0028
VAL 1970.0022
LEU 1980.0026
HIS 1990.0030
GLN 2000.0028
MET 2010.0033
PRO 2020.0033
LEU 2030.0034
LEU 2040.0028
ASN 2050.0029
LEU 2060.0024
SER 2070.0021
LEU 2080.0020
ASP 2090.0021
LEU 2100.0024
SER 2110.0025
LEU 2120.0032
ASN 2130.0034
PRO 2140.0041
MET 2150.0039
ASN 2160.0047
PHE 2170.0048
ILE 2180.0042
GLN 2190.0050
PRO 2200.0053
GLY 2210.0053
ALA 2220.0044
PHE 2230.0039
LYS 2240.0049
GLU 2250.0051
ILE 2260.0040
ARG 2270.0037
LEU 2280.0029
HIS 2290.0030
LYS 2300.0024
LEU 2310.0020
THR 2320.0014
LEU 2330.0017
ARG 2340.0019
ASN 2350.0028
ASN 2360.0031
PHE 2370.0036
ASP 2380.0045
SER 2390.0045
LEU 2400.0039
ASN 2410.0047
VAL 2420.0045
MET 2430.0035
LYS 2440.0040
THR 2450.0047
CYS 2460.0039
ILE 2470.0035
GLN 2480.0046
GLY 2490.0046
LEU 2500.0038
ALA 2510.0048
GLY 2520.0052
LEU 2530.0042
GLU 2540.0043
VAL 2550.0035
HIS 2560.0038
ARG 2570.0034
LEU 2580.0025
VAL 2590.0019
LEU 2600.0014
GLY 2610.0014
GLU 2620.0023
PHE 2630.0033
ARG 2640.0042
ASN 2650.0051
GLU 2660.0047
GLY 2670.0047
ASN 2680.0040
LEU 2690.0036
GLU 2700.0042
LYS 2710.0035
PHE 2720.0025
ASP 2730.0026
LYS 2740.0024
SER 2750.0033
ALA 2760.0027
LEU 2770.0027
GLU 2780.0037
GLY 2790.0040
LEU 2800.0035
CYS 2810.0046
ASN 2820.0051
LEU 2830.0045
THR 2840.0048
ILE 2850.0041
GLU 2860.0048
GLU 2870.0043
PHE 2880.0034
ARG 2890.0029
LEU 2900.0021
ALA 2910.0023
TYR 2920.0022
LEU 2930.0020
ASP 2940.0031
TYR 2950.0028
TYR 2960.0028
LEU 2970.0020
ASP 2980.0021
GLY 2990.0016
ILE 3000.0017
ILE 3010.0019
ASP 3020.0025
LEU 3030.0020
PHE 3040.0026
ASN 3050.0033
CYS 3060.0037
LEU 3070.0036
THR 3080.0043
ASN 3090.0052
VAL 3100.0048
SER 3110.0056
SER 3120.0052
PHE 3130.0043
SER 3140.0041
LEU 3150.0034
VAL 3160.0037
SER 3170.0033
VAL 3180.0026
THR 3190.0028
ILE 3200.0024
GLU 3210.0027
ARG 3220.0023
VAL 3230.0025
LYS 3240.0023
ASP 3250.0023
PHE 3260.0030
SER 3270.0029
TYR 3280.0031
ASN 3290.0039
PHE 3300.0042
GLY 3310.0051
TRP 3320.0052
GLN 3330.0060
HIS 3340.0058
LEU 3350.0050
GLU 3360.0050
LEU 3370.0046
VAL 3380.0050
ASN 3390.0049
CYS 3400.0040
LYS 3410.0037
PHE 3420.0033
GLY 3430.0032
GLN 3440.0035
PHE 3450.0038
PRO 3460.0033
THR 3470.0032
LEU 3480.0037
LYS 3490.0038
LEU 3500.0044
LYS 3510.0048
SER 3520.0056
LEU 3530.0054
LYS 3540.0062
ARG 3550.0061
LEU 3560.0055
THR 3570.0060
PHE 3580.0054
THR 3590.0061
SER 3600.0062
ASN 3610.0052
LYS 3620.0048
GLY 3630.0040
GLY 3640.0039
ASN 3650.0046
ALA 3660.0045
PHE 3670.0042
SER 3680.0037
GLU 3690.0036
VAL 3700.0038
ASP 3710.0039
LEU 3720.0045
PRO 3730.0048
SER 3740.0054
LEU 3750.0055
GLU 3760.0061
PHE 3770.0064
LEU 3780.0059
ASP 3790.0063
LEU 3800.0058
SER 3810.0066
ARG 3820.0071
ASN 3830.0064
GLY 3840.0062
LEU 3850.0052
SER 3860.0046
PHE 3870.0046
LYS 3880.0042
GLY 3890.0036
CYS 3900.0038
CYS 3910.0037
SER 3920.0034
GLN 3930.0035
SER 3940.0033
ASP 3950.0037
PHE 3960.0042
GLY 3970.0040
THR 3980.0045
ILE 3990.0046
SER 4000.0053
LEU 4010.0054
LYS 4020.0056
TYR 4030.0059
LEU 4040.0055
ASP 4050.0061
LEU 4060.0058
SER 4070.0063
PHE 4080.0072
ASN 4090.0066
GLY 4100.0064
VAL 4110.0056
ILE 4120.0051
THR 4130.0046
MET 4140.0038
SER 4150.0032
SER 4160.0027
ASN 4170.0026
PHE 4180.0031
LEU 4190.0026
GLY 4200.0032
LEU 4210.0038
GLU 4220.0035
GLN 4230.0043
LEU 4240.0045
GLU 4250.0049
HIS 4260.0053
LEU 4270.0050
ASP 4280.0057
PHE 4290.0057
GLN 4300.0065
HIS 4310.0071
SER 4320.0063
ASN 4330.0061
LEU 4340.0052
LYS 4350.0050
GLN 4360.0042
MET 4370.0039
SER 4380.0038
GLU 4390.0036
PHE 4400.0026
SER 4410.0019
VAL 4420.0027
PHE 4430.0026
LEU 4440.0017
SER 4450.0021
LEU 4460.0028
ARG 4470.0027
ASN 4480.0038
LEU 4490.0038
ILE 4500.0044
TYR 4510.0048
LEU 4520.0044
ASP 4530.0052
ILE 4540.0051
SER 4550.0059
HIS 4560.0066
THR 4570.0059
HIS 4580.0060
THR 4590.0052
ARG 4600.0051
VAL 4610.0042
ALA 4620.0045
PHE 4630.0035
ASN 4640.0026
GLY 4650.0018
ILE 4660.0021
PHE 4670.0016
ASN 4680.0008
GLY 4690.0013
LEU 4700.0020
SER 4710.0024
SER 4720.0034
LEU 4730.0031
GLU 4740.0039
VAL 4750.0043
LEU 4760.0036
LYS 4770.0045
MET 4780.0044
ALA 4790.0053
GLY 4800.0062
ASN 4810.0057
SER 4820.0060
PHE 4830.0053
GLN 4840.0065
GLU 4850.0074
ASN 4860.0062
PHE 4870.0054
LEU 4880.0038
PRO 4890.0039
ASP 4900.0032
ILE 4910.0022
PHE 4920.0011
THR 4930.0023
GLU 4940.0019
LEU 4950.0018
ARG 4960.0032
ASN 4970.0039
LEU 4980.0031
THR 4990.0042
PHE 5000.0040
LEU 5010.0028
ASP 5020.0037
LEU 5030.0034
SER 5040.0045
GLN 5050.0057
CYS 5060.0052
GLN 5070.0060
LEU 5080.0048
GLU 5090.0056
GLN 5100.0053
LEU 5110.0042
SER 5120.0050
PRO 5130.0054
THR 5140.0050
ALA 5150.0033
PHE 5160.0028
ASN 5170.0044
SER 5180.0042
LEU 5190.0035
SER 5200.0052
SER 5210.0053
LEU 5220.0041
GLN 5230.0051
VAL 5240.0041
LEU 5250.0024
ASN 5260.0029
MET 5270.0024
SER 5280.0037
HIS 5290.0051
ASN 5300.0048
ASN 5310.0056
PHE 5320.0047
PHE 5330.0055
SER 5340.0048
LEU 5350.0036
ASP 5360.0047
THR 5370.0048
PHE 5380.0062
PRO 5390.0048
TYR 5400.0044
LYS 5410.0065
CYS 5420.0063
LEU 5430.0053
ASN 5440.0070
SER 5450.0066
LEU 5460.0051
GLN 5470.0058
VAL 5480.0045
LEU 5490.0026
ASP 5500.0025
TYR 5510.0020
SER 5520.0033
LEU 5530.0044
ASN 5540.0041
HIS 5550.0047
ILE 5560.0036
MET 5570.0045
THR 5580.0050
SER 5590.0054
LYS 5600.0073
LYS 5610.0077
GLN 5620.0081
GLU 5630.0080
LEU 5640.0065
GLN 5650.0079
HIS 5660.0074
PHE 5670.0059
PRO 5680.0069
SER 5690.0082
SER 5700.0077
LEU 5710.0061
ALA 5720.0061
PHE 5730.0047
LEU 5740.0030
ASN 5750.0027
LEU 5760.0019
THR 5770.0030
GLN 5780.0039
ASN 5790.0033
ASP 5800.0043
PHE 5810.0033
ALA 5820.0042
CYS 5830.0029
THR 5840.0044
CYS 5850.0049
GLU 5860.0066
HIS 5870.0053
GLN 5880.0048
SER 5890.0058
PHE 5900.0044
LEU 5910.0031
GLN 5920.0044
TRP 5930.0048
ILE 5940.0033
LYS 5950.0042
ASP 5960.0058
GLN 5970.0050
ARG 5980.0047
GLN 5990.0061
LEU 6000.0047
LEU 6010.0037
VAL 6020.0030
GLU 6030.0036
VAL 6040.0035
GLU 6050.0042
ARG 6060.0039
MET 6070.0029
GLU 6080.0037
CYS 6090.0035
ALA 6100.0049
THR 6110.0054
PRO 6120.0051
SER 6130.0064
ASP 6140.0058
LYS 6150.0046
GLN 6160.0056
GLY 6170.0056
MET 6180.0043
PRO 6190.0035
VAL 6200.0020
LEU 6210.0027
SER 6220.0037
LEU 6230.0019
ASN 6240.0020
ILE 6250.0033
THR 6260.0039
CYS 6270.0057
GLU 10.0063
ALA 20.0078
ALA 30.0082
ALA 40.0063
LYS 50.0058
MET 60.0072
GLN 70.0075
ARG 80.0060
LEU 90.0059
VAL 100.0079
LEU 110.0075
LEU 120.0065
LEU 130.0066
ALA 140.0079
ILE 150.0079
SER 160.0068
LEU 170.0069
LEU 180.0068
LEU 190.0068
TYR 200.0069
GLN 210.0061
ASP 220.0057
LEU 230.0061
PRO 240.0065
VAL 250.0071
ARG 260.0080
SER 270.0074
GLU 280.0084
PHE 290.0084
GLU 300.0073
LEU 310.0074
ASP 320.0078
ARG 330.0070
ILE 340.0069
CYS 350.0073
GLY 360.0065
TYR 370.0063
GLY 380.0058
THR 390.0057
ALA 400.0061
ARG 410.0055
CYS 420.0062
ARG 430.0051
LYS 440.0056
LYS 450.0040
CYS 460.0030
ARG 470.0026
SER 480.0033
GLN 490.0038
GLU 500.0037
TYR 510.0044
ARG 520.0052
ILE 530.0071
GLY 540.0082
ARG 550.0088
CYS 560.0089
PRO 570.0106
ASN 580.0102
THR 590.0100
TYR 600.0081
ALA 610.0063
CYS 620.0059
CYS 630.0042
LEU 640.0042
ARG 650.0034
LYS 660.0035
TRP 670.0032
ASP 680.0030
GLU 690.0028
SER 700.0032
LEU 710.0042
LEU 720.0043
ASN 730.0035
ARG 740.0038
THR 750.0048
LYS 760.0050
PRO 770.0046
GLU 780.0041
ALA 790.0046
ALA 800.0046
ALA 810.0133
LYS 820.0141
LYS 830.0139
GLU 840.0168
MET 850.0162
ASN 860.0170
LEU 870.0121
SER 880.0127
VAL 890.0090
GLY 900.0117
LEU 910.0112
GLY 920.0168
GLY 930.0214
GLY 940.0247
SER 950.0197
ASN 960.0173
LEU 970.0147
SER 980.0174
VAL 990.0163
GLY 1000.0202
LEU 1010.0167
GLY 1020.0208
GLU 1030.0184
ILE 1040.0245
GLY 1050.0263
GLY 1060.0301
GLY 1070.0260
SER 1080.0208
LYS 1090.0132
LEU 1100.0100
LEU 1110.0115
ASP 1120.0147
ILE 1130.0104
ASN 1140.0144
LEU 1150.0100
GLY 1160.0091
ARG 1170.0108
GLY 1180.0079
GLY 1190.0164
GLY 1200.0202
SER 1210.0129
MET 1220.0129
VAL 1230.0069
ASP 1240.0082
LEU 1250.0049
THR 1260.0094
PHE 1270.0116
GLY 1280.0167
GLY 1290.0185
VAL 1300.0219
GLY 1310.0289
GLY 1320.0270
GLY 1330.0219
SER 1340.0193
THR 1350.0134
PHE 1360.0091
THR 1370.0086
PHE 1380.0079
PHE 1390.0136
PRO 1400.0148
LEU 1410.0184
VAL 1420.0228
ILE 1430.0270
GLY 1440.0329
GLY 1450.0367
GLY 1460.0395
SER 1470.0337
ASP 1480.0251
ALA 1490.0240
MET 1500.0176
TYR 1510.0169
LEU 1520.0140
GLY 1530.0167
PHE 1540.0153
ALA 1550.0175
ALA 1560.0201
GLY 1570.0185
GLY 1580.0206
GLY 1590.0171
SER 1600.0184
ALA 1610.0157
GLY 1620.0177
GLY 1630.0152
GLU 1640.0126
ASN 1650.0069
HIS 1660.0069
VAL 1670.0056
ALA 1680.0108
PHE 1690.0131
GLY 1700.0188
PRO 1710.0244
GLY 1720.0238
PRO 1730.0233
GLY 1740.0188
VAL 1750.0154
ASP 1760.0122
LEU 1770.0079
THR 1780.0067
PHE 1790.0039
GLY 1800.0073
GLY 1810.0066
VAL 1820.0045
GLN 1830.0064
PHE 1840.0072
ALA 1850.0108
MET 1860.0129
VAL 1870.0104
ASN 1880.0164
ASN 1890.0273
GLY 1900.0328
PRO 1910.0394
GLY 1920.0490
PRO 1930.0481
GLY 1940.0285
GLU 1950.0190
SER 1960.0731
PHE 1970.0699
THR 1980.0469
ALA 1990.0381
GLN 2000.0428
PRO 2010.0171
ALA 2020.0391
ASP 2030.0374
MET 2040.0402
GLN 2050.0346
ALA 2060.0403
GLY 2070.0289
ILE 2080.0210
LYS 2090.0114
GLY 2100.0094
PRO 2110.0233
GLY 2120.0313
PRO 2130.0188
GLY 2140.0301
GLY 2150.0333
SER 2160.0513
ILE 2170.0495
GLN 2180.0300
VAL 2190.0336
ILE 2200.0464
ASN 2210.0402
GLY 2220.0351
SER 2230.0419
THR 2240.0367
ILE 2250.0312
GLY 2260.0340
THR 2270.0316
GLY 2280.0232
SER 2290.0222
LYS 2300.0196
LYS 2310.0188
THR 2320.0196
ILE 2330.0159
LEU 2340.0157
ILE 2350.0148
TYR 2360.0073
SER 2370.0089
ILE 2380.0073
ILE 2390.0060
GLY 2400.0080
VAL 2410.0084
LYS 2420.0080
LYS 2430.0092
GLY 2440.0090
THR 2450.0074
LEU 2460.0075
ALA 2470.0037
TRP 2480.0075
ALA 2490.0106
ARG 2500.0160
THR 2510.0187
GLY 2520.0208
PHE 2530.0196
SER 2540.0231
PRO 2550.0215
ALA 2560.0267
LYS 2570.0264
LYS 2580.0242
LEU 2590.0263
ASN 2600.0268
ALA 2610.0301
GLY 2620.0258
VAL 2630.0235
VAL 2640.0168
ARG 2650.0153
VAL 2660.0087
PHE 2670.0061
PHE 2680.0102
LEU 2690.0061
ASN 2700.0086
GLN 2710.0070
LYS 2720.0069
LYS 2730.0070
ALA 2740.0067
LYS 2750.0063
ASP 2760.0066
VAL 2770.0037
LEU 2780.0026
ARG 2790.0038
LYS 2800.0052
THR 2810.0097
SER 2820.0226
ARG 2830.0222
PRO 2840.0368
MET 2850.0465
VAL 2860.0435
ASP 2870.0319
LEU 2880.0281
THR 2890.0165
PHE 2900.0162
GLY 2910.0103
GLY 2920.0203

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.