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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 40  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1042
GLU 270.0114
PRO 280.0126
CYS 290.0118
VAL 300.0140
GLU 310.0145
VAL 320.0152
VAL 330.0157
PRO 340.0155
ASN 350.0134
ILE 360.0128
THR 370.0116
TYR 380.0105
GLN 390.0107
CYS 400.0094
MET 410.0102
GLU 420.0115
LEU 430.0113
ASN 440.0107
PHE 450.0081
TYR 460.0075
LYS 470.0048
ILE 480.0032
PRO 490.0049
ASP 500.0042
ASN 510.0069
LEU 520.0080
PRO 530.0095
PHE 540.0089
SER 550.0109
THR 560.0094
LYS 570.0090
ASN 580.0081
LEU 590.0066
ASP 600.0067
LEU 610.0057
SER 620.0066
PHE 630.0082
ASN 640.0077
PRO 650.0080
LEU 660.0058
ARG 670.0065
HIS 680.0055
LEU 690.0037
GLY 700.0045
SER 710.0052
TYR 720.0045
SER 730.0022
PHE 740.0028
PHE 750.0046
SER 760.0048
PHE 770.0059
PRO 780.0077
GLU 790.0086
LEU 800.0064
GLN 810.0063
VAL 820.0046
LEU 830.0030
ASP 840.0032
LEU 850.0027
SER 860.0041
ARG 870.0055
CYS 880.0052
GLU 890.0063
ILE 900.0051
GLN 910.0065
THR 920.0064
ILE 930.0051
GLU 940.0060
ASP 950.0070
GLY 960.0061
ALA 970.0042
TYR 980.0038
GLN 990.0059
SER 1000.0061
LEU 1010.0054
SER 1020.0071
HIS 1030.0068
LEU 1040.0046
SER 1050.0041
THR 1060.0022
LEU 1070.0013
ILE 1080.0013
LEU 1090.0021
THR 1100.0029
GLY 1110.0042
ASN 1120.0049
PRO 1130.0063
ILE 1140.0059
GLN 1150.0074
SER 1160.0072
LEU 1170.0064
ALA 1180.0072
LEU 1190.0073
GLY 1200.0069
ALA 1210.0054
PHE 1220.0045
SER 1230.0060
GLY 1240.0060
LEU 1250.0048
SER 1260.0061
SER 1270.0042
LEU 1280.0030
GLN 1290.0017
LYS 1300.0007
LEU 1310.0012
VAL 1320.0015
ALA 1330.0023
VAL 1340.0027
GLU 1350.0037
THR 1360.0038
ASN 1370.0043
LEU 1380.0040
ALA 1390.0046
SER 1400.0041
LEU 1410.0034
GLU 1420.0041
ASN 1430.0047
PHE 1440.0040
PRO 1450.0040
ILE 1460.0031
GLY 1470.0034
HIS 1480.0037
LEU 1490.0030
LYS 1500.0028
THR 1510.0024
LEU 1520.0013
LYS 1530.0009
GLU 1540.0010
LEU 1550.0014
ASN 1560.0016
VAL 1570.0027
ALA 1580.0030
HIS 1590.0037
ASN 1600.0039
LEU 1610.0043
ILE 1620.0037
GLN 1630.0041
SER 1640.0035
PHE 1650.0029
LYS 1660.0025
LEU 1670.0023
PRO 1680.0024
GLU 1690.0019
TYR 1700.0023
PHE 1710.0014
SER 1720.0012
ASN 1730.0017
LEU 1740.0013
THR 1750.0012
ASN 1760.0012
LEU 1770.0017
GLU 1780.0020
HIS 1790.0017
LEU 1800.0018
ASP 1810.0020
LEU 1820.0026
SER 1830.0030
SER 1840.0038
ASN 1850.0038
LYS 1860.0043
ILE 1870.0042
GLN 1880.0050
SER 1890.0048
ILE 1900.0043
TYR 1910.0046
CYS 1920.0046
THR 1930.0038
ASP 1940.0032
LEU 1950.0030
ARG 1960.0029
VAL 1970.0021
LEU 1980.0026
HIS 1990.0034
GLN 2000.0029
MET 2010.0031
PRO 2020.0040
LEU 2030.0041
LEU 2040.0031
ASN 2050.0032
LEU 2060.0024
SER 2070.0024
LEU 2080.0020
ASP 2090.0020
LEU 2100.0026
SER 2110.0030
LEU 2120.0043
ASN 2130.0043
PRO 2140.0054
MET 2150.0052
ASN 2160.0063
PHE 2170.0063
ILE 2180.0057
GLN 2190.0063
PRO 2200.0069
GLY 2210.0066
ALA 2220.0055
PHE 2230.0051
LYS 2240.0065
GLU 2250.0066
ILE 2260.0052
ARG 2270.0051
LEU 2280.0039
HIS 2290.0040
LYS 2300.0028
LEU 2310.0023
THR 2320.0021
LEU 2330.0028
ARG 2340.0035
ASN 2350.0051
ASN 2360.0051
PHE 2370.0066
ASP 2380.0081
SER 2390.0088
LEU 2400.0085
ASN 2410.0093
VAL 2420.0079
MET 2430.0068
LYS 2440.0076
THR 2450.0079
CYS 2460.0063
ILE 2470.0059
GLN 2480.0073
GLY 2490.0066
LEU 2500.0055
ALA 2510.0069
GLY 2520.0073
LEU 2530.0056
GLU 2540.0058
VAL 2550.0043
HIS 2560.0047
ARG 2570.0034
LEU 2580.0025
VAL 2590.0015
LEU 2600.0026
GLY 2610.0037
GLU 2620.0052
PHE 2630.0064
ARG 2640.0080
ASN 2650.0092
GLU 2660.0084
GLY 2670.0090
ASN 2680.0083
LEU 2690.0083
GLU 2700.0098
LYS 2710.0093
PHE 2720.0077
ASP 2730.0084
LYS 2740.0080
SER 2750.0085
ALA 2760.0072
LEU 2770.0060
GLU 2780.0075
GLY 2790.0072
LEU 2800.0058
CYS 2810.0073
ASN 2820.0078
LEU 2830.0063
THR 2840.0064
ILE 2850.0049
GLU 2860.0053
GLU 2870.0039
PHE 2880.0024
ARG 2890.0013
LEU 2900.0020
ALA 2910.0031
TYR 2920.0047
LEU 2930.0055
ASP 2940.0073
TYR 2950.0076
TYR 2960.0074
LEU 2970.0062
ASP 2980.0070
GLY 2990.0060
ILE 3000.0051
ILE 3010.0063
ASP 3020.0068
LEU 3030.0057
PHE 3040.0045
ASN 3050.0060
CYS 3060.0058
LEU 3070.0042
THR 3080.0052
ASN 3090.0058
VAL 3100.0044
SER 3110.0049
SER 3120.0037
PHE 3130.0022
SER 3140.0016
LEU 3150.0017
VAL 3160.0032
SER 3170.0044
VAL 3180.0041
THR 3190.0050
ILE 3200.0046
GLU 3210.0055
ARG 3220.0050
VAL 3230.0035
LYS 3240.0041
ASP 3250.0042
PHE 3260.0028
SER 3270.0036
TYR 3280.0043
ASN 3290.0045
PHE 3300.0038
GLY 3310.0045
TRP 3320.0041
GLN 3330.0049
HIS 3340.0039
LEU 3350.0024
GLU 3360.0024
LEU 3370.0019
VAL 3380.0033
ASN 3390.0043
CYS 3400.0036
LYS 3410.0044
PHE 3420.0035
GLY 3430.0044
GLN 3440.0034
PHE 3450.0021
PRO 3460.0019
THR 3470.0017
LEU 3480.0010
LYS 3490.0022
LEU 3500.0027
LYS 3510.0040
SER 3520.0049
LEU 3530.0039
LYS 3540.0045
ARG 3550.0041
LEU 3560.0030
THR 3570.0027
PHE 3580.0022
THR 3590.0033
SER 3600.0039
ASN 3610.0033
LYS 3620.0042
GLY 3630.0041
GLY 3640.0036
ASN 3650.0025
ALA 3660.0022
PHE 3670.0017
SER 3680.0012
GLU 3690.0008
VAL 3700.0006
ASP 3710.0013
LEU 3720.0044
PRO 3730.0045
SER 3740.0044
LEU 3750.0033
GLU 3760.0024
PHE 3770.0029
LEU 3780.0022
ASP 3790.0023
LEU 3800.0020
SER 3810.0026
ARG 3820.0028
ASN 3830.0025
GLY 3840.0025
LEU 3850.0020
SER 3860.0019
PHE 3870.0012
LYS 3880.0014
GLY 3890.0012
CYS 3900.0009
CYS 3910.0006
SER 3920.0013
GLN 3930.0013
SER 3940.0012
ASP 3950.0007
PHE 3960.0007
GLY 3970.0020
THR 3980.0022
ILE 3990.0051
SER 4000.0038
LEU 4010.0020
LYS 4020.0009
TYR 4030.0011
LEU 4040.0011
ASP 4050.0014
LEU 4060.0014
SER 4070.0014
PHE 4080.0017
ASN 4090.0016
GLY 4100.0017
VAL 4110.0015
ILE 4120.0011
THR 4130.0011
MET 4140.0009
SER 4150.0011
SER 4160.0009
ASN 4170.0010
PHE 4180.0009
LEU 4190.0009
GLY 4200.0008
LEU 4210.0008
GLU 4220.0007
GLN 4230.0006
LEU 4240.0003
GLU 4250.0004
HIS 4260.0009
LEU 4270.0011
ASP 4280.0011
PHE 4290.0011
GLN 4300.0012
HIS 4310.0013
SER 4320.0013
ASN 4330.0013
LEU 4340.0010
LYS 4350.0011
GLN 4360.0010
MET 4370.0008
SER 4380.0008
GLU 4390.0008
PHE 4400.0009
SER 4410.0010
VAL 4420.0006
PHE 4430.0006
LEU 4440.0007
SER 4450.0007
LEU 4460.0007
ARG 4470.0007
ASN 4480.0009
LEU 4490.0009
ILE 4500.0012
TYR 4510.0012
LEU 4520.0012
ASP 4530.0012
ILE 4540.0012
SER 4550.0013
HIS 4560.0013
THR 4570.0011
HIS 4580.0011
THR 4590.0013
ARG 4600.0013
VAL 4610.0014
ALA 4620.0010
PHE 4630.0012
ASN 4640.0013
GLY 4650.0013
ILE 4660.0012
PHE 4670.0012
ASN 4680.0012
GLY 4690.0012
LEU 4700.0013
SER 4710.0014
SER 4720.0016
LEU 4730.0016
GLU 4740.0018
VAL 4750.0018
LEU 4760.0016
LYS 4770.0015
MET 4780.0016
ALA 4790.0015
GLY 4800.0015
ASN 4810.0016
SER 4820.0016
PHE 4830.0018
GLN 4840.0019
GLU 4850.0020
ASN 4860.0020
PHE 4870.0022
LEU 4880.0022
PRO 4890.0023
ASP 4900.0024
ILE 4910.0023
PHE 4920.0021
THR 4930.0022
GLU 4940.0022
LEU 4950.0021
ARG 4960.0023
ASN 4970.0022
LEU 4980.0022
THR 4990.0023
PHE 5000.0022
LEU 5010.0020
ASP 5020.0019
LEU 5030.0019
SER 5040.0018
GLN 5050.0018
CYS 5060.0020
GLN 5070.0021
LEU 5080.0023
GLU 5090.0025
GLN 5100.0027
LEU 5110.0028
SER 5120.0029
PRO 5130.0030
THR 5140.0031
ALA 5150.0028
PHE 5160.0028
ASN 5170.0029
SER 5180.0030
LEU 5190.0028
SER 5200.0030
SER 5210.0028
LEU 5220.0027
GLN 5230.0026
VAL 5240.0024
LEU 5250.0023
ASN 5260.0021
MET 5270.0022
SER 5280.0020
HIS 5290.0021
ASN 5300.0023
ASN 5310.0025
PHE 5320.0029
PHE 5330.0030
SER 5340.0030
LEU 5350.0028
ASP 5360.0031
THR 5370.0030
PHE 5380.0034
PRO 5390.0033
TYR 5400.0031
LYS 5410.0035
CYS 5420.0034
LEU 5430.0032
ASN 5440.0034
SER 5450.0032
LEU 5460.0029
GLN 5470.0027
VAL 5480.0025
LEU 5490.0024
ASP 5500.0022
TYR 5510.0022
SER 5520.0021
LEU 5530.0023
ASN 5540.0026
HIS 5550.0029
ILE 5560.0029
MET 5570.0033
THR 5580.0033
SER 5590.0032
LYS 5600.0036
LYS 5610.0036
GLN 5620.0034
GLU 5630.0035
LEU 5640.0030
GLN 5650.0030
HIS 5660.0033
PHE 5670.0030
PRO 5680.0032
SER 5690.0033
SER 5700.0032
LEU 5710.0028
ALA 5720.0025
PHE 5730.0022
LEU 5740.0022
ASN 5750.0021
LEU 5760.0022
THR 5770.0021
GLN 5780.0025
ASN 5790.0028
ASP 5800.0033
PHE 5810.0032
ALA 5820.0039
CYS 5830.0038
THR 5840.0044
CYS 5850.0042
GLU 5860.0045
HIS 5870.0037
GLN 5880.0032
SER 5890.0029
PHE 5900.0028
LEU 5910.0027
GLN 5920.0024
TRP 5930.0023
ILE 5940.0022
LYS 5950.0021
ASP 5960.0020
GLN 5970.0020
ARG 5980.0020
GLN 5990.0021
LEU 6000.0021
LEU 6010.0020
VAL 6020.0017
GLU 6030.0018
VAL 6040.0021
GLU 6050.0024
ARG 6060.0024
MET 6070.0025
GLU 6080.0031
CYS 6090.0036
ALA 6100.0042
THR 6110.0047
PRO 6120.0053
SER 6130.0058
ASP 6140.0057
LYS 6150.0048
GLN 6160.0047
GLY 6170.0042
MET 6180.0039
PRO 6190.0032
VAL 6200.0029
LEU 6210.0026
SER 6220.0032
LEU 6230.0035
ASN 6240.0038
ILE 6250.0034
THR 6260.0039
CYS 6270.0044
GLU 10.0942
ALA 20.1002
ALA 30.0737
ALA 40.0256
LYS 50.0483
MET 60.0221
GLN 70.0326
ARG 80.0524
LEU 90.0469
VAL 100.0510
LEU 110.0821
LEU 120.0828
LEU 130.0700
ALA 140.0854
ILE 150.1042
SER 160.0770
LEU 170.0683
LEU 180.0719
LEU 190.0627
TYR 200.0473
GLN 210.0415
ASP 220.0331
LEU 230.0179
PRO 240.0116
VAL 250.0132
ARG 260.0106
SER 270.0091
GLU 280.0108
PHE 290.0113
GLU 300.0087
LEU 310.0077
ASP 320.0093
ARG 330.0090
ILE 340.0079
CYS 350.0089
GLY 360.0075
TYR 370.0064
GLY 380.0062
THR 390.0069
ALA 400.0079
ARG 410.0079
CYS 420.0100
ARG 430.0098
LYS 440.0114
LYS 450.0098
CYS 460.0066
ARG 470.0048
SER 480.0036
GLN 490.0032
GLU 500.0049
TYR 510.0067
ARG 520.0093
ILE 530.0106
GLY 540.0128
ARG 550.0142
CYS 560.0131
PRO 570.0147
ASN 580.0153
THR 590.0163
TYR 600.0142
ALA 610.0113
CYS 620.0100
CYS 630.0080
LEU 640.0066
ARG 650.0046
LYS 660.0025
TRP 670.0021
ASP 680.0015
GLU 690.0011
SER 700.0015
LEU 710.0026
LEU 720.0026
ASN 730.0027
ARG 740.0031
THR 750.0033
LYS 760.0041
PRO 770.0036
GLU 780.0037
ALA 790.0033
ALA 800.0029
ALA 810.0015
LYS 820.0014
LYS 830.0015
GLU 840.0015
MET 850.0016
ASN 860.0017
LEU 870.0013
SER 880.0014
VAL 890.0011
GLY 900.0012
LEU 910.0014
GLY 920.0014
GLY 930.0022
GLY 940.0027
SER 950.0025
ASN 960.0021
LEU 970.0018
SER 980.0018
VAL 990.0013
GLY 1000.0015
LEU 1010.0010
GLY 1020.0007
GLU 1030.0007
ILE 1040.0010
GLY 1050.0018
GLY 1060.0031
GLY 1070.0027
SER 1080.0027
LYS 1090.0017
LEU 1100.0016
LEU 1110.0015
ASP 1120.0021
ILE 1130.0021
ASN 1140.0029
LEU 1150.0027
GLY 1160.0032
ARG 1170.0033
GLY 1180.0024
GLY 1190.0023
GLY 1200.0019
SER 1210.0014
MET 1220.0011
VAL 1230.0011
ASP 1240.0008
LEU 1250.0010
THR 1260.0011
PHE 1270.0015
GLY 1280.0017
GLY 1290.0019
VAL 1300.0024
GLY 1310.0037
GLY 1320.0039
GLY 1330.0036
SER 1340.0032
THR 1350.0025
PHE 1360.0019
THR 1370.0014
PHE 1380.0012
PHE 1390.0012
PRO 1400.0014
LEU 1410.0021
VAL 1420.0026
ILE 1430.0034
GLY 1440.0041
GLY 1450.0049
GLY 1460.0054
SER 1470.0050
ASP 1480.0043
ALA 1490.0040
MET 1500.0031
TYR 1510.0028
LEU 1520.0024
GLY 1530.0023
PHE 1540.0022
ALA 1550.0022
ALA 1560.0031
GLY 1570.0030
GLY 1580.0036
GLY 1590.0034
SER 1600.0036
ALA 1610.0030
GLY 1620.0027
GLY 1630.0020
GLU 1640.0014
ASN 1650.0010
HIS 1660.0005
VAL 1670.0007
ALA 1680.0008
PHE 1690.0013
GLY 1700.0016
PRO 1710.0029
GLY 1720.0028
PRO 1730.0027
GLY 1740.0019
VAL 1750.0013
ASP 1760.0007
LEU 1770.0003
THR 1780.0004
PHE 1790.0009
GLY 1800.0014
GLY 1810.0012
VAL 1820.0012
GLN 1830.0007
PHE 1840.0004
ALA 1850.0004
MET 1860.0006
VAL 1870.0007
ASN 1880.0011
ASN 1890.0021
GLY 1900.0025
PRO 1910.0044
GLY 1920.0077
PRO 1930.0078
GLY 1940.0044
GLU 1950.0007
SER 1960.0071
PHE 1970.0066
THR 1980.0030
ALA 1990.0033
GLN 2000.0012
PRO 2010.0034
ALA 2020.0040
ASP 2030.0028
MET 2040.0013
GLN 2050.0025
ALA 2060.0028
GLY 2070.0018
ILE 2080.0017
LYS 2090.0013
GLY 2100.0016
PRO 2110.0019
GLY 2120.0018
PRO 2130.0034
GLY 2140.0019
GLY 2150.0009
SER 2160.0019
ILE 2170.0019
GLN 2180.0021
VAL 2190.0021
ILE 2200.0024
ASN 2210.0025
GLY 2220.0021
SER 2230.0021
THR 2240.0028
ILE 2250.0028
GLY 2260.0030
THR 2270.0025
GLY 2280.0014
SER 2290.0018
LYS 2300.0018
LYS 2310.0023
THR 2320.0022
ILE 2330.0025
LEU 2340.0023
ILE 2350.0027
TYR 2360.0022
SER 2370.0017
ILE 2380.0015
ILE 2390.0012
GLY 2400.0013
VAL 2410.0016
LYS 2420.0016
LYS 2430.0019
GLY 2440.0020
THR 2450.0018
LEU 2460.0020
ALA 2470.0020
TRP 2480.0020
ALA 2490.0019
ARG 2500.0020
THR 2510.0025
GLY 2520.0023
PHE 2530.0027
SER 2540.0027
PRO 2550.0029
ALA 2560.0038
LYS 2570.0041
LYS 2580.0048
LEU 2590.0045
ASN 2600.0054
ALA 2610.0072
GLY 2620.0052
VAL 2630.0046
VAL 2640.0032
ARG 2650.0036
VAL 2660.0038
PHE 2670.0032
PHE 2680.0029
LEU 2690.0025
ASN 2700.0023
GLN 2710.0017
LYS 2720.0015
LYS 2730.0015
ALA 2740.0016
LYS 2750.0014
ASP 2760.0017
VAL 2770.0015
LEU 2780.0015
ARG 2790.0017
LYS 2800.0016
THR 2810.0018
SER 2820.0028
ARG 2830.0020
PRO 2840.0039
MET 2850.0052
VAL 2860.0039
ASP 2870.0030
LEU 2880.0036
THR 2890.0023
PHE 2900.0020
GLY 2910.0026
GLY 2920.0019

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.