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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 41  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0994
GLU 270.0103
PRO 280.0108
CYS 290.0094
VAL 300.0109
GLU 310.0112
VAL 320.0120
VAL 330.0118
PRO 340.0111
ASN 350.0086
ILE 360.0086
THR 370.0086
TYR 380.0078
GLN 390.0080
CYS 400.0067
MET 410.0067
GLU 420.0069
LEU 430.0075
ASN 440.0068
PHE 450.0058
TYR 460.0056
LYS 470.0047
ILE 480.0032
PRO 490.0050
ASP 500.0052
ASN 510.0070
LEU 520.0059
PRO 530.0053
PHE 540.0034
SER 550.0050
THR 560.0054
LYS 570.0061
ASN 580.0063
LEU 590.0049
ASP 600.0051
LEU 610.0037
SER 620.0041
PHE 630.0040
ASN 640.0038
PRO 650.0035
LEU 660.0028
ARG 670.0025
HIS 680.0028
LEU 690.0023
GLY 700.0031
SER 710.0034
TYR 720.0031
SER 730.0023
PHE 740.0017
PHE 750.0020
SER 760.0017
PHE 770.0020
PRO 780.0028
GLU 790.0041
LEU 800.0040
GLN 810.0055
VAL 820.0052
LEU 830.0038
ASP 840.0037
LEU 850.0025
SER 860.0028
ARG 870.0023
CYS 880.0019
GLU 890.0016
ILE 900.0016
GLN 910.0023
THR 920.0028
ILE 930.0028
GLU 940.0036
ASP 950.0044
GLY 960.0040
ALA 970.0032
TYR 980.0032
GLN 990.0041
SER 1000.0035
LEU 1010.0037
SER 1020.0052
HIS 1030.0053
LEU 1040.0047
SER 1050.0054
THR 1060.0048
LEU 1070.0040
ILE 1080.0036
LEU 1090.0030
THR 1100.0030
GLY 1110.0024
ASN 1120.0019
PRO 1130.0018
ILE 1140.0023
GLN 1150.0027
SER 1160.0033
LEU 1170.0033
ALA 1180.0040
LEU 1190.0046
GLY 1200.0047
ALA 1210.0039
PHE 1220.0043
SER 1230.0050
GLY 1240.0050
LEU 1250.0049
SER 1260.0059
SER 1270.0055
LEU 1280.0050
GLN 1290.0049
LYS 1300.0044
LEU 1310.0041
VAL 1320.0037
ALA 1330.0034
VAL 1340.0033
GLU 1350.0029
THR 1360.0028
ASN 1370.0032
LEU 1380.0033
ALA 1390.0032
SER 1400.0034
LEU 1410.0036
GLU 1420.0037
ASN 1430.0038
PHE 1440.0039
PRO 1450.0042
ILE 1460.0043
GLY 1470.0046
HIS 1480.0050
LEU 1490.0048
LYS 1500.0053
THR 1510.0053
LEU 1520.0044
LYS 1530.0043
GLU 1540.0041
LEU 1550.0039
ASN 1560.0037
VAL 1570.0036
ALA 1580.0036
HIS 1590.0035
ASN 1600.0035
LEU 1610.0035
ILE 1620.0037
GLN 1630.0035
SER 1640.0033
PHE 1650.0030
LYS 1660.0031
LEU 1670.0030
PRO 1680.0033
GLU 1690.0035
TYR 1700.0039
PHE 1710.0037
SER 1720.0040
ASN 1730.0044
LEU 1740.0043
THR 1750.0046
ASN 1760.0047
LEU 1770.0038
GLU 1780.0037
HIS 1790.0037
LEU 1800.0036
ASP 1810.0037
LEU 1820.0036
SER 1830.0036
SER 1840.0036
ASN 1850.0036
LYS 1860.0035
ILE 1870.0032
GLN 1880.0030
SER 1890.0028
ILE 1900.0027
TYR 1910.0029
CYS 1920.0028
THR 1930.0029
ASP 1940.0027
LEU 1950.0025
ARG 1960.0025
VAL 1970.0026
LEU 1980.0026
HIS 1990.0024
GLN 2000.0026
MET 2010.0030
PRO 2020.0029
LEU 2030.0033
LEU 2040.0031
ASN 2050.0033
LEU 2060.0030
SER 2070.0031
LEU 2080.0030
ASP 2090.0033
LEU 2100.0030
SER 2110.0032
LEU 2120.0033
ASN 2130.0031
PRO 2140.0028
MET 2150.0025
ASN 2160.0024
PHE 2170.0026
ILE 2180.0025
GLN 2190.0029
PRO 2200.0032
GLY 2210.0032
ALA 2220.0027
PHE 2230.0026
LYS 2240.0030
GLU 2250.0030
ILE 2260.0026
ARG 2270.0027
LEU 2280.0027
HIS 2290.0029
LYS 2300.0030
LEU 2310.0028
THR 2320.0031
LEU 2330.0029
ARG 2340.0036
ASN 2350.0036
ASN 2360.0028
PHE 2370.0032
ASP 2380.0034
SER 2390.0032
LEU 2400.0032
ASN 2410.0028
VAL 2420.0026
MET 2430.0028
LYS 2440.0028
THR 2450.0025
CYS 2460.0024
ILE 2470.0029
GLN 2480.0030
GLY 2490.0027
LEU 2500.0028
ALA 2510.0031
GLY 2520.0032
LEU 2530.0030
GLU 2540.0031
VAL 2550.0031
HIS 2560.0033
ARG 2570.0035
LEU 2580.0035
VAL 2590.0038
LEU 2600.0038
GLY 2610.0042
GLU 2620.0045
PHE 2630.0054
ARG 2640.0062
ASN 2650.0063
GLU 2660.0053
GLY 2670.0053
ASN 2680.0050
LEU 2690.0046
GLU 2700.0049
LYS 2710.0048
PHE 2720.0048
ASP 2730.0048
LYS 2740.0047
SER 2750.0043
ALA 2760.0042
LEU 2770.0041
GLU 2780.0040
GLY 2790.0037
LEU 2800.0038
CYS 2810.0040
ASN 2820.0037
LEU 2830.0035
THR 2840.0037
ILE 2850.0037
GLU 2860.0039
GLU 2870.0040
PHE 2880.0042
ARG 2890.0045
LEU 2900.0047
ALA 2910.0049
TYR 2920.0053
LEU 2930.0054
ASP 2940.0060
TYR 2950.0059
TYR 2960.0062
LEU 2970.0059
ASP 2980.0061
GLY 2990.0057
ILE 3000.0053
ILE 3010.0053
ASP 3020.0050
LEU 3030.0050
PHE 3040.0048
ASN 3050.0047
CYS 3060.0045
LEU 3070.0045
THR 3080.0045
ASN 3090.0044
VAL 3100.0044
SER 3110.0044
SER 3120.0044
PHE 3130.0046
SER 3140.0048
LEU 3150.0050
VAL 3160.0052
SER 3170.0055
VAL 3180.0055
THR 3190.0057
ILE 3200.0056
GLU 3210.0058
ARG 3220.0053
VAL 3230.0048
LYS 3240.0047
ASP 3250.0048
PHE 3260.0043
SER 3270.0042
TYR 3280.0043
ASN 3290.0042
PHE 3300.0043
GLY 3310.0043
TRP 3320.0044
GLN 3330.0044
HIS 3340.0044
LEU 3350.0044
GLU 3360.0045
LEU 3370.0046
VAL 3380.0048
ASN 3390.0051
CYS 3400.0051
LYS 3410.0051
PHE 3420.0048
GLY 3430.0049
GLN 3440.0042
PHE 3450.0038
PRO 3460.0038
THR 3470.0038
LEU 3480.0038
LYS 3490.0036
LEU 3500.0037
LYS 3510.0036
SER 3520.0037
LEU 3530.0038
LYS 3540.0039
ARG 3550.0040
LEU 3560.0039
THR 3570.0040
PHE 3580.0039
THR 3590.0043
SER 3600.0044
ASN 3610.0041
LYS 3620.0043
GLY 3630.0041
GLY 3640.0036
ASN 3650.0031
ALA 3660.0028
PHE 3670.0029
SER 3680.0028
GLU 3690.0027
VAL 3700.0029
ASP 3710.0028
LEU 3720.0032
PRO 3730.0031
SER 3740.0033
LEU 3750.0034
GLU 3760.0036
PHE 3770.0036
LEU 3780.0033
ASP 3790.0037
LEU 3800.0033
SER 3810.0039
ARG 3820.0040
ASN 3830.0035
GLY 3840.0034
LEU 3850.0028
SER 3860.0024
PHE 3870.0033
LYS 3880.0032
GLY 3890.0032
CYS 3900.0035
CYS 3910.0036
SER 3920.0032
GLN 3930.0030
SER 3940.0028
ASP 3950.0029
PHE 3960.0030
GLY 3970.0030
THR 3980.0031
ILE 3990.0033
SER 4000.0034
LEU 4010.0034
LYS 4020.0035
TYR 4030.0037
LEU 4040.0036
ASP 4050.0039
LEU 4060.0037
SER 4070.0043
PHE 4080.0045
ASN 4090.0041
GLY 4100.0040
VAL 4110.0039
ILE 4120.0041
THR 4130.0040
MET 4140.0040
SER 4150.0038
SER 4160.0037
ASN 4170.0037
PHE 4180.0036
LEU 4190.0034
GLY 4200.0033
LEU 4210.0035
GLU 4220.0036
GLN 4230.0036
LEU 4240.0037
GLU 4250.0038
HIS 4260.0039
LEU 4270.0042
ASP 4280.0045
PHE 4290.0045
GLN 4300.0049
HIS 4310.0050
SER 4320.0047
ASN 4330.0047
LEU 4340.0046
LYS 4350.0045
GLN 4360.0044
MET 4370.0044
SER 4380.0044
GLU 4390.0043
PHE 4400.0040
SER 4410.0037
VAL 4420.0041
PHE 4430.0039
LEU 4440.0037
SER 4450.0036
LEU 4460.0037
ARG 4470.0034
ASN 4480.0035
LEU 4490.0037
ILE 4500.0037
TYR 4510.0040
LEU 4520.0044
ASP 4530.0047
ILE 4540.0048
SER 4550.0050
HIS 4560.0054
THR 4570.0053
HIS 4580.0053
THR 4590.0050
ARG 4600.0048
VAL 4610.0045
ALA 4620.0046
PHE 4630.0041
ASN 4640.0035
GLY 4650.0033
ILE 4660.0037
PHE 4670.0036
ASN 4680.0033
GLY 4690.0031
LEU 4700.0032
SER 4710.0026
SER 4720.0028
LEU 4730.0032
GLU 4740.0032
VAL 4750.0038
LEU 4760.0039
LYS 4770.0044
MET 4780.0046
ALA 4790.0049
GLY 4800.0055
ASN 4810.0053
SER 4820.0057
PHE 4830.0052
GLN 4840.0059
GLU 4850.0064
ASN 4860.0055
PHE 4870.0049
LEU 4880.0038
PRO 4890.0039
ASP 4900.0031
ILE 4910.0032
PHE 4920.0022
THR 4930.0019
GLU 4940.0018
LEU 4950.0018
ARG 4960.0012
ASN 4970.0020
LEU 4980.0023
THR 4990.0031
PHE 5000.0035
LEU 5010.0030
ASP 5020.0038
LEU 5030.0038
SER 5040.0044
GLN 5050.0051
CYS 5060.0049
GLN 5070.0055
LEU 5080.0045
GLU 5090.0048
GLN 5100.0044
LEU 5110.0035
SER 5120.0042
PRO 5130.0041
THR 5140.0037
ALA 5150.0026
PHE 5160.0016
ASN 5170.0026
SER 5180.0021
LEU 5190.0015
SER 5200.0029
SER 5210.0033
LEU 5220.0028
GLN 5230.0042
VAL 5240.0038
LEU 5250.0025
ASN 5260.0032
MET 5270.0027
SER 5280.0039
HIS 5290.0050
ASN 5300.0045
ASN 5310.0050
PHE 5320.0043
PHE 5330.0046
SER 5340.0037
LEU 5350.0025
ASP 5360.0037
THR 5370.0039
PHE 5380.0051
PRO 5390.0037
TYR 5400.0034
LYS 5410.0054
CYS 5420.0048
LEU 5430.0039
ASN 5440.0055
SER 5450.0054
LEU 5460.0044
GLN 5470.0058
VAL 5480.0048
LEU 5490.0030
ASP 5500.0032
TYR 5510.0024
SER 5520.0039
LEU 5530.0050
ASN 5540.0043
HIS 5550.0045
ILE 5560.0030
MET 5570.0037
THR 5580.0038
SER 5590.0043
LYS 5600.0064
LYS 5610.0069
GLN 5620.0073
GLU 5630.0073
LEU 5640.0058
GLN 5650.0075
HIS 5660.0069
PHE 5670.0055
PRO 5680.0064
SER 5690.0081
SER 5700.0076
LEU 5710.0062
ALA 5720.0072
PHE 5730.0060
LEU 5740.0041
ASN 5750.0040
LEU 5760.0028
THR 5770.0043
GLN 5780.0051
ASN 5790.0038
ASP 5800.0046
PHE 5810.0031
ALA 5820.0039
CYS 5830.0025
THR 5840.0039
CYS 5850.0044
GLU 5860.0063
HIS 5870.0047
GLN 5880.0043
SER 5890.0057
PHE 5900.0039
LEU 5910.0028
GLN 5920.0048
TRP 5930.0052
ILE 5940.0040
LYS 5950.0055
ASP 5960.0072
GLN 5970.0063
ARG 5980.0066
GLN 5990.0081
LEU 6000.0065
LEU 6010.0056
VAL 6020.0058
GLU 6030.0062
VAL 6040.0056
GLU 6050.0063
ARG 6060.0059
MET 6070.0044
GLU 6080.0050
CYS 6090.0043
ALA 6100.0057
THR 6110.0061
PRO 6120.0059
SER 6130.0077
ASP 6140.0071
LYS 6150.0054
GLN 6160.0065
GLY 6170.0071
MET 6180.0058
PRO 6190.0052
VAL 6200.0032
LEU 6210.0045
SER 6220.0055
LEU 6230.0031
ASN 6240.0028
ILE 6250.0036
THR 6260.0042
CYS 6270.0053
GLU 10.0054
ALA 20.0051
ALA 30.0046
ALA 40.0033
LYS 50.0010
MET 60.0011
GLN 70.0014
ARG 80.0023
LEU 90.0027
VAL 100.0024
LEU 110.0036
LEU 120.0046
LEU 130.0043
ALA 140.0042
ILE 150.0056
SER 160.0053
LEU 170.0043
LEU 180.0041
LEU 190.0046
TYR 200.0043
GLN 210.0033
ASP 220.0033
LEU 230.0036
PRO 240.0036
VAL 250.0039
ARG 260.0058
SER 270.0052
GLU 280.0057
PHE 290.0055
GLU 300.0047
LEU 310.0048
ASP 320.0046
ARG 330.0040
ILE 340.0041
CYS 350.0042
GLY 360.0034
TYR 370.0030
GLY 380.0034
THR 390.0038
ALA 400.0041
ARG 410.0033
CYS 420.0035
ARG 430.0027
LYS 440.0026
LYS 450.0025
CYS 460.0034
ARG 470.0033
SER 480.0039
GLN 490.0039
GLU 500.0038
TYR 510.0042
ARG 520.0044
ILE 530.0051
GLY 540.0055
ARG 550.0054
CYS 560.0050
PRO 570.0059
ASN 580.0052
THR 590.0049
TYR 600.0039
ALA 610.0039
CYS 620.0039
CYS 630.0032
LEU 640.0034
ARG 650.0033
LYS 660.0037
TRP 670.0037
ASP 680.0036
GLU 690.0036
SER 700.0037
LEU 710.0037
LEU 720.0035
ASN 730.0031
ARG 740.0035
THR 750.0039
LYS 760.0030
PRO 770.0020
GLU 780.0018
ALA 790.0007
ALA 800.0010
ALA 810.0126
LYS 820.0120
LYS 830.0123
GLU 840.0117
MET 850.0121
ASN 860.0102
LEU 870.0069
SER 880.0082
VAL 890.0069
GLY 900.0096
LEU 910.0120
GLY 920.0142
GLY 930.0192
GLY 940.0193
SER 950.0177
ASN 960.0140
LEU 970.0105
SER 980.0098
VAL 990.0064
GLY 1000.0089
LEU 1010.0077
GLY 1020.0079
GLU 1030.0108
ILE 1040.0108
GLY 1050.0142
GLY 1060.0206
GLY 1070.0167
SER 1080.0136
LYS 1090.0098
LEU 1100.0070
LEU 1110.0038
ASP 1120.0048
ILE 1130.0084
ASN 1140.0141
LEU 1150.0170
GLY 1160.0266
ARG 1170.0333
GLY 1180.0296
GLY 1190.0248
GLY 1200.0153
SER 1210.0093
MET 1220.0073
VAL 1230.0062
ASP 1240.0041
LEU 1250.0030
THR 1260.0043
PHE 1270.0041
GLY 1280.0078
GLY 1290.0080
VAL 1300.0116
GLY 1310.0142
GLY 1320.0167
GLY 1330.0151
SER 1340.0154
THR 1350.0144
PHE 1360.0109
THR 1370.0123
PHE 1380.0106
PHE 1390.0135
PRO 1400.0140
LEU 1410.0164
VAL 1420.0209
ILE 1430.0210
GLY 1440.0261
GLY 1450.0286
GLY 1460.0259
SER 1470.0204
ASP 1480.0192
ALA 1490.0133
MET 1500.0117
TYR 1510.0065
LEU 1520.0050
GLY 1530.0081
PHE 1540.0097
ALA 1550.0144
ALA 1560.0179
GLY 1570.0215
GLY 1580.0247
GLY 1590.0221
SER 1600.0182
ALA 1610.0098
GLY 1620.0045
GLY 1630.0033
GLU 1640.0035
ASN 1650.0052
HIS 1660.0056
VAL 1670.0053
ALA 1680.0061
PHE 1690.0056
GLY 1700.0069
PRO 1710.0186
GLY 1720.0139
PRO 1730.0083
GLY 1740.0028
VAL 1750.0064
ASP 1760.0132
LEU 1770.0119
THR 1780.0128
PHE 1790.0122
GLY 1800.0138
GLY 1810.0226
VAL 1820.0254
GLN 1830.0251
PHE 1840.0257
ALA 1850.0284
MET 1860.0274
VAL 1870.0302
ASN 1880.0353
ASN 1890.0611
GLY 1900.0733
PRO 1910.0994
GLY 1920.0564
PRO 1930.0617
GLY 1940.0633
GLU 1950.0247
SER 1960.0495
PHE 1970.0488
THR 1980.0481
ALA 1990.0474
GLN 2000.0471
PRO 2010.0257
ALA 2020.0088
ASP 2030.0227
MET 2040.0492
GLN 2050.0572
ALA 2060.0734
GLY 2070.0412
ILE 2080.0371
LYS 2090.0240
GLY 2100.0557
PRO 2110.0618
GLY 2120.0334
PRO 2130.0720
GLY 2140.0450
GLY 2150.0309
SER 2160.0542
ILE 2170.0439
GLN 2180.0539
VAL 2190.0393
ILE 2200.0511
ASN 2210.0356
GLY 2220.0344
SER 2230.0240
THR 2240.0157
ILE 2250.0232
GLY 2260.0281
THR 2270.0264
GLY 2280.0225
SER 2290.0168
LYS 2300.0138
LYS 2310.0123
THR 2320.0120
ILE 2330.0124
LEU 2340.0146
ILE 2350.0143
TYR 2360.0112
SER 2370.0112
ILE 2380.0093
ILE 2390.0081
GLY 2400.0084
VAL 2410.0054
LYS 2420.0051
LYS 2430.0060
GLY 2440.0053
THR 2450.0041
LEU 2460.0030
ALA 2470.0032
TRP 2480.0051
ALA 2490.0080
ARG 2500.0111
THR 2510.0159
GLY 2520.0167
PHE 2530.0151
SER 2540.0163
PRO 2550.0143
ALA 2560.0139
LYS 2570.0120
LYS 2580.0123
LEU 2590.0113
ASN 2600.0117
ALA 2610.0138
GLY 2620.0137
VAL 2630.0136
VAL 2640.0140
ARG 2650.0138
VAL 2660.0113
PHE 2670.0086
PHE 2680.0075
LEU 2690.0061
ASN 2700.0056
GLN 2710.0036
LYS 2720.0036
LYS 2730.0035
ALA 2740.0037
LYS 2750.0041
ASP 2760.0044
VAL 2770.0048
LEU 2780.0052
ARG 2790.0052
LYS 2800.0051
THR 2810.0047
SER 2820.0023
ARG 2830.0036
PRO 2840.0085
MET 2850.0141
VAL 2860.0112
ASP 2870.0088
LEU 2880.0094
THR 2890.0060
PHE 2900.0021
GLY 2910.0089
GLY 2920.0061

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.