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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 42  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1089
GLU 270.0043
PRO 280.0040
CYS 290.0040
VAL 300.0051
GLU 310.0056
VAL 320.0061
VAL 330.0062
PRO 340.0062
ASN 350.0054
ILE 360.0048
THR 370.0045
TYR 380.0040
GLN 390.0039
CYS 400.0030
MET 410.0033
GLU 420.0033
LEU 430.0026
ASN 440.0019
PHE 450.0011
TYR 460.0006
LYS 470.0004
ILE 480.0006
PRO 490.0019
ASP 500.0028
ASN 510.0037
LEU 520.0037
PRO 530.0042
PHE 540.0037
SER 550.0039
THR 560.0034
LYS 570.0029
ASN 580.0030
LEU 590.0024
ASP 600.0027
LEU 610.0020
SER 620.0026
PHE 630.0029
ASN 640.0021
PRO 650.0020
LEU 660.0014
ARG 670.0020
HIS 680.0019
LEU 690.0014
GLY 700.0017
SER 710.0018
TYR 720.0017
SER 730.0010
PHE 740.0008
PHE 750.0017
SER 760.0020
PHE 770.0019
PRO 780.0020
GLU 790.0021
LEU 800.0016
GLN 810.0017
VAL 820.0019
LEU 830.0016
ASP 840.0020
LEU 850.0018
SER 860.0025
ARG 870.0027
CYS 880.0021
GLU 890.0025
ILE 900.0022
GLN 910.0027
THR 920.0025
ILE 930.0020
GLU 940.0022
ASP 950.0022
GLY 960.0017
ALA 970.0013
TYR 980.0008
GLN 990.0013
SER 1000.0011
LEU 1010.0005
SER 1020.0005
HIS 1030.0004
LEU 1040.0007
SER 1050.0012
THR 1060.0018
LEU 1070.0016
ILE 1080.0020
LEU 1090.0021
THR 1100.0025
GLY 1110.0027
ASN 1120.0027
PRO 1130.0031
ILE 1140.0028
GLN 1150.0032
SER 1160.0030
LEU 1170.0026
ALA 1180.0026
LEU 1190.0025
GLY 1200.0021
ALA 1210.0019
PHE 1220.0017
SER 1230.0016
GLY 1240.0011
LEU 1250.0010
SER 1260.0009
SER 1270.0012
LEU 1280.0015
GLN 1290.0018
LYS 1300.0019
LEU 1310.0020
VAL 1320.0020
ALA 1330.0022
VAL 1340.0024
GLU 1350.0027
THR 1360.0026
ASN 1370.0028
LEU 1380.0026
ALA 1390.0025
SER 1400.0022
LEU 1410.0021
GLU 1420.0022
ASN 1430.0023
PHE 1440.0023
PRO 1450.0022
ILE 1460.0021
GLY 1470.0020
HIS 1480.0019
LEU 1490.0019
LYS 1500.0019
THR 1510.0019
LEU 1520.0021
LYS 1530.0021
GLU 1540.0021
LEU 1550.0021
ASN 1560.0021
VAL 1570.0023
ALA 1580.0023
HIS 1590.0024
ASN 1600.0024
LEU 1610.0023
ILE 1620.0018
GLN 1630.0015
SER 1640.0013
PHE 1650.0013
LYS 1660.0014
LEU 1670.0017
PRO 1680.0018
GLU 1690.0019
TYR 1700.0021
PHE 1710.0020
SER 1720.0021
ASN 1730.0022
LEU 1740.0021
THR 1750.0022
ASN 1760.0022
LEU 1770.0022
GLU 1780.0021
HIS 1790.0021
LEU 1800.0020
ASP 1810.0020
LEU 1820.0019
SER 1830.0019
SER 1840.0020
ASN 1850.0018
LYS 1860.0015
ILE 1870.0013
GLN 1880.0013
SER 1890.0012
ILE 1900.0011
TYR 1910.0013
CYS 1920.0013
THR 1930.0015
ASP 1940.0013
LEU 1950.0013
ARG 1960.0017
VAL 1970.0018
LEU 1980.0016
HIS 1990.0017
GLN 2000.0021
MET 2010.0021
PRO 2020.0021
LEU 2030.0023
LEU 2040.0021
ASN 2050.0021
LEU 2060.0017
SER 2070.0018
LEU 2080.0015
ASP 2090.0017
LEU 2100.0014
SER 2110.0019
LEU 2120.0024
ASN 2130.0018
PRO 2140.0020
MET 2150.0018
ASN 2160.0021
PHE 2170.0020
ILE 2180.0017
GLN 2190.0018
PRO 2200.0020
GLY 2210.0018
ALA 2220.0014
PHE 2230.0011
LYS 2240.0014
GLU 2250.0014
ILE 2260.0012
ARG 2270.0011
LEU 2280.0010
HIS 2290.0014
LYS 2300.0014
LEU 2310.0012
THR 2320.0019
LEU 2330.0020
ARG 2340.0029
ASN 2350.0035
ASN 2360.0029
PHE 2370.0036
ASP 2380.0044
SER 2390.0046
LEU 2400.0045
ASN 2410.0045
VAL 2420.0037
MET 2430.0033
LYS 2440.0034
THR 2450.0032
CYS 2460.0025
ILE 2470.0024
GLN 2480.0025
GLY 2490.0021
LEU 2500.0016
ALA 2510.0018
GLY 2520.0015
LEU 2530.0009
GLU 2540.0006
VAL 2550.0007
HIS 2560.0011
ARG 2570.0015
LEU 2580.0016
VAL 2590.0024
LEU 2600.0027
GLY 2610.0035
GLU 2620.0042
PHE 2630.0050
ARG 2640.0062
ASN 2650.0065
GLU 2660.0057
GLY 2670.0058
ASN 2680.0055
LEU 2690.0052
GLU 2700.0059
LYS 2710.0055
PHE 2720.0047
ASP 2730.0046
LYS 2740.0041
SER 2750.0040
ALA 2760.0038
LEU 2770.0031
GLU 2780.0031
GLY 2790.0027
LEU 2800.0021
CYS 2810.0021
ASN 2820.0019
LEU 2830.0013
THR 2840.0007
ILE 2850.0009
GLU 2860.0010
GLU 2870.0016
PHE 2880.0020
ARG 2890.0027
LEU 2900.0033
ALA 2910.0039
TYR 2920.0046
LEU 2930.0047
ASP 2940.0056
TYR 2950.0054
TYR 2960.0054
LEU 2970.0045
ASP 2980.0045
GLY 2990.0038
ILE 3000.0033
ILE 3010.0032
ASP 3020.0032
LEU 3030.0033
PHE 3040.0027
ASN 3050.0024
CYS 3060.0022
LEU 3070.0019
THR 3080.0015
ASN 3090.0010
VAL 3100.0014
SER 3110.0014
SER 3120.0020
PHE 3130.0023
SER 3140.0029
LEU 3150.0034
VAL 3160.0040
SER 3170.0045
VAL 3180.0043
THR 3190.0044
ILE 3200.0039
GLU 3210.0040
ARG 3220.0032
VAL 3230.0026
LYS 3240.0021
ASP 3250.0022
PHE 3260.0017
SER 3270.0014
TYR 3280.0015
ASN 3290.0011
PHE 3300.0013
GLY 3310.0011
TRP 3320.0015
GLN 3330.0016
HIS 3340.0021
LEU 3350.0023
GLU 3360.0028
LEU 3370.0030
VAL 3380.0037
ASN 3390.0042
CYS 3400.0039
LYS 3410.0040
PHE 3420.0032
GLY 3430.0031
GLN 3440.0024
PHE 3450.0021
PRO 3460.0018
THR 3470.0014
LEU 3480.0014
LYS 3490.0010
LEU 3500.0011
LYS 3510.0008
SER 3520.0013
LEU 3530.0017
LYS 3540.0020
ARG 3550.0024
LEU 3560.0024
THR 3570.0028
PHE 3580.0028
THR 3590.0033
SER 3600.0036
ASN 3610.0032
LYS 3620.0036
GLY 3630.0030
GLY 3640.0022
ASN 3650.0021
ALA 3660.0016
PHE 3670.0017
SER 3680.0013
GLU 3690.0013
VAL 3700.0013
ASP 3710.0012
LEU 3720.0012
PRO 3730.0011
SER 3740.0016
LEU 3750.0020
GLU 3760.0025
PHE 3770.0028
LEU 3780.0026
ASP 3790.0028
LEU 3800.0025
SER 3810.0028
ARG 3820.0029
ASN 3830.0026
GLY 3840.0025
LEU 3850.0023
SER 3860.0022
PHE 3870.0021
LYS 3880.0020
GLY 3890.0021
CYS 3900.0023
CYS 3910.0025
SER 3920.0021
GLN 3930.0021
SER 3940.0017
ASP 3950.0017
PHE 3960.0019
GLY 3970.0015
THR 3980.0020
ILE 3990.0023
SER 4000.0026
LEU 4010.0028
LYS 4020.0032
TYR 4030.0031
LEU 4040.0027
ASP 4050.0027
LEU 4060.0023
SER 4070.0025
PHE 4080.0024
ASN 4090.0024
GLY 4100.0024
VAL 4110.0024
ILE 4120.0022
THR 4130.0022
MET 4140.0024
SER 4150.0024
SER 4160.0026
ASN 4170.0026
PHE 4180.0027
LEU 4190.0027
GLY 4200.0028
LEU 4210.0029
GLU 4220.0033
GLN 4230.0034
LEU 4240.0032
GLU 4250.0034
HIS 4260.0031
LEU 4270.0029
ASP 4280.0027
PHE 4290.0024
GLN 4300.0024
HIS 4310.0022
SER 4320.0023
ASN 4330.0023
LEU 4340.0023
LYS 4350.0023
GLN 4360.0024
MET 4370.0026
SER 4380.0027
GLU 4390.0027
PHE 4400.0029
SER 4410.0031
VAL 4420.0029
PHE 4430.0031
LEU 4440.0033
SER 4450.0034
LEU 4460.0033
ARG 4470.0037
ASN 4480.0037
LEU 4490.0034
ILE 4500.0034
TYR 4510.0031
LEU 4520.0031
ASP 4530.0028
ILE 4540.0027
SER 4550.0025
HIS 4560.0024
THR 4570.0024
HIS 4580.0023
THR 4590.0024
ARG 4600.0026
VAL 4610.0029
ALA 4620.0028
PHE 4630.0031
ASN 4640.0032
GLY 4650.0034
ILE 4660.0031
PHE 4670.0033
ASN 4680.0036
GLY 4690.0037
LEU 4700.0036
SER 4710.0037
SER 4720.0037
LEU 4730.0035
GLU 4740.0033
VAL 4750.0032
LEU 4760.0031
LYS 4770.0030
MET 4780.0030
ALA 4790.0028
GLY 4800.0028
ASN 4810.0029
SER 4820.0028
PHE 4830.0028
GLN 4840.0029
GLU 4850.0027
ASN 4860.0026
PHE 4870.0027
LEU 4880.0027
PRO 4890.0030
ASP 4900.0030
ILE 4910.0032
PHE 4920.0032
THR 4930.0033
GLU 4940.0036
LEU 4950.0034
ARG 4960.0033
ASN 4970.0033
LEU 4980.0032
THR 4990.0030
PHE 5000.0031
LEU 5010.0030
ASP 5020.0030
LEU 5030.0029
SER 5040.0029
GLN 5050.0029
CYS 5060.0030
GLN 5070.0027
LEU 5080.0026
GLU 5090.0024
GLN 5100.0023
LEU 5110.0022
SER 5120.0024
PRO 5130.0020
THR 5140.0021
ALA 5150.0024
PHE 5160.0022
ASN 5170.0021
SER 5180.0023
LEU 5190.0025
SER 5200.0023
SER 5210.0027
LEU 5220.0029
GLN 5230.0031
VAL 5240.0031
LEU 5250.0028
ASN 5260.0029
MET 5270.0027
SER 5280.0030
HIS 5290.0033
ASN 5300.0030
ASN 5310.0029
PHE 5320.0026
PHE 5330.0025
SER 5340.0018
LEU 5350.0010
ASP 5360.0008
THR 5370.0007
PHE 5380.0007
PRO 5390.0010
TYR 5400.0013
LYS 5410.0014
CYS 5420.0014
LEU 5430.0019
ASN 5440.0023
SER 5450.0029
LEU 5460.0027
GLN 5470.0037
VAL 5480.0034
LEU 5490.0027
ASP 5500.0028
TYR 5510.0023
SER 5520.0030
LEU 5530.0036
ASN 5540.0031
HIS 5550.0031
ILE 5560.0020
MET 5570.0027
THR 5580.0026
SER 5590.0021
LYS 5600.0030
LYS 5610.0025
GLN 5620.0028
GLU 5630.0022
LEU 5640.0017
GLN 5650.0025
HIS 5660.0020
PHE 5670.0020
PRO 5680.0026
SER 5690.0035
SER 5700.0037
LEU 5710.0032
ALA 5720.0046
PHE 5730.0039
LEU 5740.0027
ASN 5750.0028
LEU 5760.0019
THR 5770.0027
GLN 5780.0035
ASN 5790.0029
ASP 5800.0038
PHE 5810.0030
ALA 5820.0044
CYS 5830.0043
THR 5840.0057
CYS 5850.0064
GLU 5860.0066
HIS 5870.0048
GLN 5880.0049
SER 5890.0045
PHE 5900.0030
LEU 5910.0030
GLN 5920.0038
TRP 5930.0032
ILE 5940.0019
LYS 5950.0028
ASP 5960.0039
GLN 5970.0033
ARG 5980.0029
GLN 5990.0042
LEU 6000.0036
LEU 6010.0027
VAL 6020.0040
GLU 6030.0033
VAL 6040.0014
GLU 6050.0022
ARG 6060.0035
MET 6070.0016
GLU 6080.0026
CYS 6090.0034
ALA 6100.0045
THR 6110.0054
PRO 6120.0049
SER 6130.0048
ASP 6140.0045
LYS 6150.0046
GLN 6160.0047
GLY 6170.0040
MET 6180.0031
PRO 6190.0018
VAL 6200.0018
LEU 6210.0014
SER 6220.0017
LEU 6230.0032
ASN 6240.0048
ILE 6250.0056
THR 6260.0072
CYS 6270.0099
GLU 10.0086
ALA 20.0091
ALA 30.0091
ALA 40.0051
LYS 50.0019
MET 60.0033
GLN 70.0056
ARG 80.0048
LEU 90.0036
VAL 100.0061
LEU 110.0083
LEU 120.0080
LEU 130.0069
ALA 140.0087
ILE 150.0104
SER 160.0082
LEU 170.0065
LEU 180.0063
LEU 190.0063
TYR 200.0051
GLN 210.0027
ASP 220.0021
LEU 230.0027
PRO 240.0019
VAL 250.0021
ARG 260.0019
SER 270.0018
GLU 280.0020
PHE 290.0023
GLU 300.0020
LEU 310.0022
ASP 320.0024
ARG 330.0022
ILE 340.0025
CYS 350.0031
GLY 360.0034
TYR 370.0036
GLY 380.0029
THR 390.0027
ALA 400.0024
ARG 410.0024
CYS 420.0030
ARG 430.0030
LYS 440.0037
LYS 450.0035
CYS 460.0028
ARG 470.0025
SER 480.0024
GLN 490.0020
GLU 500.0023
TYR 510.0027
ARG 520.0035
ILE 530.0038
GLY 540.0046
ARG 550.0050
CYS 560.0043
PRO 570.0048
ASN 580.0045
THR 590.0052
TYR 600.0044
ALA 610.0037
CYS 620.0033
CYS 630.0029
LEU 640.0025
ARG 650.0021
LYS 660.0021
TRP 670.0021
ASP 680.0020
GLU 690.0019
SER 700.0020
LEU 710.0022
LEU 720.0022
ASN 730.0022
ARG 740.0024
THR 750.0026
LYS 760.0036
PRO 770.0039
GLU 780.0036
ALA 790.0039
ALA 800.0043
ALA 810.0101
LYS 820.0092
LYS 830.0074
GLU 840.0090
MET 850.0070
ASN 860.0065
LEU 870.0032
SER 880.0039
VAL 890.0033
GLY 900.0064
LEU 910.0067
GLY 920.0112
GLY 930.0120
GLY 940.0122
SER 950.0075
ASN 960.0059
LEU 970.0034
SER 980.0058
VAL 990.0065
GLY 1000.0096
LEU 1010.0078
GLY 1020.0087
GLU 1030.0126
ILE 1040.0150
GLY 1050.0196
GLY 1060.0260
GLY 1070.0217
SER 1080.0184
LYS 1090.0130
LEU 1100.0104
LEU 1110.0052
ASP 1120.0076
ILE 1130.0072
ASN 1140.0111
LEU 1150.0119
GLY 1160.0165
ARG 1170.0233
GLY 1180.0146
GLY 1190.0179
GLY 1200.0201
SER 1210.0124
MET 1220.0119
VAL 1230.0093
ASP 1240.0087
LEU 1250.0062
THR 1260.0060
PHE 1270.0078
GLY 1280.0081
GLY 1290.0102
VAL 1300.0114
GLY 1310.0185
GLY 1320.0188
GLY 1330.0169
SER 1340.0156
THR 1350.0130
PHE 1360.0113
THR 1370.0116
PHE 1380.0096
PHE 1390.0110
PRO 1400.0099
LEU 1410.0158
VAL 1420.0198
ILE 1430.0174
GLY 1440.0208
GLY 1450.0212
GLY 1460.0170
SER 1470.0138
ASP 1480.0145
ALA 1490.0111
MET 1500.0114
TYR 1510.0095
LEU 1520.0089
GLY 1530.0108
PHE 1540.0110
ALA 1550.0131
ALA 1560.0162
GLY 1570.0155
GLY 1580.0168
GLY 1590.0150
SER 1600.0152
ALA 1610.0132
GLY 1620.0125
GLY 1630.0102
GLU 1640.0081
ASN 1650.0067
HIS 1660.0061
VAL 1670.0060
ALA 1680.0069
PHE 1690.0078
GLY 1700.0086
PRO 1710.0271
GLY 1720.0207
PRO 1730.0181
GLY 1740.0091
VAL 1750.0065
ASP 1760.0010
LEU 1770.0012
THR 1780.0036
PHE 1790.0036
GLY 1800.0082
GLY 1810.0155
VAL 1820.0132
GLN 1830.0126
PHE 1840.0127
ALA 1850.0164
MET 1860.0226
VAL 1870.0322
ASN 1880.0389
ASN 1890.0631
GLY 1900.0718
PRO 1910.0652
GLY 1920.0256
PRO 1930.1014
GLY 1940.1089
GLU 1950.0287
SER 1960.0563
PHE 1970.0529
THR 1980.0305
ALA 1990.0391
GLN 2000.0323
PRO 2010.0257
ALA 2020.0217
ASP 2030.0256
MET 2040.0186
GLN 2050.0350
ALA 2060.0470
GLY 2070.0381
ILE 2080.0175
LYS 2090.0197
GLY 2100.0204
PRO 2110.0433
GLY 2120.0400
PRO 2130.0351
GLY 2140.0478
GLY 2150.0342
SER 2160.0583
ILE 2170.0213
GLN 2180.0378
VAL 2190.0310
ILE 2200.0870
ASN 2210.0650
GLY 2220.0470
SER 2230.0292
THR 2240.0105
ILE 2250.0143
GLY 2260.0468
THR 2270.0525
GLY 2280.0501
SER 2290.0430
LYS 2300.0313
LYS 2310.0212
THR 2320.0171
ILE 2330.0101
LEU 2340.0107
ILE 2350.0092
TYR 2360.0105
SER 2370.0118
ILE 2380.0107
ILE 2390.0092
GLY 2400.0091
VAL 2410.0070
LYS 2420.0055
LYS 2430.0060
GLY 2440.0054
THR 2450.0043
LEU 2460.0057
ALA 2470.0066
TRP 2480.0067
ALA 2490.0103
ARG 2500.0114
THR 2510.0181
GLY 2520.0227
PHE 2530.0220
SER 2540.0286
PRO 2550.0254
ALA 2560.0259
LYS 2570.0219
LYS 2580.0218
LEU 2590.0193
ASN 2600.0188
ALA 2610.0263
GLY 2620.0232
VAL 2630.0217
VAL 2640.0182
ARG 2650.0173
VAL 2660.0164
PHE 2670.0141
PHE 2680.0134
LEU 2690.0111
ASN 2700.0096
GLN 2710.0044
LYS 2720.0019
LYS 2730.0026
ALA 2740.0051
LYS 2750.0050
ASP 2760.0070
VAL 2770.0090
LEU 2780.0085
ARG 2790.0090
LYS 2800.0114
THR 2810.0153
SER 2820.0112
ARG 2830.0144
PRO 2840.0148
MET 2850.0218
VAL 2860.0262
ASP 2870.0237
LEU 2880.0180
THR 2890.0195
PHE 2900.0150
GLY 2910.0220
GLY 2920.0279

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.