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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 43  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0747
GLU 270.0134
PRO 280.0164
CYS 290.0159
VAL 300.0204
GLU 310.0213
VAL 320.0237
VAL 330.0245
PRO 340.0233
ASN 350.0199
ILE 360.0197
THR 370.0176
TYR 380.0151
GLN 390.0159
CYS 400.0131
MET 410.0158
GLU 420.0183
LEU 430.0170
ASN 440.0168
PHE 450.0120
TYR 460.0127
LYS 470.0080
ILE 480.0032
PRO 490.0034
ASP 500.0023
ASN 510.0060
LEU 520.0093
PRO 530.0131
PHE 540.0137
SER 550.0169
THR 560.0138
LYS 570.0139
ASN 580.0124
LEU 590.0090
ASP 600.0098
LEU 610.0080
SER 620.0106
PHE 630.0138
ASN 640.0126
PRO 650.0139
LEU 660.0104
ARG 670.0121
HIS 680.0113
LEU 690.0085
GLY 700.0105
SER 710.0117
TYR 720.0105
SER 730.0067
PHE 740.0055
PHE 750.0093
SER 760.0080
PHE 770.0091
PRO 780.0129
GLU 790.0139
LEU 800.0098
GLN 810.0100
VAL 820.0068
LEU 830.0037
ASP 840.0047
LEU 850.0045
SER 860.0075
ARG 870.0098
CYS 880.0093
GLU 890.0115
ILE 900.0097
GLN 910.0122
THR 920.0123
ILE 930.0099
GLU 940.0120
ASP 950.0133
GLY 960.0117
ALA 970.0089
TYR 980.0073
GLN 990.0111
SER 1000.0111
LEU 1010.0091
SER 1020.0116
HIS 1030.0110
LEU 1040.0073
SER 1050.0066
THR 1060.0040
LEU 1070.0009
ILE 1080.0021
LEU 1090.0037
THR 1100.0055
GLY 1110.0079
ASN 1120.0088
PRO 1130.0112
ILE 1140.0103
GLN 1150.0130
SER 1160.0128
LEU 1170.0110
ALA 1180.0123
LEU 1190.0120
GLY 1200.0117
ALA 1210.0093
PHE 1220.0073
SER 1230.0098
GLY 1240.0100
LEU 1250.0076
SER 1260.0097
SER 1270.0061
LEU 1280.0039
GLN 1290.0027
LYS 1300.0016
LEU 1310.0005
VAL 1320.0019
ALA 1330.0031
VAL 1340.0043
GLU 1350.0061
THR 1360.0059
ASN 1370.0064
LEU 1380.0052
ALA 1390.0054
SER 1400.0041
LEU 1410.0029
GLU 1420.0040
ASN 1430.0054
PHE 1440.0044
PRO 1450.0047
ILE 1460.0034
GLY 1470.0035
HIS 1480.0046
LEU 1490.0035
LYS 1500.0036
THR 1510.0035
LEU 1520.0010
LYS 1530.0019
GLU 1540.0017
LEU 1550.0014
ASN 1560.0020
VAL 1570.0030
ALA 1580.0039
HIS 1590.0050
ASN 1600.0047
LEU 1610.0051
ILE 1620.0041
GLN 1630.0047
SER 1640.0044
PHE 1650.0041
LYS 1660.0038
LEU 1670.0031
PRO 1680.0022
GLU 1690.0016
TYR 1700.0018
PHE 1710.0020
SER 1720.0017
ASN 1730.0020
LEU 1740.0018
THR 1750.0029
ASN 1760.0030
LEU 1770.0030
GLU 1780.0034
HIS 1790.0027
LEU 1800.0024
ASP 1810.0024
LEU 1820.0027
SER 1830.0034
SER 1840.0043
ASN 1850.0042
LYS 1860.0050
ILE 1870.0059
GLN 1880.0073
SER 1890.0075
ILE 1900.0070
TYR 1910.0082
CYS 1920.0084
THR 1930.0077
ASP 1940.0062
LEU 1950.0062
ARG 1960.0068
VAL 1970.0051
LEU 1980.0057
HIS 1990.0073
GLN 2000.0069
MET 2010.0067
PRO 2020.0075
LEU 2030.0074
LEU 2040.0058
ASN 2050.0053
LEU 2060.0041
SER 2070.0033
LEU 2080.0026
ASP 2090.0018
LEU 2100.0029
SER 2110.0034
LEU 2120.0054
ASN 2130.0057
PRO 2140.0075
MET 2150.0073
ASN 2160.0092
PHE 2170.0094
ILE 2180.0085
GLN 2190.0100
PRO 2200.0105
GLY 2210.0106
ALA 2220.0091
PHE 2230.0080
LYS 2240.0100
GLU 2250.0103
ILE 2260.0082
ARG 2270.0075
LEU 2280.0055
HIS 2290.0054
LYS 2300.0034
LEU 2310.0024
THR 2320.0014
LEU 2330.0029
ARG 2340.0040
ASN 2350.0065
ASN 2360.0068
PHE 2370.0083
ASP 2380.0107
SER 2390.0111
LEU 2400.0100
ASN 2410.0114
VAL 2420.0103
MET 2430.0080
LYS 2440.0089
THR 2450.0102
CYS 2460.0083
ILE 2470.0070
GLN 2480.0091
GLY 2490.0091
LEU 2500.0073
ALA 2510.0090
GLY 2520.0096
LEU 2530.0075
GLU 2540.0074
VAL 2550.0052
HIS 2560.0058
ARG 2570.0040
LEU 2580.0020
VAL 2590.0012
LEU 2600.0022
GLY 2610.0042
GLU 2620.0065
PHE 2630.0088
ARG 2640.0116
ASN 2650.0131
GLU 2660.0117
GLY 2670.0123
ASN 2680.0108
LEU 2690.0101
GLU 2700.0119
LYS 2710.0102
PHE 2720.0075
ASP 2730.0073
LYS 2740.0058
SER 2750.0072
ALA 2760.0064
LEU 2770.0047
GLU 2780.0065
GLY 2790.0071
LEU 2800.0051
CYS 2810.0068
ASN 2820.0085
LEU 2830.0069
THR 2840.0070
ILE 2850.0049
GLU 2860.0061
GLU 2870.0048
PHE 2880.0027
ARG 2890.0031
LEU 2900.0031
ALA 2910.0052
TYR 2920.0070
LEU 2930.0070
ASP 2940.0094
TYR 2950.0087
TYR 2960.0084
LEU 2970.0058
ASP 2980.0055
GLY 2990.0037
ILE 3000.0023
ILE 3010.0017
ASP 3020.0026
LEU 3030.0024
PHE 3040.0010
ASN 3050.0026
CYS 3060.0034
LEU 3070.0022
THR 3080.0034
ASN 3090.0050
VAL 3100.0043
SER 3110.0059
SER 3120.0059
PHE 3130.0047
SER 3140.0054
LEU 3150.0053
VAL 3160.0068
SER 3170.0078
VAL 3180.0065
THR 3190.0071
ILE 3200.0056
GLU 3210.0062
ARG 3220.0047
VAL 3230.0048
LYS 3240.0040
ASP 3250.0029
PHE 3260.0043
SER 3270.0042
TYR 3280.0034
ASN 3290.0045
PHE 3300.0042
GLY 3310.0051
TRP 3320.0054
GLN 3330.0069
HIS 3340.0071
LEU 3350.0064
GLU 3360.0071
LEU 3370.0072
VAL 3380.0084
ASN 3390.0090
CYS 3400.0077
LYS 3410.0079
PHE 3420.0070
GLY 3430.0068
GLN 3440.0070
PHE 3450.0074
PRO 3460.0064
THR 3470.0061
LEU 3480.0061
LYS 3490.0061
LEU 3500.0061
LYS 3510.0065
SER 3520.0066
LEU 3530.0069
LYS 3540.0080
ARG 3550.0083
LEU 3560.0079
THR 3570.0086
PHE 3580.0085
THR 3590.0091
SER 3600.0093
ASN 3610.0086
LYS 3620.0086
GLY 3630.0074
GLY 3640.0072
ASN 3650.0083
ALA 3660.0087
PHE 3670.0078
SER 3680.0078
GLU 3690.0078
VAL 3700.0077
ASP 3710.0076
LEU 3720.0066
PRO 3730.0068
SER 3740.0071
LEU 3750.0075
GLU 3760.0083
PHE 3770.0087
LEU 3780.0084
ASP 3790.0086
LEU 3800.0083
SER 3810.0086
ARG 3820.0083
ASN 3830.0087
GLY 3840.0082
LEU 3850.0083
SER 3860.0081
PHE 3870.0068
LYS 3880.0066
GLY 3890.0061
CYS 3900.0059
CYS 3910.0059
SER 3920.0061
GLN 3930.0069
SER 3940.0073
ASP 3950.0072
PHE 3960.0077
GLY 3970.0073
THR 3980.0076
ILE 3990.0077
SER 4000.0081
LEU 4010.0081
LYS 4020.0079
TYR 4030.0077
LEU 4040.0070
ASP 4050.0070
LEU 4060.0064
SER 4070.0057
PHE 4080.0060
ASN 4090.0068
GLY 4100.0072
VAL 4110.0068
ILE 4120.0052
THR 4130.0048
MET 4140.0042
SER 4150.0042
SER 4160.0046
ASN 4170.0040
PHE 4180.0049
LEU 4190.0056
GLY 4200.0068
LEU 4210.0065
GLU 4220.0067
GLN 4230.0076
LEU 4240.0066
GLU 4250.0068
HIS 4260.0060
LEU 4270.0048
ASP 4280.0042
PHE 4290.0036
GLN 4300.0034
HIS 4310.0037
SER 4320.0044
ASN 4330.0047
LEU 4340.0036
LYS 4350.0041
GLN 4360.0036
MET 4370.0032
SER 4380.0045
GLU 4390.0040
PHE 4400.0042
SER 4410.0050
VAL 4420.0038
PHE 4430.0045
LEU 4440.0055
SER 4450.0063
LEU 4460.0061
ARG 4470.0078
ASN 4480.0081
LEU 4490.0065
ILE 4500.0068
TYR 4510.0053
LEU 4520.0046
ASP 4530.0035
ILE 4540.0030
SER 4550.0028
HIS 4560.0029
THR 4570.0034
HIS 4580.0047
THR 4590.0037
ARG 4600.0056
VAL 4610.0063
ALA 4620.0077
PHE 4630.0078
ASN 4640.0088
GLY 4650.0083
ILE 4660.0064
PHE 4670.0069
ASN 4680.0081
GLY 4690.0084
LEU 4700.0079
SER 4710.0094
SER 4720.0093
LEU 4730.0079
GLU 4740.0077
VAL 4750.0062
LEU 4760.0058
LYS 4770.0051
MET 4780.0053
ALA 4790.0046
GLY 4800.0047
ASN 4810.0055
SER 4820.0071
PHE 4830.0082
GLN 4840.0093
GLU 4850.0101
ASN 4860.0094
PHE 4870.0103
LEU 4880.0096
PRO 4890.0107
ASP 4900.0111
ILE 4910.0102
PHE 4920.0098
THR 4930.0114
GLU 4940.0112
LEU 4950.0099
ARG 4960.0109
ASN 4970.0101
LEU 4980.0090
THR 4990.0082
PHE 5000.0071
LEU 5010.0072
ASP 5020.0065
LEU 5030.0071
SER 5040.0063
GLN 5050.0064
CYS 5060.0074
GLN 5070.0078
LEU 5080.0085
GLU 5090.0093
GLN 5100.0100
LEU 5110.0100
SER 5120.0112
PRO 5130.0110
THR 5140.0115
ALA 5150.0108
PHE 5160.0099
ASN 5170.0108
SER 5180.0111
LEU 5190.0100
SER 5200.0101
SER 5210.0094
LEU 5220.0089
GLN 5230.0077
VAL 5240.0071
LEU 5250.0074
ASN 5260.0069
MET 5270.0076
SER 5280.0072
HIS 5290.0078
ASN 5300.0083
ASN 5310.0086
PHE 5320.0089
PHE 5330.0087
SER 5340.0075
LEU 5350.0063
ASP 5360.0065
THR 5370.0061
PHE 5380.0072
PRO 5390.0085
TYR 5400.0075
LYS 5410.0071
CYS 5420.0087
LEU 5430.0081
ASN 5440.0080
SER 5450.0078
LEU 5460.0072
GLN 5470.0069
VAL 5480.0065
LEU 5490.0066
ASP 5500.0066
TYR 5510.0067
SER 5520.0073
LEU 5530.0086
ASN 5540.0089
HIS 5550.0092
ILE 5560.0076
MET 5570.0096
THR 5580.0084
SER 5590.0064
LYS 5600.0078
LYS 5610.0059
GLN 5620.0048
GLU 5630.0036
LEU 5640.0026
GLN 5650.0012
HIS 5660.0037
PHE 5670.0047
PRO 5680.0052
SER 5690.0050
SER 5700.0058
LEU 5710.0054
ALA 5720.0068
PHE 5730.0059
LEU 5740.0047
ASN 5750.0053
LEU 5760.0052
THR 5770.0064
GLN 5780.0092
ASN 5790.0094
ASP 5800.0118
PHE 5810.0103
ALA 5820.0147
CYS 5830.0152
THR 5840.0184
CYS 5850.0194
GLU 5860.0184
HIS 5870.0135
GLN 5880.0134
SER 5890.0104
PHE 5900.0073
LEU 5910.0093
GLN 5920.0101
TRP 5930.0066
ILE 5940.0053
LYS 5950.0080
ASP 5960.0083
GLN 5970.0049
ARG 5980.0046
GLN 5990.0060
LEU 6000.0048
LEU 6010.0026
VAL 6020.0056
GLU 6030.0039
VAL 6040.0033
GLU 6050.0060
ARG 6060.0085
MET 6070.0068
GLU 6080.0105
CYS 6090.0132
ALA 6100.0159
THR 6110.0183
PRO 6120.0200
SER 6130.0207
ASP 6140.0205
LYS 6150.0185
GLN 6160.0179
GLY 6170.0153
MET 6180.0140
PRO 6190.0104
VAL 6200.0099
LEU 6210.0089
SER 6220.0118
LEU 6230.0148
ASN 6240.0189
ILE 6250.0188
THR 6260.0237
CYS 6270.0296
GLU 10.0198
ALA 20.0209
ALA 30.0212
ALA 40.0114
LYS 50.0050
MET 60.0104
GLN 70.0147
ARG 80.0114
LEU 90.0098
VAL 100.0178
LEU 110.0206
LEU 120.0193
LEU 130.0181
ALA 140.0221
ILE 150.0243
SER 160.0198
LEU 170.0168
LEU 180.0159
LEU 190.0159
TYR 200.0139
GLN 210.0088
ASP 220.0075
LEU 230.0091
PRO 240.0072
VAL 250.0081
ARG 260.0095
SER 270.0090
GLU 280.0116
PHE 290.0120
GLU 300.0098
LEU 310.0103
ASP 320.0121
ARG 330.0109
ILE 340.0104
CYS 350.0122
GLY 360.0117
TYR 370.0117
GLY 380.0098
THR 390.0092
ALA 400.0095
ARG 410.0099
CYS 420.0129
ARG 430.0126
LYS 440.0153
LYS 450.0128
CYS 460.0077
ARG 470.0060
SER 480.0045
GLN 490.0038
GLU 500.0054
TYR 510.0072
ARG 520.0112
ILE 530.0134
GLY 540.0170
ARG 550.0193
CYS 560.0182
PRO 570.0211
ASN 580.0213
THR 590.0225
TYR 600.0189
ALA 610.0143
CYS 620.0126
CYS 630.0098
LEU 640.0079
ARG 650.0052
LYS 660.0040
TRP 670.0035
ASP 680.0027
GLU 690.0016
SER 700.0026
LEU 710.0050
LEU 720.0056
ASN 730.0054
ARG 740.0059
THR 750.0070
LYS 760.0082
PRO 770.0076
GLU 780.0077
ALA 790.0071
ALA 800.0066
ALA 810.0033
LYS 820.0033
LYS 830.0033
GLU 840.0035
MET 850.0036
ASN 860.0033
LEU 870.0017
SER 880.0021
VAL 890.0012
GLY 900.0025
LEU 910.0022
GLY 920.0044
GLY 930.0048
GLY 940.0057
SER 950.0037
ASN 960.0027
LEU 970.0021
SER 980.0030
VAL 990.0029
GLY 1000.0040
LEU 1010.0026
GLY 1020.0045
GLU 1030.0067
ILE 1040.0081
GLY 1050.0104
GLY 1060.0126
GLY 1070.0093
SER 1080.0056
LYS 1090.0038
LEU 1100.0026
LEU 1110.0031
ASP 1120.0053
ILE 1130.0050
ASN 1140.0074
LEU 1150.0073
GLY 1160.0096
ARG 1170.0121
GLY 1180.0075
GLY 1190.0091
GLY 1200.0098
SER 1210.0061
MET 1220.0059
VAL 1230.0038
ASP 1240.0035
LEU 1250.0015
THR 1260.0016
PHE 1270.0012
GLY 1280.0022
GLY 1290.0023
VAL 1300.0023
GLY 1310.0017
GLY 1320.0011
GLY 1330.0009
SER 1340.0015
THR 1350.0022
PHE 1360.0023
THR 1370.0037
PHE 1380.0031
PHE 1390.0045
PRO 1400.0041
LEU 1410.0049
VAL 1420.0066
ILE 1430.0069
GLY 1440.0084
GLY 1450.0098
GLY 1460.0096
SER 1470.0087
ASP 1480.0085
ALA 1490.0068
MET 1500.0057
TYR 1510.0021
LEU 1520.0025
GLY 1530.0025
PHE 1540.0030
ALA 1550.0031
ALA 1560.0030
GLY 1570.0032
GLY 1580.0028
GLY 1590.0024
SER 1600.0019
ALA 1610.0020
GLY 1620.0015
GLY 1630.0019
GLU 1640.0017
ASN 1650.0018
HIS 1660.0023
VAL 1670.0029
ALA 1680.0042
PHE 1690.0050
GLY 1700.0065
PRO 1710.0151
GLY 1720.0136
PRO 1730.0122
GLY 1740.0078
VAL 1750.0054
ASP 1760.0032
LEU 1770.0026
THR 1780.0023
PHE 1790.0016
GLY 1800.0017
GLY 1810.0030
VAL 1820.0019
GLN 1830.0015
PHE 1840.0008
ALA 1850.0010
MET 1860.0041
VAL 1870.0082
ASN 1880.0122
ASN 1890.0204
GLY 1900.0239
PRO 1910.0241
GLY 1920.0020
PRO 1930.0212
GLY 1940.0274
GLU 1950.0091
SER 1960.0046
PHE 1970.0063
THR 1980.0061
ALA 1990.0111
GLN 2000.0139
PRO 2010.0077
ALA 2020.0050
ASP 2030.0100
MET 2040.0107
GLN 2050.0112
ALA 2060.0200
GLY 2070.0177
ILE 2080.0062
LYS 2090.0076
GLY 2100.0103
PRO 2110.0215
GLY 2120.0204
PRO 2130.0106
GLY 2140.0196
GLY 2150.0170
SER 2160.0296
ILE 2170.0158
GLN 2180.0163
VAL 2190.0100
ILE 2200.0354
ASN 2210.0300
GLY 2220.0252
SER 2230.0224
THR 2240.0190
ILE 2250.0142
GLY 2260.0036
THR 2270.0078
GLY 2280.0111
SER 2290.0160
LYS 2300.0152
LYS 2310.0132
THR 2320.0159
ILE 2330.0154
LEU 2340.0179
ILE 2350.0206
TYR 2360.0211
SER 2370.0180
ILE 2380.0169
ILE 2390.0148
GLY 2400.0139
VAL 2410.0143
LYS 2420.0120
LYS 2430.0132
GLY 2440.0136
THR 2450.0124
LEU 2460.0189
ALA 2470.0189
TRP 2480.0203
ALA 2490.0199
ARG 2500.0214
THR 2510.0232
GLY 2520.0244
PHE 2530.0218
SER 2540.0253
PRO 2550.0226
ALA 2560.0296
LYS 2570.0304
LYS 2580.0301
LEU 2590.0415
ASN 2600.0490
ALA 2610.0582
GLY 2620.0377
VAL 2630.0309
VAL 2640.0117
ARG 2650.0155
VAL 2660.0173
PHE 2670.0171
PHE 2680.0115
LEU 2690.0130
ASN 2700.0114
GLN 2710.0066
LYS 2720.0025
LYS 2730.0069
ALA 2740.0104
LYS 2750.0099
ASP 2760.0176
VAL 2770.0210
LEU 2780.0182
ARG 2790.0192
LYS 2800.0252
THR 2810.0335
SER 2820.0259
ARG 2830.0335
PRO 2840.0385
MET 2850.0569
VAL 2860.0747
ASP 2870.0641
LEU 2880.0435
THR 2890.0465
PHE 2900.0357
GLY 2910.0501
GLY 2920.0678

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.