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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 44  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1035
GLU 270.0006
PRO 280.0010
CYS 290.0007
VAL 300.0014
GLU 310.0015
VAL 320.0023
VAL 330.0026
PRO 340.0023
ASN 350.0023
ILE 360.0023
THR 370.0018
TYR 380.0010
GLN 390.0013
CYS 400.0011
MET 410.0019
GLU 420.0026
LEU 430.0023
ASN 440.0028
PHE 450.0023
TYR 460.0029
LYS 470.0024
ILE 480.0016
PRO 490.0014
ASP 500.0019
ASN 510.0016
LEU 520.0012
PRO 530.0019
PHE 540.0023
SER 550.0024
THR 560.0016
LYS 570.0017
ASN 580.0013
LEU 590.0006
ASP 600.0010
LEU 610.0011
SER 620.0017
PHE 630.0024
ASN 640.0022
PRO 650.0027
LEU 660.0023
ARG 670.0025
HIS 680.0024
LEU 690.0020
GLY 700.0024
SER 710.0024
TYR 720.0023
SER 730.0019
PHE 740.0015
PHE 750.0021
SER 760.0020
PHE 770.0016
PRO 780.0021
GLU 790.0020
LEU 800.0013
GLN 810.0013
VAL 820.0009
LEU 830.0004
ASP 840.0009
LEU 850.0011
SER 860.0016
ARG 870.0021
CYS 880.0018
GLU 890.0023
ILE 900.0019
GLN 910.0024
THR 920.0023
ILE 930.0018
GLU 940.0021
ASP 950.0021
GLY 960.0019
ALA 970.0017
TYR 980.0012
GLN 990.0017
SER 1000.0018
LEU 1010.0013
SER 1020.0015
HIS 1030.0014
LEU 1040.0008
SER 1050.0010
THR 1060.0008
LEU 1070.0005
ILE 1080.0009
LEU 1090.0011
THR 1100.0015
GLY 1110.0019
ASN 1120.0018
PRO 1130.0022
ILE 1140.0019
GLN 1150.0023
SER 1160.0021
LEU 1170.0017
ALA 1180.0017
LEU 1190.0014
GLY 1200.0014
ALA 1210.0013
PHE 1220.0008
SER 1230.0010
GLY 1240.0011
LEU 1250.0007
SER 1260.0010
SER 1270.0007
LEU 1280.0005
GLN 1290.0008
LYS 1300.0008
LEU 1310.0007
VAL 1320.0010
ALA 1330.0011
VAL 1340.0014
GLU 1350.0017
THR 1360.0015
ASN 1370.0016
LEU 1380.0013
ALA 1390.0012
SER 1400.0009
LEU 1410.0008
GLU 1420.0009
ASN 1430.0009
PHE 1440.0008
PRO 1450.0006
ILE 1460.0005
GLY 1470.0004
HIS 1480.0003
LEU 1490.0003
LYS 1500.0005
THR 1510.0006
LEU 1520.0007
LYS 1530.0009
GLU 1540.0009
LEU 1550.0009
ASN 1560.0010
VAL 1570.0011
ALA 1580.0012
HIS 1590.0014
ASN 1600.0012
LEU 1610.0012
ILE 1620.0011
GLN 1630.0011
SER 1640.0011
PHE 1650.0011
LYS 1660.0012
LEU 1670.0011
PRO 1680.0010
GLU 1690.0010
TYR 1700.0008
PHE 1710.0009
SER 1720.0010
ASN 1730.0008
LEU 1740.0008
THR 1750.0009
ASN 1760.0009
LEU 1770.0009
GLU 1780.0009
HIS 1790.0009
LEU 1800.0009
ASP 1810.0009
LEU 1820.0009
SER 1830.0009
SER 1840.0009
ASN 1850.0009
LYS 1860.0010
ILE 1870.0011
GLN 1880.0013
SER 1890.0013
ILE 1900.0012
TYR 1910.0014
CYS 1920.0015
THR 1930.0016
ASP 1940.0014
LEU 1950.0013
ARG 1960.0015
VAL 1970.0013
LEU 1980.0013
HIS 1990.0015
GLN 2000.0015
MET 2010.0014
PRO 2020.0014
LEU 2030.0014
LEU 2040.0012
ASN 2050.0010
LEU 2060.0008
SER 2070.0006
LEU 2080.0006
ASP 2090.0005
LEU 2100.0006
SER 2110.0007
LEU 2120.0009
ASN 2130.0010
PRO 2140.0012
MET 2150.0011
ASN 2160.0013
PHE 2170.0013
ILE 2180.0011
GLN 2190.0013
PRO 2200.0012
GLY 2210.0013
ALA 2220.0012
PHE 2230.0010
LYS 2240.0012
GLU 2250.0013
ILE 2260.0011
ARG 2270.0010
LEU 2280.0007
HIS 2290.0007
LYS 2300.0005
LEU 2310.0003
THR 2320.0004
LEU 2330.0005
ARG 2340.0008
ASN 2350.0010
ASN 2360.0010
PHE 2370.0011
ASP 2380.0015
SER 2390.0015
LEU 2400.0012
ASN 2410.0012
VAL 2420.0012
MET 2430.0009
LYS 2440.0008
THR 2450.0009
CYS 2460.0008
ILE 2470.0006
GLN 2480.0007
GLY 2490.0008
LEU 2500.0006
ALA 2510.0007
GLY 2520.0009
LEU 2530.0007
GLU 2540.0008
VAL 2550.0006
HIS 2560.0008
ARG 2570.0008
LEU 2580.0006
VAL 2590.0008
LEU 2600.0008
GLY 2610.0010
GLU 2620.0012
PHE 2630.0015
ARG 2640.0020
ASN 2650.0021
GLU 2660.0019
GLY 2670.0019
ASN 2680.0017
LEU 2690.0015
GLU 2700.0018
LYS 2710.0016
PHE 2720.0014
ASP 2730.0013
LYS 2740.0011
SER 2750.0008
ALA 2760.0009
LEU 2770.0008
GLU 2780.0006
GLY 2790.0005
LEU 2800.0006
CYS 2810.0007
ASN 2820.0006
LEU 2830.0006
THR 2840.0008
ILE 2850.0008
GLU 2860.0011
GLU 2870.0012
PHE 2880.0011
ARG 2890.0013
LEU 2900.0013
ALA 2910.0015
TYR 2920.0016
LEU 2930.0016
ASP 2940.0018
TYR 2950.0017
TYR 2960.0019
LEU 2970.0017
ASP 2980.0018
GLY 2990.0017
ILE 3000.0016
ILE 3010.0015
ASP 3020.0014
LEU 3030.0013
PHE 3040.0014
ASN 3050.0013
CYS 3060.0011
LEU 3070.0013
THR 3080.0014
ASN 3090.0014
VAL 3100.0014
SER 3110.0015
SER 3120.0016
PHE 3130.0016
SER 3140.0017
LEU 3150.0017
VAL 3160.0018
SER 3170.0019
VAL 3180.0018
THR 3190.0019
ILE 3200.0018
GLU 3210.0020
ARG 3220.0018
VAL 3230.0018
LYS 3240.0019
ASP 3250.0017
PHE 3260.0018
SER 3270.0018
TYR 3280.0017
ASN 3290.0017
PHE 3300.0017
GLY 3310.0017
TRP 3320.0017
GLN 3330.0018
HIS 3340.0018
LEU 3350.0018
GLU 3360.0018
LEU 3370.0019
VAL 3380.0020
ASN 3390.0020
CYS 3400.0019
LYS 3410.0019
PHE 3420.0018
GLY 3430.0018
GLN 3440.0018
PHE 3450.0018
PRO 3460.0017
THR 3470.0017
LEU 3480.0018
LYS 3490.0017
LEU 3500.0017
LYS 3510.0017
SER 3520.0018
LEU 3530.0018
LYS 3540.0019
ARG 3550.0019
LEU 3560.0019
THR 3570.0019
PHE 3580.0019
THR 3590.0020
SER 3600.0020
ASN 3610.0019
LYS 3620.0018
GLY 3630.0017
GLY 3640.0015
ASN 3650.0015
ALA 3660.0014
PHE 3670.0015
SER 3680.0014
GLU 3690.0014
VAL 3700.0015
ASP 3710.0015
LEU 3720.0017
PRO 3730.0017
SER 3740.0018
LEU 3750.0018
GLU 3760.0020
PHE 3770.0020
LEU 3780.0018
ASP 3790.0019
LEU 3800.0017
SER 3810.0018
ARG 3820.0016
ASN 3830.0016
GLY 3840.0012
LEU 3850.0011
SER 3860.0008
PHE 3870.0008
LYS 3880.0007
GLY 3890.0008
CYS 3900.0010
CYS 3910.0013
SER 3920.0014
GLN 3930.0015
SER 3940.0013
ASP 3950.0013
PHE 3960.0015
GLY 3970.0016
THR 3980.0017
ILE 3990.0019
SER 4000.0020
LEU 4010.0020
LYS 4020.0021
TYR 4030.0020
LEU 4040.0017
ASP 4050.0017
LEU 4060.0015
SER 4070.0013
PHE 4080.0013
ASN 4090.0010
GLY 4100.0006
VAL 4110.0002
ILE 4120.0008
THR 4130.0007
MET 4140.0009
SER 4150.0010
SER 4160.0012
ASN 4170.0015
PHE 4180.0016
LEU 4190.0016
GLY 4200.0018
LEU 4210.0018
GLU 4220.0021
GLN 4230.0022
LEU 4240.0021
GLU 4250.0022
HIS 4260.0021
LEU 4270.0015
ASP 4280.0014
PHE 4290.0012
GLN 4300.0013
HIS 4310.0011
SER 4320.0009
ASN 4330.0007
LEU 4340.0008
LYS 4350.0007
GLN 4360.0010
MET 4370.0012
SER 4380.0014
GLU 4390.0014
PHE 4400.0015
SER 4410.0016
VAL 4420.0015
PHE 4430.0017
LEU 4440.0018
SER 4450.0019
LEU 4460.0020
ARG 4470.0022
ASN 4480.0023
LEU 4490.0021
ILE 4500.0022
TYR 4510.0020
LEU 4520.0018
ASP 4530.0016
ILE 4540.0014
SER 4550.0014
HIS 4560.0012
THR 4570.0010
HIS 4580.0008
THR 4590.0011
ARG 4600.0011
VAL 4610.0017
ALA 4620.0015
PHE 4630.0015
ASN 4640.0016
GLY 4650.0016
ILE 4660.0016
PHE 4670.0017
ASN 4680.0018
GLY 4690.0019
LEU 4700.0019
SER 4710.0020
SER 4720.0021
LEU 4730.0020
GLU 4740.0020
VAL 4750.0020
LEU 4760.0019
LYS 4770.0017
MET 4780.0016
ALA 4790.0016
GLY 4800.0015
ASN 4810.0015
SER 4820.0016
PHE 4830.0016
GLN 4840.0016
GLU 4850.0016
ASN 4860.0016
PHE 4870.0014
LEU 4880.0014
PRO 4890.0013
ASP 4900.0012
ILE 4910.0015
PHE 4920.0014
THR 4930.0013
GLU 4940.0016
LEU 4950.0016
ARG 4960.0015
ASN 4970.0016
LEU 4980.0016
THR 4990.0017
PHE 5000.0018
LEU 5010.0017
ASP 5020.0017
LEU 5030.0017
SER 5040.0018
GLN 5050.0018
CYS 5060.0018
GLN 5070.0019
LEU 5080.0016
GLU 5090.0015
GLN 5100.0013
LEU 5110.0011
SER 5120.0007
PRO 5130.0004
THR 5140.0004
ALA 5150.0008
PHE 5160.0009
ASN 5170.0005
SER 5180.0007
LEU 5190.0009
SER 5200.0008
SER 5210.0011
LEU 5220.0013
GLN 5230.0017
VAL 5240.0019
LEU 5250.0017
ASN 5260.0019
MET 5270.0018
SER 5280.0020
HIS 5290.0022
ASN 5300.0020
ASN 5310.0019
PHE 5320.0017
PHE 5330.0017
SER 5340.0014
LEU 5350.0015
ASP 5360.0012
THR 5370.0014
PHE 5380.0010
PRO 5390.0007
TYR 5400.0012
LYS 5410.0013
CYS 5420.0008
LEU 5430.0011
ASN 5440.0012
SER 5450.0015
LEU 5460.0017
GLN 5470.0023
VAL 5480.0024
LEU 5490.0021
ASP 5500.0023
TYR 5510.0021
SER 5520.0026
LEU 5530.0027
ASN 5540.0023
HIS 5550.0022
ILE 5560.0020
MET 5570.0021
THR 5580.0017
SER 5590.0015
LYS 5600.0010
LYS 5610.0011
GLN 5620.0018
GLU 5630.0018
LEU 5640.0021
GLN 5650.0025
HIS 5660.0020
PHE 5670.0021
PRO 5680.0021
SER 5690.0026
SER 5700.0025
LEU 5710.0026
ALA 5720.0033
PHE 5730.0032
LEU 5740.0029
ASN 5750.0030
LEU 5760.0028
THR 5770.0033
GLN 5780.0033
ASN 5790.0028
ASP 5800.0028
PHE 5810.0026
ALA 5820.0020
CYS 5830.0023
THR 5840.0017
CYS 5850.0018
GLU 5860.0014
HIS 5870.0017
GLN 5880.0024
SER 5890.0026
PHE 5900.0025
LEU 5910.0029
GLN 5920.0035
TRP 5930.0033
ILE 5940.0035
LYS 5950.0042
ASP 5960.0043
GLN 5970.0038
ARG 5980.0043
GLN 5990.0045
LEU 6000.0038
LEU 6010.0039
VAL 6020.0037
GLU 6030.0040
VAL 6040.0043
GLU 6050.0045
ARG 6060.0043
MET 6070.0042
GLU 6080.0040
CYS 6090.0033
ALA 6100.0032
THR 6110.0025
PRO 6120.0021
SER 6130.0034
ASP 6140.0027
LYS 6150.0028
GLN 6160.0041
GLY 6170.0046
MET 6180.0045
PRO 6190.0046
VAL 6200.0038
LEU 6210.0045
SER 6220.0048
LEU 6230.0040
ASN 6240.0039
ILE 6250.0036
THR 6260.0036
CYS 6270.0035
GLU 10.0032
ALA 20.0031
ALA 30.0037
ALA 40.0029
LYS 50.0022
MET 60.0030
GLN 70.0031
ARG 80.0024
LEU 90.0027
VAL 100.0036
LEU 110.0030
LEU 120.0030
LEU 130.0033
ALA 140.0034
ILE 150.0032
SER 160.0030
LEU 170.0026
LEU 180.0024
LEU 190.0026
TYR 200.0025
GLN 210.0018
ASP 220.0018
LEU 230.0021
PRO 240.0020
VAL 250.0020
ARG 260.0016
SER 270.0016
GLU 280.0017
PHE 290.0019
GLU 300.0018
LEU 310.0017
ASP 320.0016
ARG 330.0014
ILE 340.0015
CYS 350.0015
GLY 360.0016
TYR 370.0021
GLY 380.0016
THR 390.0012
ALA 400.0008
ARG 410.0009
CYS 420.0013
ARG 430.0014
LYS 440.0019
LYS 450.0017
CYS 460.0011
ARG 470.0011
SER 480.0012
GLN 490.0011
GLU 500.0009
TYR 510.0009
ARG 520.0011
ILE 530.0009
GLY 540.0015
ARG 550.0020
CYS 560.0020
PRO 570.0026
ASN 580.0026
THR 590.0026
TYR 600.0021
ALA 610.0015
CYS 620.0012
CYS 630.0009
LEU 640.0006
ARG 650.0006
LYS 660.0014
TRP 670.0015
ASP 680.0014
GLU 690.0012
SER 700.0014
LEU 710.0019
LEU 720.0020
ASN 730.0019
ARG 740.0019
THR 750.0022
LYS 760.0025
PRO 770.0024
GLU 780.0025
ALA 790.0027
ALA 800.0028
ALA 810.0111
LYS 820.0101
LYS 830.0093
GLU 840.0091
MET 850.0085
ASN 860.0083
LEU 870.0051
SER 880.0064
VAL 890.0041
GLY 900.0060
LEU 910.0051
GLY 920.0082
GLY 930.0124
GLY 940.0163
SER 950.0135
ASN 960.0102
LEU 970.0090
SER 980.0102
VAL 990.0092
GLY 1000.0110
LEU 1010.0069
GLY 1020.0117
GLU 1030.0179
ILE 1040.0209
GLY 1050.0273
GLY 1060.0283
GLY 1070.0178
SER 1080.0101
LYS 1090.0049
LEU 1100.0099
LEU 1110.0086
ASP 1120.0134
ILE 1130.0111
ASN 1140.0166
LEU 1150.0147
GLY 1160.0182
ARG 1170.0215
GLY 1180.0121
GLY 1190.0123
GLY 1200.0134
SER 1210.0082
MET 1220.0093
VAL 1230.0065
ASP 1240.0073
LEU 1250.0050
THR 1260.0051
PHE 1270.0049
GLY 1280.0055
GLY 1290.0065
VAL 1300.0055
GLY 1310.0068
GLY 1320.0073
GLY 1330.0072
SER 1340.0071
THR 1350.0070
PHE 1360.0062
THR 1370.0061
PHE 1380.0063
PHE 1390.0064
PRO 1400.0068
LEU 1410.0100
VAL 1420.0140
ILE 1430.0147
GLY 1440.0185
GLY 1450.0212
GLY 1460.0221
SER 1470.0201
ASP 1480.0191
ALA 1490.0162
MET 1500.0142
TYR 1510.0104
LEU 1520.0079
GLY 1530.0071
PHE 1540.0060
ALA 1550.0073
ALA 1560.0080
GLY 1570.0084
GLY 1580.0088
GLY 1590.0081
SER 1600.0074
ALA 1610.0057
GLY 1620.0051
GLY 1630.0051
GLU 1640.0047
ASN 1650.0048
HIS 1660.0059
VAL 1670.0060
ALA 1680.0079
PHE 1690.0085
GLY 1700.0106
PRO 1710.0254
GLY 1720.0213
PRO 1730.0186
GLY 1740.0105
VAL 1750.0068
ASP 1760.0030
LEU 1770.0028
THR 1780.0029
PHE 1790.0025
GLY 1800.0035
GLY 1810.0066
VAL 1820.0055
GLN 1830.0050
PHE 1840.0051
ALA 1850.0064
MET 1860.0101
VAL 1870.0185
ASN 1880.0266
ASN 1890.0413
GLY 1900.0494
PRO 1910.0465
GLY 1920.0130
PRO 1930.0581
GLY 1940.0633
GLU 1950.0225
SER 1960.0204
PHE 1970.0297
THR 1980.0289
ALA 1990.0463
GLN 2000.0473
PRO 2010.0259
ALA 2020.0090
ASP 2030.0276
MET 2040.0430
GLN 2050.0514
ALA 2060.0584
GLY 2070.0513
ILE 2080.0418
LYS 2090.0328
GLY 2100.0282
PRO 2110.0270
GLY 2120.0667
PRO 2130.0591
GLY 2140.0265
GLY 2150.0601
SER 2160.1035
ILE 2170.0764
GLN 2180.0186
VAL 2190.0199
ILE 2200.0772
ASN 2210.0524
GLY 2220.0398
SER 2230.0345
THR 2240.0246
ILE 2250.0138
GLY 2260.0289
THR 2270.0335
GLY 2280.0299
SER 2290.0256
LYS 2300.0174
LYS 2310.0173
THR 2320.0148
ILE 2330.0145
LEU 2340.0153
ILE 2350.0179
TYR 2360.0146
SER 2370.0123
ILE 2380.0091
ILE 2390.0065
GLY 2400.0037
VAL 2410.0041
LYS 2420.0027
LYS 2430.0023
GLY 2440.0031
THR 2450.0032
LEU 2460.0071
ALA 2470.0070
TRP 2480.0092
ALA 2490.0089
ARG 2500.0113
THR 2510.0129
GLY 2520.0044
PHE 2530.0096
SER 2540.0151
PRO 2550.0169
ALA 2560.0266
LYS 2570.0302
LYS 2580.0310
LEU 2590.0349
ASN 2600.0389
ALA 2610.0399
GLY 2620.0318
VAL 2630.0329
VAL 2640.0263
ARG 2650.0265
VAL 2660.0271
PHE 2670.0209
PHE 2680.0170
LEU 2690.0121
ASN 2700.0136
GLN 2710.0048
LYS 2720.0046
LYS 2730.0050
ALA 2740.0032
LYS 2750.0008
ASP 2760.0028
VAL 2770.0018
LEU 2780.0012
ARG 2790.0022
LYS 2800.0028
THR 2810.0041
SER 2820.0044
ARG 2830.0048
PRO 2840.0055
MET 2850.0054
VAL 2860.0074
ASP 2870.0084
LEU 2880.0033
THR 2890.0069
PHE 2900.0029
GLY 2910.0052
GLY 2920.0159

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.