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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 45  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0655
GLU 270.0146
PRO 280.0113
CYS 290.0069
VAL 300.0051
GLU 310.0099
VAL 320.0118
VAL 330.0161
PRO 340.0175
ASN 350.0169
ILE 360.0144
THR 370.0102
TYR 380.0056
GLN 390.0028
CYS 400.0047
MET 410.0080
GLU 420.0122
LEU 430.0123
ASN 440.0165
PHE 450.0151
TYR 460.0187
LYS 470.0173
ILE 480.0123
PRO 490.0123
ASP 500.0156
ASN 510.0163
LEU 520.0129
PRO 530.0151
PHE 540.0146
SER 550.0148
THR 560.0101
LYS 570.0096
ASN 580.0074
LEU 590.0031
ASP 600.0050
LEU 610.0071
SER 620.0106
PHE 630.0144
ASN 640.0142
PRO 650.0179
LEU 660.0157
ARG 670.0176
HIS 680.0167
LEU 690.0133
GLY 700.0138
SER 710.0116
TYR 720.0103
SER 730.0108
PHE 740.0069
PHE 750.0094
SER 760.0109
PHE 770.0076
PRO 780.0084
GLU 790.0093
LEU 800.0054
GLN 810.0077
VAL 820.0074
LEU 830.0058
ASP 840.0084
LEU 850.0102
SER 860.0136
ARG 870.0155
CYS 880.0140
GLU 890.0175
ILE 900.0157
GLN 910.0185
THR 920.0168
ILE 930.0134
GLU 940.0130
ASP 950.0108
GLY 960.0077
ALA 970.0091
TYR 980.0053
GLN 990.0041
SER 1000.0040
LEU 1010.0019
SER 1020.0038
HIS 1030.0062
LEU 1040.0052
SER 1050.0092
THR 1060.0100
LEU 1070.0095
ILE 1080.0116
LEU 1090.0128
THR 1100.0154
GLY 1110.0172
ASN 1120.0157
PRO 1130.0183
ILE 1140.0170
GLN 1150.0190
SER 1160.0172
LEU 1170.0145
ALA 1180.0130
LEU 1190.0116
GLY 1200.0090
ALA 1210.0097
PHE 1220.0086
SER 1230.0064
GLY 1240.0038
LEU 1250.0055
SER 1260.0060
SER 1270.0078
LEU 1280.0088
GLN 1290.0111
LYS 1300.0119
LEU 1310.0119
VAL 1320.0136
ALA 1330.0142
VAL 1340.0162
GLU 1350.0172
THR 1360.0158
ASN 1370.0164
LEU 1380.0154
ALA 1390.0148
SER 1400.0141
LEU 1410.0137
GLU 1420.0146
ASN 1430.0142
PHE 1440.0137
PRO 1450.0127
ILE 1460.0126
GLY 1470.0128
HIS 1480.0112
LEU 1490.0109
LYS 1500.0115
THR 1510.0111
LEU 1520.0115
LYS 1530.0125
GLU 1540.0131
LEU 1550.0132
ASN 1560.0139
VAL 1570.0140
ALA 1580.0148
HIS 1590.0153
ASN 1600.0146
LEU 1610.0144
ILE 1620.0121
GLN 1630.0113
SER 1640.0116
PHE 1650.0117
LYS 1660.0127
LEU 1670.0141
PRO 1680.0143
GLU 1690.0146
TYR 1700.0142
PHE 1710.0140
SER 1720.0145
ASN 1730.0136
LEU 1740.0132
THR 1750.0134
ASN 1760.0127
LEU 1770.0118
GLU 1780.0121
HIS 1790.0122
LEU 1800.0123
ASP 1810.0125
LEU 1820.0114
SER 1830.0111
SER 1840.0110
ASN 1850.0110
LYS 1860.0105
ILE 1870.0089
GLN 1880.0070
SER 1890.0069
ILE 1900.0081
TYR 1910.0085
CYS 1920.0103
THR 1930.0115
ASP 1940.0115
LEU 1950.0121
ARG 1960.0134
VAL 1970.0137
LEU 1980.0131
HIS 1990.0136
GLN 2000.0148
MET 2010.0147
PRO 2020.0139
LEU 2030.0144
LEU 2040.0131
ASN 2050.0117
LEU 2060.0102
SER 2070.0090
LEU 2080.0087
ASP 2090.0082
LEU 2100.0080
SER 2110.0075
LEU 2120.0061
ASN 2130.0067
PRO 2140.0055
MET 2150.0049
ASN 2160.0040
PHE 2170.0037
ILE 2180.0054
GLN 2190.0064
PRO 2200.0078
GLY 2210.0098
ALA 2220.0091
PHE 2230.0094
LYS 2240.0111
GLU 2250.0126
ILE 2260.0114
ARG 2270.0090
LEU 2280.0075
HIS 2290.0069
LYS 2300.0056
LEU 2310.0051
THR 2320.0053
LEU 2330.0050
ARG 2340.0046
ASN 2350.0049
ASN 2360.0044
PHE 2370.0058
ASP 2380.0076
SER 2390.0089
LEU 2400.0098
ASN 2410.0098
VAL 2420.0067
MET 2430.0068
LYS 2440.0087
THR 2450.0074
CYS 2460.0060
ILE 2470.0064
GLN 2480.0079
GLY 2490.0064
LEU 2500.0072
ALA 2510.0097
GLY 2520.0109
LEU 2530.0085
GLU 2540.0086
VAL 2550.0059
HIS 2560.0052
ARG 2570.0045
LEU 2580.0049
VAL 2590.0044
LEU 2600.0052
GLY 2610.0057
GLU 2620.0063
PHE 2630.0068
ARG 2640.0088
ASN 2650.0098
GLU 2660.0090
GLY 2670.0095
ASN 2680.0094
LEU 2690.0099
GLU 2700.0122
LYS 2710.0128
PHE 2720.0117
ASP 2730.0131
LYS 2740.0134
SER 2750.0130
ALA 2760.0112
LEU 2770.0101
GLU 2780.0116
GLY 2790.0101
LEU 2800.0095
CYS 2810.0116
ASN 2820.0113
LEU 2830.0091
THR 2840.0091
ILE 2850.0070
GLU 2860.0066
GLU 2870.0059
PHE 2880.0064
ARG 2890.0062
LEU 2900.0069
ALA 2910.0065
TYR 2920.0075
LEU 2930.0090
ASP 2940.0103
TYR 2950.0115
TYR 2960.0120
LEU 2970.0116
ASP 2980.0126
GLY 2990.0119
ILE 3000.0111
ILE 3010.0123
ASP 3020.0128
LEU 3030.0116
PHE 3040.0105
ASN 3050.0116
CYS 3060.0110
LEU 3070.0095
THR 3080.0092
ASN 3090.0090
VAL 3100.0081
SER 3110.0070
SER 3120.0066
PHE 3130.0071
SER 3140.0068
LEU 3150.0074
VAL 3160.0072
SER 3170.0079
VAL 3180.0089
THR 3190.0097
ILE 3200.0098
GLU 3210.0104
ARG 3220.0094
VAL 3230.0079
LYS 3240.0078
ASP 3250.0087
PHE 3260.0073
SER 3270.0067
TYR 3280.0076
ASN 3290.0073
PHE 3300.0079
GLY 3310.0082
TRP 3320.0077
GLN 3330.0076
HIS 3340.0069
LEU 3350.0063
GLU 3360.0061
LEU 3370.0067
VAL 3380.0066
ASN 3390.0070
CYS 3400.0076
LYS 3410.0080
PHE 3420.0070
GLY 3430.0073
GLN 3440.0057
PHE 3450.0045
PRO 3460.0053
THR 3470.0041
LEU 3480.0050
LYS 3490.0056
LEU 3500.0069
LYS 3510.0079
SER 3520.0094
LEU 3530.0081
LYS 3540.0092
ARG 3550.0080
LEU 3560.0060
THR 3570.0061
PHE 3580.0054
THR 3590.0054
SER 3600.0054
ASN 3610.0053
LYS 3620.0063
GLY 3630.0064
GLY 3640.0049
ASN 3650.0029
ALA 3660.0018
PHE 3670.0027
SER 3680.0036
GLU 3690.0052
VAL 3700.0057
ASP 3710.0071
LEU 3720.0083
PRO 3730.0117
SER 3740.0126
LEU 3750.0100
GLU 3760.0110
PHE 3770.0082
LEU 3780.0067
ASP 3790.0058
LEU 3800.0043
SER 3810.0040
ARG 3820.0037
ASN 3830.0030
GLY 3840.0018
LEU 3850.0014
SER 3860.0012
PHE 3870.0035
LYS 3880.0055
GLY 3890.0071
CYS 3900.0057
CYS 3910.0065
SER 3920.0090
GLN 3930.0106
SER 3940.0107
ASP 3950.0082
PHE 3960.0084
GLY 3970.0107
THR 3980.0114
ILE 3990.0142
SER 4000.0140
LEU 4010.0103
LYS 4020.0096
TYR 4030.0081
LEU 4040.0063
ASP 4050.0050
LEU 4060.0033
SER 4070.0032
PHE 4080.0030
ASN 4090.0021
GLY 4100.0021
VAL 4110.0026
ILE 4120.0036
THR 4130.0052
MET 4140.0056
SER 4150.0075
SER 4160.0078
ASN 4170.0080
PHE 4180.0080
LEU 4190.0099
GLY 4200.0110
LEU 4210.0094
GLU 4220.0098
GLN 4230.0102
LEU 4240.0083
GLU 4250.0080
HIS 4260.0068
LEU 4270.0051
ASP 4280.0043
PHE 4290.0034
GLN 4300.0034
HIS 4310.0032
SER 4320.0028
ASN 4330.0033
LEU 4340.0036
LYS 4350.0049
GLN 4360.0059
MET 4370.0054
SER 4380.0062
GLU 4390.0073
PHE 4400.0067
SER 4410.0056
VAL 4420.0060
PHE 4430.0055
LEU 4440.0065
SER 4450.0075
LEU 4460.0066
ARG 4470.0070
ASN 4480.0074
LEU 4490.0061
ILE 4500.0060
TYR 4510.0053
LEU 4520.0041
ASP 4530.0039
ILE 4540.0037
SER 4550.0038
HIS 4560.0039
THR 4570.0040
HIS 4580.0048
THR 4590.0047
ARG 4600.0055
VAL 4610.0051
ALA 4620.0067
PHE 4630.0062
ASN 4640.0055
GLY 4650.0050
ILE 4660.0048
PHE 4670.0047
ASN 4680.0052
GLY 4690.0052
LEU 4700.0044
SER 4710.0042
SER 4720.0045
LEU 4730.0041
GLU 4740.0041
VAL 4750.0040
LEU 4760.0038
LYS 4770.0040
MET 4780.0043
ALA 4790.0043
GLY 4800.0046
ASN 4810.0049
SER 4820.0060
PHE 4830.0062
GLN 4840.0068
GLU 4850.0074
ASN 4860.0070
PHE 4870.0070
LEU 4880.0063
PRO 4890.0068
ASP 4900.0065
ILE 4910.0060
PHE 4920.0054
THR 4930.0058
GLU 4940.0051
LEU 4950.0042
ARG 4960.0040
ASN 4970.0035
LEU 4980.0037
THR 4990.0037
PHE 5000.0037
LEU 5010.0041
ASP 5020.0042
LEU 5030.0047
SER 5040.0044
GLN 5050.0046
CYS 5060.0051
GLN 5070.0058
LEU 5080.0061
GLU 5090.0064
GLN 5100.0068
LEU 5110.0067
SER 5120.0078
PRO 5130.0079
THR 5140.0077
ALA 5150.0070
PHE 5160.0063
ASN 5170.0069
SER 5180.0065
LEU 5190.0054
SER 5200.0054
SER 5210.0044
LEU 5220.0047
GLN 5230.0041
VAL 5240.0037
LEU 5250.0041
ASN 5260.0038
MET 5270.0045
SER 5280.0039
HIS 5290.0041
ASN 5300.0047
ASN 5310.0051
PHE 5320.0051
PHE 5330.0048
SER 5340.0048
LEU 5350.0048
ASP 5360.0059
THR 5370.0063
PHE 5380.0076
PRO 5390.0074
TYR 5400.0067
LYS 5410.0077
CYS 5420.0072
LEU 5430.0062
ASN 5440.0064
SER 5450.0054
LEU 5460.0049
GLN 5470.0047
VAL 5480.0039
LEU 5490.0040
ASP 5500.0034
TYR 5510.0037
SER 5520.0028
LEU 5530.0029
ASN 5540.0035
HIS 5550.0034
ILE 5560.0030
MET 5570.0029
THR 5580.0030
SER 5590.0040
LYS 5600.0052
LYS 5610.0065
GLN 5620.0062
GLU 5630.0071
LEU 5640.0059
GLN 5650.0071
HIS 5660.0078
PHE 5670.0064
PRO 5680.0065
SER 5690.0066
SER 5700.0059
LEU 5710.0053
ALA 5720.0056
PHE 5730.0045
LEU 5740.0039
ASN 5750.0031
LEU 5760.0026
THR 5770.0022
GLN 5780.0022
ASN 5790.0023
ASP 5800.0030
PHE 5810.0026
ALA 5820.0038
CYS 5830.0051
THR 5840.0054
CYS 5850.0053
GLU 5860.0033
HIS 5870.0023
GLN 5880.0038
SER 5890.0039
PHE 5900.0034
LEU 5910.0040
GLN 5920.0053
TRP 5930.0053
ILE 5940.0047
LYS 5950.0065
ASP 5960.0076
GLN 5970.0063
ARG 5980.0060
GLN 5990.0071
LEU 6000.0060
LEU 6010.0041
VAL 6020.0050
GLU 6030.0042
VAL 6040.0052
GLU 6050.0051
ARG 6060.0032
MET 6070.0037
GLU 6080.0048
CYS 6090.0053
ALA 6100.0058
THR 6110.0065
PRO 6120.0085
SER 6130.0105
ASP 6140.0112
LYS 6150.0093
GLN 6160.0088
GLY 6170.0079
MET 6180.0080
PRO 6190.0067
VAL 6200.0055
LEU 6210.0070
SER 6220.0089
LEU 6230.0083
ASN 6240.0097
ILE 6250.0085
THR 6260.0101
CYS 6270.0106
GLU 10.0655
ALA 20.0501
ALA 30.0582
ALA 40.0620
LYS 50.0414
MET 60.0333
GLN 70.0475
ARG 80.0535
LEU 90.0421
VAL 100.0422
LEU 110.0512
LEU 120.0540
LEU 130.0494
ALA 140.0521
ILE 150.0619
SER 160.0556
LEU 170.0508
LEU 180.0451
LEU 190.0472
TYR 200.0481
GLN 210.0342
ASP 220.0282
LEU 230.0278
PRO 240.0270
VAL 250.0332
ARG 260.0238
SER 270.0175
GLU 280.0218
PHE 290.0211
GLU 300.0140
LEU 310.0052
ASP 320.0046
ARG 330.0036
ILE 340.0034
CYS 350.0054
GLY 360.0049
TYR 370.0052
GLY 380.0053
THR 390.0082
ALA 400.0081
ARG 410.0065
CYS 420.0070
ARG 430.0088
LYS 440.0120
LYS 450.0136
CYS 460.0135
ARG 470.0125
SER 480.0138
GLN 490.0141
GLU 500.0145
TYR 510.0166
ARG 520.0166
ILE 530.0170
GLY 540.0164
ARG 550.0151
CYS 560.0106
PRO 570.0110
ASN 580.0117
THR 590.0145
TYR 600.0123
ALA 610.0141
CYS 620.0131
CYS 630.0131
LEU 640.0141
ARG 650.0138
LYS 660.0168
TRP 670.0178
ASP 680.0164
GLU 690.0150
SER 700.0161
LEU 710.0184
LEU 720.0184
ASN 730.0173
ARG 740.0192
THR 750.0212
LYS 760.0193
PRO 770.0211
GLU 780.0218
ALA 790.0224
ALA 800.0234
ALA 810.0090
LYS 820.0076
LYS 830.0056
GLU 840.0039
MET 850.0023
ASN 860.0011
LEU 870.0010
SER 880.0009
VAL 890.0009
GLY 900.0010
LEU 910.0015
GLY 920.0019
GLY 930.0023
GLY 940.0021
SER 950.0018
ASN 960.0011
LEU 970.0011
SER 980.0009
VAL 990.0009
GLY 1000.0009
LEU 1010.0018
GLY 1020.0032
GLU 1030.0046
ILE 1040.0045
GLY 1050.0062
GLY 1060.0065
GLY 1070.0043
SER 1080.0034
LYS 1090.0017
LEU 1100.0025
LEU 1110.0022
ASP 1120.0021
ILE 1130.0018
ASN 1140.0019
LEU 1150.0017
GLY 1160.0028
ARG 1170.0030
GLY 1180.0030
GLY 1190.0023
GLY 1200.0015
SER 1210.0014
MET 1220.0013
VAL 1230.0008
ASP 1240.0008
LEU 1250.0004
THR 1260.0006
PHE 1270.0009
GLY 1280.0014
GLY 1290.0020
VAL 1300.0024
GLY 1310.0027
GLY 1320.0024
GLY 1330.0016
SER 1340.0014
THR 1350.0008
PHE 1360.0013
THR 1370.0015
PHE 1380.0014
PHE 1390.0017
PRO 1400.0017
LEU 1410.0019
VAL 1420.0023
ILE 1430.0025
GLY 1440.0033
GLY 1450.0036
GLY 1460.0035
SER 1470.0025
ASP 1480.0018
ALA 1490.0014
MET 1500.0012
TYR 1510.0015
LEU 1520.0013
GLY 1530.0018
PHE 1540.0017
ALA 1550.0022
ALA 1560.0020
GLY 1570.0015
GLY 1580.0013
GLY 1590.0007
SER 1600.0013
ALA 1610.0011
GLY 1620.0014
GLY 1630.0013
GLU 1640.0011
ASN 1650.0005
HIS 1660.0004
VAL 1670.0005
ALA 1680.0010
PHE 1690.0013
GLY 1700.0019
PRO 1710.0035
GLY 1720.0037
PRO 1730.0038
GLY 1740.0029
VAL 1750.0019
ASP 1760.0013
LEU 1770.0009
THR 1780.0004
PHE 1790.0004
GLY 1800.0005
GLY 1810.0003
VAL 1820.0004
GLN 1830.0008
PHE 1840.0013
ALA 1850.0018
MET 1860.0031
VAL 1870.0041
ASN 1880.0047
ASN 1890.0057
GLY 1900.0063
PRO 1910.0042
GLY 1920.0044
PRO 1930.0061
GLY 1940.0057
GLU 1950.0031
SER 1960.0047
PHE 1970.0053
THR 1980.0054
ALA 1990.0060
GLN 2000.0067
PRO 2010.0026
ALA 2020.0027
ASP 2030.0037
MET 2040.0065
GLN 2050.0073
ALA 2060.0093
GLY 2070.0056
ILE 2080.0040
LYS 2090.0032
GLY 2100.0077
PRO 2110.0085
GLY 2120.0036
PRO 2130.0080
GLY 2140.0055
GLY 2150.0045
SER 2160.0076
ILE 2170.0071
GLN 2180.0049
VAL 2190.0043
ILE 2200.0049
ASN 2210.0049
GLY 2220.0059
SER 2230.0069
THR 2240.0065
ILE 2250.0076
GLY 2260.0080
THR 2270.0082
GLY 2280.0092
SER 2290.0091
LYS 2300.0089
LYS 2310.0075
THR 2320.0082
ILE 2330.0066
LEU 2340.0076
ILE 2350.0078
TYR 2360.0081
SER 2370.0083
ILE 2380.0078
ILE 2390.0073
GLY 2400.0072
VAL 2410.0067
LYS 2420.0054
LYS 2430.0052
GLY 2440.0047
THR 2450.0044
LEU 2460.0059
ALA 2470.0061
TRP 2480.0060
ALA 2490.0069
ARG 2500.0072
THR 2510.0078
GLY 2520.0075
PHE 2530.0064
SER 2540.0077
PRO 2550.0075
ALA 2560.0086
LYS 2570.0092
LYS 2580.0093
LEU 2590.0104
ASN 2600.0115
ALA 2610.0099
GLY 2620.0078
VAL 2630.0049
VAL 2640.0043
ARG 2650.0021
VAL 2660.0026
PHE 2670.0027
PHE 2680.0036
LEU 2690.0038
ASN 2700.0048
GLN 2710.0043
LYS 2720.0045
LYS 2730.0048
ALA 2740.0046
LYS 2750.0045
ASP 2760.0052
VAL 2770.0051
LEU 2780.0041
ARG 2790.0042
LYS 2800.0051
THR 2810.0072
SER 2820.0068
ARG 2830.0067
PRO 2840.0063
MET 2850.0065
VAL 2860.0088
ASP 2870.0092
LEU 2880.0086
THR 2890.0092
PHE 2900.0087
GLY 2910.0098
GLY 2920.0112

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.