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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 46  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0877
GLU 270.0021
PRO 280.0043
CYS 290.0040
VAL 300.0059
GLU 310.0061
VAL 320.0079
VAL 330.0083
PRO 340.0072
ASN 350.0063
ILE 360.0068
THR 370.0058
TYR 380.0042
GLN 390.0049
CYS 400.0038
MET 410.0056
GLU 420.0069
LEU 430.0063
ASN 440.0070
PHE 450.0052
TYR 460.0064
LYS 470.0049
ILE 480.0028
PRO 490.0019
ASP 500.0030
ASN 510.0017
LEU 520.0019
PRO 530.0042
PHE 540.0055
SER 550.0064
THR 560.0047
LYS 570.0052
ASN 580.0044
LEU 590.0026
ASP 600.0031
LEU 610.0026
SER 620.0040
PHE 630.0055
ASN 640.0051
PRO 650.0060
LEU 660.0048
ARG 670.0051
HIS 680.0051
LEU 690.0041
GLY 700.0052
SER 710.0056
TYR 720.0055
SER 730.0042
PHE 740.0034
PHE 750.0050
SER 760.0045
PHE 770.0041
PRO 780.0057
GLU 790.0058
LEU 800.0040
GLN 810.0043
VAL 820.0028
LEU 830.0014
ASP 840.0018
LEU 850.0017
SER 860.0031
ARG 870.0040
CYS 880.0038
GLU 890.0046
ILE 900.0039
GLN 910.0047
THR 920.0048
ILE 930.0038
GLU 940.0049
ASP 950.0053
GLY 960.0049
ALA 970.0040
TYR 980.0033
GLN 990.0048
SER 1000.0050
LEU 1010.0040
SER 1020.0048
HIS 1030.0047
LEU 1040.0032
SER 1050.0032
THR 1060.0023
LEU 1070.0009
ILE 1080.0013
LEU 1090.0014
THR 1100.0023
GLY 1110.0032
ASN 1120.0031
PRO 1130.0039
ILE 1140.0033
GLN 1150.0042
SER 1160.0042
LEU 1170.0033
ALA 1180.0038
LEU 1190.0034
GLY 1200.0039
ALA 1210.0031
PHE 1220.0023
SER 1230.0034
GLY 1240.0037
LEU 1250.0029
SER 1260.0039
SER 1270.0027
LEU 1280.0019
GLN 1290.0022
LYS 1300.0018
LEU 1310.0012
VAL 1320.0013
ALA 1330.0011
VAL 1340.0019
GLU 1350.0022
THR 1360.0017
ASN 1370.0021
LEU 1380.0017
ALA 1390.0017
SER 1400.0017
LEU 1410.0017
GLU 1420.0016
ASN 1430.0011
PHE 1440.0008
PRO 1450.0004
ILE 1460.0009
GLY 1470.0009
HIS 1480.0011
LEU 1490.0012
LYS 1500.0018
THR 1510.0020
LEU 1520.0017
LYS 1530.0019
GLU 1540.0018
LEU 1550.0017
ASN 1560.0018
VAL 1570.0017
ALA 1580.0020
HIS 1590.0021
ASN 1600.0019
LEU 1610.0021
ILE 1620.0030
GLN 1630.0034
SER 1640.0034
PHE 1650.0031
LYS 1660.0034
LEU 1670.0028
PRO 1680.0025
GLU 1690.0027
TYR 1700.0021
PHE 1710.0023
SER 1720.0024
ASN 1730.0021
LEU 1740.0020
THR 1750.0023
ASN 1760.0021
LEU 1770.0020
GLU 1780.0018
HIS 1790.0017
LEU 1800.0019
ASP 1810.0018
LEU 1820.0022
SER 1830.0023
SER 1840.0026
ASN 1850.0028
LYS 1860.0034
ILE 1870.0038
GLN 1880.0044
SER 1890.0042
ILE 1900.0037
TYR 1910.0043
CYS 1920.0042
THR 1930.0046
ASP 1940.0039
LEU 1950.0035
ARG 1960.0041
VAL 1970.0035
LEU 1980.0032
HIS 1990.0038
GLN 2000.0039
MET 2010.0035
PRO 2020.0033
LEU 2030.0032
LEU 2040.0026
ASN 2050.0020
LEU 2060.0016
SER 2070.0010
LEU 2080.0014
ASP 2090.0015
LEU 2100.0022
SER 2110.0023
LEU 2120.0032
ASN 2130.0035
PRO 2140.0042
MET 2150.0038
ASN 2160.0044
PHE 2170.0042
ILE 2180.0034
GLN 2190.0039
PRO 2200.0034
GLY 2210.0034
ALA 2220.0034
PHE 2230.0026
LYS 2240.0030
GLU 2250.0032
ILE 2260.0027
ARG 2270.0022
LEU 2280.0014
HIS 2290.0012
LYS 2300.0004
LEU 2310.0005
THR 2320.0010
LEU 2330.0017
ARG 2340.0025
ASN 2350.0035
ASN 2360.0033
PHE 2370.0039
ASP 2380.0050
SER 2390.0049
LEU 2400.0042
ASN 2410.0040
VAL 2420.0040
MET 2430.0032
LYS 2440.0026
THR 2450.0029
CYS 2460.0026
ILE 2470.0018
GLN 2480.0018
GLY 2490.0024
LEU 2500.0014
ALA 2510.0013
GLY 2520.0017
LEU 2530.0013
GLU 2540.0016
VAL 2550.0009
HIS 2560.0017
ARG 2570.0016
LEU 2580.0013
VAL 2590.0018
LEU 2600.0022
GLY 2610.0031
GLU 2620.0037
PHE 2630.0044
ARG 2640.0055
ASN 2650.0059
GLU 2660.0055
GLY 2670.0058
ASN 2680.0054
LEU 2690.0050
GLU 2700.0058
LYS 2710.0052
PHE 2720.0047
ASP 2730.0046
LYS 2740.0042
SER 2750.0032
ALA 2760.0031
LEU 2770.0027
GLU 2780.0022
GLY 2790.0012
LEU 2800.0015
CYS 2810.0017
ASN 2820.0006
LEU 2830.0008
THR 2840.0017
ILE 2850.0019
GLU 2860.0027
GLU 2870.0029
PHE 2880.0029
ARG 2890.0031
LEU 2900.0034
ALA 2910.0037
TYR 2920.0043
LEU 2930.0046
ASP 2940.0054
TYR 2950.0054
TYR 2960.0060
LEU 2970.0056
ASP 2980.0062
GLY 2990.0059
ILE 3000.0053
ILE 3010.0054
ASP 3020.0048
LEU 3030.0044
PHE 3040.0042
ASN 3050.0042
CYS 3060.0034
LEU 3070.0037
THR 3080.0045
ASN 3090.0043
VAL 3100.0038
SER 3110.0042
SER 3120.0042
PHE 3130.0043
SER 3140.0043
LEU 3150.0046
VAL 3160.0046
SER 3170.0049
VAL 3180.0050
THR 3190.0056
ILE 3200.0058
GLU 3210.0064
ARG 3220.0062
VAL 3230.0060
LYS 3240.0064
ASP 3250.0059
PHE 3260.0057
SER 3270.0062
TYR 3280.0058
ASN 3290.0058
PHE 3300.0053
GLY 3310.0052
TRP 3320.0050
GLN 3330.0051
HIS 3340.0049
LEU 3350.0051
GLU 3360.0050
LEU 3370.0051
VAL 3380.0051
ASN 3390.0052
CYS 3400.0052
LYS 3410.0053
PHE 3420.0050
GLY 3430.0053
GLN 3440.0054
PHE 3450.0053
PRO 3460.0052
THR 3470.0057
LEU 3480.0056
LYS 3490.0056
LEU 3500.0054
LYS 3510.0055
SER 3520.0057
LEU 3530.0055
LYS 3540.0054
ARG 3550.0052
LEU 3560.0054
THR 3570.0051
PHE 3580.0051
THR 3590.0052
SER 3600.0052
ASN 3610.0051
LYS 3620.0045
GLY 3630.0044
GLY 3640.0040
ASN 3650.0037
ALA 3660.0033
PHE 3670.0040
SER 3680.0039
GLU 3690.0039
VAL 3700.0040
ASP 3710.0040
LEU 3720.0056
PRO 3730.0057
SER 3740.0054
LEU 3750.0052
GLU 3760.0051
PHE 3770.0051
LEU 3780.0048
ASP 3790.0050
LEU 3800.0047
SER 3810.0049
ARG 3820.0045
ASN 3830.0041
GLY 3840.0031
LEU 3850.0021
SER 3860.0012
PHE 3870.0016
LYS 3880.0016
GLY 3890.0024
CYS 3900.0023
CYS 3910.0034
SER 3920.0040
GLN 3930.0040
SER 3940.0037
ASP 3950.0037
PHE 3960.0040
GLY 3970.0053
THR 3980.0053
ILE 3990.0055
SER 4000.0053
LEU 4010.0055
LYS 4020.0057
TYR 4030.0055
LEU 4040.0046
ASP 4050.0047
LEU 4060.0040
SER 4070.0035
PHE 4080.0039
ASN 4090.0025
GLY 4100.0028
VAL 4110.0025
ILE 4120.0012
THR 4130.0018
MET 4140.0027
SER 4150.0037
SER 4160.0043
ASN 4170.0053
PHE 4180.0049
LEU 4190.0052
GLY 4200.0053
LEU 4210.0054
GLU 4220.0066
GLN 4230.0070
LEU 4240.0065
GLU 4250.0072
HIS 4260.0068
LEU 4270.0048
ASP 4280.0044
PHE 4290.0034
GLN 4300.0040
HIS 4310.0037
SER 4320.0023
ASN 4330.0018
LEU 4340.0016
LYS 4350.0015
GLN 4360.0030
MET 4370.0039
SER 4380.0047
GLU 4390.0053
PHE 4400.0059
SER 4410.0062
VAL 4420.0053
PHE 4430.0058
LEU 4440.0067
SER 4450.0069
LEU 4460.0069
ARG 4470.0080
ASN 4480.0083
LEU 4490.0076
ILE 4500.0080
TYR 4510.0074
LEU 4520.0062
ASP 4530.0055
ILE 4540.0043
SER 4550.0045
HIS 4560.0038
THR 4570.0024
HIS 4580.0019
THR 4590.0024
ARG 4600.0028
VAL 4610.0054
ALA 4620.0050
PHE 4630.0056
ASN 4640.0062
GLY 4650.0065
ILE 4660.0060
PHE 4670.0065
ASN 4680.0071
GLY 4690.0076
LEU 4700.0076
SER 4710.0084
SER 4720.0087
LEU 4730.0080
GLU 4740.0082
VAL 4750.0079
LEU 4760.0071
LYS 4770.0057
MET 4780.0052
ALA 4790.0050
GLY 4800.0043
ASN 4810.0041
SER 4820.0045
PHE 4830.0045
GLN 4840.0044
GLU 4850.0043
ASN 4860.0044
PHE 4870.0046
LEU 4880.0052
PRO 4890.0050
ASP 4900.0054
ILE 4910.0060
PHE 4920.0063
THR 4930.0064
GLU 4940.0071
LEU 4950.0073
ARG 4960.0076
ASN 4970.0079
LEU 4980.0075
THR 4990.0080
PHE 5000.0080
LEU 5010.0070
ASP 5020.0060
LEU 5030.0056
SER 5040.0056
GLN 5050.0052
CYS 5060.0051
GLN 5070.0054
LEU 5080.0052
GLU 5090.0048
GLN 5100.0046
LEU 5110.0048
SER 5120.0042
PRO 5130.0041
THR 5140.0043
ALA 5150.0051
PHE 5160.0057
ASN 5170.0049
SER 5180.0055
LEU 5190.0063
SER 5200.0063
SER 5210.0073
LEU 5220.0072
GLN 5230.0081
VAL 5240.0079
LEU 5250.0069
ASN 5260.0070
MET 5270.0061
SER 5280.0064
HIS 5290.0064
ASN 5300.0060
ASN 5310.0058
PHE 5320.0062
PHE 5330.0061
SER 5340.0062
LEU 5350.0066
ASP 5360.0061
THR 5370.0064
PHE 5380.0055
PRO 5390.0055
TYR 5400.0064
LYS 5410.0061
CYS 5420.0052
LEU 5430.0063
ASN 5440.0064
SER 5450.0074
LEU 5460.0078
GLN 5470.0090
VAL 5480.0089
LEU 5490.0081
ASP 5500.0082
TYR 5510.0076
SER 5520.0079
LEU 5530.0075
ASN 5540.0070
HIS 5550.0066
ILE 5560.0068
MET 5570.0069
THR 5580.0067
SER 5590.0067
LYS 5600.0058
LYS 5610.0059
GLN 5620.0066
GLU 5630.0065
LEU 5640.0075
GLN 5650.0079
HIS 5660.0072
PHE 5670.0077
PRO 5680.0077
SER 5690.0085
SER 5700.0088
LEU 5710.0091
ALA 5720.0108
PHE 5730.0104
LEU 5740.0095
ASN 5750.0093
LEU 5760.0086
THR 5770.0083
GLN 5780.0078
ASN 5790.0074
ASP 5800.0069
PHE 5810.0071
ALA 5820.0070
CYS 5830.0077
THR 5840.0071
CYS 5850.0079
GLU 5860.0072
HIS 5870.0074
GLN 5880.0085
SER 5890.0087
PHE 5900.0085
LEU 5910.0090
GLN 5920.0099
TRP 5930.0098
ILE 5940.0099
LYS 5950.0109
ASP 5960.0112
GLN 5970.0106
ARG 5980.0112
GLN 5990.0118
LEU 6000.0109
LEU 6010.0107
VAL 6020.0100
GLU 6030.0088
VAL 6040.0082
GLU 6050.0069
ARG 6060.0063
MET 6070.0086
GLU 6080.0082
CYS 6090.0077
ALA 6100.0071
THR 6110.0065
PRO 6120.0048
SER 6130.0031
ASP 6140.0044
LYS 6150.0074
GLN 6160.0074
GLY 6170.0080
MET 6180.0085
PRO 6190.0092
VAL 6200.0088
LEU 6210.0098
SER 6220.0108
LEU 6230.0097
ASN 6240.0100
ILE 6250.0100
THR 6260.0102
CYS 6270.0098
GLU 10.0161
ALA 20.0124
ALA 30.0142
ALA 40.0109
LYS 50.0026
MET 60.0051
GLN 70.0022
ARG 80.0083
LEU 90.0110
VAL 100.0098
LEU 110.0102
LEU 120.0148
LEU 130.0149
ALA 140.0119
ILE 150.0155
SER 160.0146
LEU 170.0135
LEU 180.0124
LEU 190.0122
TYR 200.0115
GLN 210.0093
ASP 220.0085
LEU 230.0072
PRO 240.0062
VAL 250.0069
ARG 260.0064
SER 270.0057
GLU 280.0056
PHE 290.0047
GLU 300.0044
LEU 310.0050
ASP 320.0049
ARG 330.0038
ILE 340.0040
CYS 350.0044
GLY 360.0048
TYR 370.0059
GLY 380.0044
THR 390.0035
ALA 400.0026
ARG 410.0028
CYS 420.0041
ARG 430.0041
LYS 440.0056
LYS 450.0048
CYS 460.0022
ARG 470.0022
SER 480.0026
GLN 490.0020
GLU 500.0011
TYR 510.0012
ARG 520.0028
ILE 530.0034
GLY 540.0053
ARG 550.0067
CYS 560.0067
PRO 570.0085
ASN 580.0084
THR 590.0084
TYR 600.0067
ALA 610.0045
CYS 620.0036
CYS 630.0023
LEU 640.0013
ARG 650.0005
LYS 660.0022
TRP 670.0023
ASP 680.0021
GLU 690.0017
SER 700.0020
LEU 710.0031
LEU 720.0033
ASN 730.0028
ARG 740.0030
THR 750.0039
LYS 760.0040
PRO 770.0038
GLU 780.0038
ALA 790.0037
ALA 800.0036
ALA 810.0063
LYS 820.0074
LYS 830.0068
GLU 840.0079
MET 850.0078
ASN 860.0073
LEU 870.0064
SER 880.0065
VAL 890.0062
GLY 900.0064
LEU 910.0075
GLY 920.0081
GLY 930.0106
GLY 940.0108
SER 950.0105
ASN 960.0082
LEU 970.0082
SER 980.0082
VAL 990.0082
GLY 1000.0087
LEU 1010.0071
GLY 1020.0066
GLU 1030.0078
ILE 1040.0068
GLY 1050.0090
GLY 1060.0184
GLY 1070.0153
SER 1080.0146
LYS 1090.0082
LEU 1100.0081
LEU 1110.0031
ASP 1120.0028
ILE 1130.0030
ASN 1140.0028
LEU 1150.0038
GLY 1160.0086
ARG 1170.0111
GLY 1180.0090
GLY 1190.0063
GLY 1200.0037
SER 1210.0051
MET 1220.0043
VAL 1230.0043
ASP 1240.0037
LEU 1250.0036
THR 1260.0033
PHE 1270.0038
GLY 1280.0036
GLY 1290.0041
VAL 1300.0062
GLY 1310.0106
GLY 1320.0118
GLY 1330.0108
SER 1340.0097
THR 1350.0076
PHE 1360.0061
THR 1370.0057
PHE 1380.0052
PHE 1390.0053
PRO 1400.0051
LEU 1410.0067
VAL 1420.0071
ILE 1430.0078
GLY 1440.0089
GLY 1450.0093
GLY 1460.0099
SER 1470.0082
ASP 1480.0070
ALA 1490.0062
MET 1500.0058
TYR 1510.0065
LEU 1520.0062
GLY 1530.0065
PHE 1540.0063
ALA 1550.0066
ALA 1560.0100
GLY 1570.0097
GLY 1580.0116
GLY 1590.0109
SER 1600.0112
ALA 1610.0090
GLY 1620.0074
GLY 1630.0047
GLU 1640.0024
ASN 1650.0018
HIS 1660.0018
VAL 1670.0025
ALA 1680.0030
PHE 1690.0041
GLY 1700.0045
PRO 1710.0058
GLY 1720.0063
PRO 1730.0070
GLY 1740.0053
VAL 1750.0039
ASP 1760.0026
LEU 1770.0011
THR 1780.0008
PHE 1790.0027
GLY 1800.0042
GLY 1810.0047
VAL 1820.0040
GLN 1830.0024
PHE 1840.0007
ALA 1850.0021
MET 1860.0031
VAL 1870.0043
ASN 1880.0059
ASN 1890.0060
GLY 1900.0079
PRO 1910.0043
GLY 1920.0049
PRO 1930.0068
GLY 1940.0069
GLU 1950.0020
SER 1960.0046
PHE 1970.0054
THR 1980.0016
ALA 1990.0047
GLN 2000.0024
PRO 2010.0032
ALA 2020.0033
ASP 2030.0036
MET 2040.0030
GLN 2050.0049
ALA 2060.0054
GLY 2070.0045
ILE 2080.0043
LYS 2090.0036
GLY 2100.0033
PRO 2110.0038
GLY 2120.0082
PRO 2130.0042
GLY 2140.0063
GLY 2150.0090
SER 2160.0171
ILE 2170.0158
GLN 2180.0077
VAL 2190.0059
ILE 2200.0244
ASN 2210.0195
GLY 2220.0190
SER 2230.0191
THR 2240.0192
ILE 2250.0195
GLY 2260.0099
THR 2270.0139
GLY 2280.0190
SER 2290.0262
LYS 2300.0253
LYS 2310.0217
THR 2320.0250
ILE 2330.0241
LEU 2340.0270
ILE 2350.0303
TYR 2360.0278
SER 2370.0227
ILE 2380.0215
ILE 2390.0197
GLY 2400.0187
VAL 2410.0169
LYS 2420.0140
LYS 2430.0144
GLY 2440.0142
THR 2450.0131
LEU 2460.0276
ALA 2470.0301
TRP 2480.0314
ALA 2490.0333
ARG 2500.0347
THR 2510.0442
GLY 2520.0440
PHE 2530.0427
SER 2540.0452
PRO 2550.0417
ALA 2560.0509
LYS 2570.0498
LYS 2580.0542
LEU 2590.0709
ASN 2600.0861
ALA 2610.0847
GLY 2620.0599
VAL 2630.0577
VAL 2640.0332
ARG 2650.0481
VAL 2660.0400
PHE 2670.0346
PHE 2680.0250
LEU 2690.0234
ASN 2700.0319
GLN 2710.0134
LYS 2720.0133
LYS 2730.0170
ALA 2740.0109
LYS 2750.0058
ASP 2760.0156
VAL 2770.0143
LEU 2780.0086
ARG 2790.0082
LYS 2800.0126
THR 2810.0153
SER 2820.0140
ARG 2830.0268
PRO 2840.0405
MET 2850.0576
VAL 2860.0877
ASP 2870.0695
LEU 2880.0282
THR 2890.0362
PHE 2900.0190
GLY 2910.0210
GLY 2920.0829

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.