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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 47  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1127
GLU 270.0168
PRO 280.0186
CYS 290.0164
VAL 300.0195
GLU 310.0202
VAL 320.0220
VAL 330.0225
PRO 340.0211
ASN 350.0170
ILE 360.0175
THR 370.0162
TYR 380.0140
GLN 390.0140
CYS 400.0118
MET 410.0121
GLU 420.0135
LEU 430.0142
ASN 440.0136
PHE 450.0109
TYR 460.0111
LYS 470.0081
ILE 480.0049
PRO 490.0070
ASP 500.0059
ASN 510.0092
LEU 520.0090
PRO 530.0098
PHE 540.0090
SER 550.0127
THR 560.0117
LYS 570.0128
ASN 580.0118
LEU 590.0087
ASP 600.0083
LEU 610.0062
SER 620.0069
PHE 630.0078
ASN 640.0080
PRO 650.0086
LEU 660.0068
ARG 670.0073
HIS 680.0074
LEU 690.0064
GLY 700.0079
SER 710.0092
TYR 720.0084
SER 730.0062
PHE 740.0058
PHE 750.0072
SER 760.0059
PHE 770.0071
PRO 780.0101
GLU 790.0114
LEU 800.0092
GLN 810.0105
VAL 820.0084
LEU 830.0062
ASP 840.0050
LEU 850.0035
SER 860.0034
ARG 870.0047
CYS 880.0048
GLU 890.0057
ILE 900.0056
GLN 910.0072
THR 920.0083
ILE 930.0077
GLU 940.0093
ASP 950.0107
GLY 960.0101
ALA 970.0083
TYR 980.0080
GLN 990.0102
SER 1000.0098
LEU 1010.0092
SER 1020.0116
HIS 1030.0109
LEU 1040.0087
SER 1050.0081
THR 1060.0058
LEU 1070.0056
ILE 1080.0044
LEU 1090.0042
THR 1100.0035
GLY 1110.0036
ASN 1120.0047
PRO 1130.0058
ILE 1140.0063
GLN 1150.0077
SER 1160.0083
LEU 1170.0086
ALA 1180.0098
LEU 1190.0098
GLY 1200.0101
ALA 1210.0086
PHE 1220.0081
SER 1230.0098
GLY 1240.0101
LEU 1250.0088
SER 1260.0101
SER 1270.0072
LEU 1280.0060
GLN 1290.0040
LYS 1300.0033
LEU 1310.0038
VAL 1320.0034
ALA 1330.0036
VAL 1340.0032
GLU 1350.0034
THR 1360.0039
ASN 1370.0040
LEU 1380.0039
ALA 1390.0043
SER 1400.0040
LEU 1410.0034
GLU 1420.0050
ASN 1430.0060
PHE 1440.0051
PRO 1450.0052
ILE 1460.0042
GLY 1470.0049
HIS 1480.0053
LEU 1490.0047
LYS 1500.0040
THR 1510.0040
LEU 1520.0013
LYS 1530.0012
GLU 1540.0012
LEU 1550.0013
ASN 1560.0016
VAL 1570.0020
ALA 1580.0019
HIS 1590.0026
ASN 1600.0031
LEU 1610.0037
ILE 1620.0037
GLN 1630.0046
SER 1640.0047
PHE 1650.0039
LYS 1660.0047
LEU 1670.0042
PRO 1680.0045
GLU 1690.0039
TYR 1700.0029
PHE 1710.0016
SER 1720.0024
ASN 1730.0017
LEU 1740.0008
THR 1750.0006
ASN 1760.0016
LEU 1770.0025
GLU 1780.0035
HIS 1790.0024
LEU 1800.0015
ASP 1810.0007
LEU 1820.0011
SER 1830.0009
SER 1840.0014
ASN 1850.0023
LYS 1860.0032
ILE 1870.0032
GLN 1880.0042
SER 1890.0053
ILE 1900.0056
TYR 1910.0072
CYS 1920.0084
THR 1930.0082
ASP 1940.0063
LEU 1950.0060
ARG 1960.0069
VAL 1970.0052
LEU 1980.0054
HIS 1990.0070
GLN 2000.0060
MET 2010.0052
PRO 2020.0070
LEU 2030.0063
LEU 2040.0050
ASN 2050.0056
LEU 2060.0048
SER 2070.0041
LEU 2080.0034
ASP 2090.0029
LEU 2100.0027
SER 2110.0026
LEU 2120.0023
ASN 2130.0020
PRO 2140.0023
MET 2150.0034
ASN 2160.0043
PHE 2170.0056
ILE 2180.0062
GLN 2190.0080
PRO 2200.0095
GLY 2210.0099
ALA 2220.0082
PHE 2230.0079
LYS 2240.0097
GLU 2250.0096
ILE 2260.0078
ARG 2270.0078
LEU 2280.0068
HIS 2290.0069
LYS 2300.0065
LEU 2310.0061
THR 2320.0050
LEU 2330.0051
ARG 2340.0061
ASN 2350.0061
ASN 2360.0048
PHE 2370.0060
ASP 2380.0063
SER 2390.0072
LEU 2400.0081
ASN 2410.0077
VAL 2420.0061
MET 2430.0068
LYS 2440.0080
THR 2450.0073
CYS 2460.0064
ILE 2470.0075
GLN 2480.0084
GLY 2490.0075
LEU 2500.0076
ALA 2510.0093
GLY 2520.0095
LEU 2530.0084
GLU 2540.0086
VAL 2550.0081
HIS 2560.0084
ARG 2570.0077
LEU 2580.0076
VAL 2590.0076
LEU 2600.0077
GLY 2610.0080
GLU 2620.0084
PHE 2630.0094
ARG 2640.0112
ASN 2650.0111
GLU 2660.0096
GLY 2670.0096
ASN 2680.0098
LEU 2690.0096
GLU 2700.0107
LYS 2710.0110
PHE 2720.0104
ASP 2730.0108
LYS 2740.0109
SER 2750.0102
ALA 2760.0095
LEU 2770.0090
GLU 2780.0092
GLY 2790.0085
LEU 2800.0085
CYS 2810.0092
ASN 2820.0098
LEU 2830.0088
THR 2840.0090
ILE 2850.0088
GLU 2860.0091
GLU 2870.0083
PHE 2880.0083
ARG 2890.0084
LEU 2900.0086
ALA 2910.0086
TYR 2920.0100
LEU 2930.0106
ASP 2940.0119
TYR 2950.0122
TYR 2960.0129
LEU 2970.0120
ASP 2980.0128
GLY 2990.0118
ILE 3000.0106
ILE 3010.0110
ASP 3020.0103
LEU 3030.0100
PHE 3040.0092
ASN 3050.0092
CYS 3060.0085
LEU 3070.0080
THR 3080.0074
ASN 3090.0067
VAL 3100.0070
SER 3110.0066
SER 3120.0070
PHE 3130.0074
SER 3140.0077
LEU 3150.0083
VAL 3160.0087
SER 3170.0103
VAL 3180.0104
THR 3190.0115
ILE 3200.0112
GLU 3210.0122
ARG 3220.0112
VAL 3230.0096
LYS 3240.0096
ASP 3250.0092
PHE 3260.0076
SER 3270.0073
TYR 3280.0073
ASN 3290.0064
PHE 3300.0062
GLY 3310.0056
TRP 3320.0059
GLN 3330.0058
HIS 3340.0059
LEU 3350.0061
GLU 3360.0063
LEU 3370.0070
VAL 3380.0080
ASN 3390.0097
CYS 3400.0098
LYS 3410.0112
PHE 3420.0103
GLY 3430.0116
GLN 3440.0100
PHE 3450.0080
PRO 3460.0074
THR 3470.0066
LEU 3480.0057
LYS 3490.0052
LEU 3500.0045
LYS 3510.0040
SER 3520.0032
LEU 3530.0034
LYS 3540.0036
ARG 3550.0040
LEU 3560.0039
THR 3570.0042
PHE 3580.0054
THR 3590.0065
SER 3600.0082
ASN 3610.0084
LYS 3620.0105
GLY 3630.0110
GLY 3640.0103
ASN 3650.0081
ALA 3660.0073
PHE 3670.0053
SER 3680.0055
GLU 3690.0047
VAL 3700.0037
ASP 3710.0036
LEU 3720.0019
PRO 3730.0024
SER 3740.0022
LEU 3750.0022
GLU 3760.0032
PHE 3770.0031
LEU 3780.0025
ASP 3790.0035
LEU 3800.0036
SER 3810.0046
ARG 3820.0070
ASN 3830.0068
GLY 3840.0076
LEU 3850.0063
SER 3860.0065
PHE 3870.0046
LYS 3880.0051
GLY 3890.0043
CYS 3900.0024
CYS 3910.0013
SER 3920.0028
GLN 3930.0038
SER 3940.0045
ASP 3950.0031
PHE 3960.0019
GLY 3970.0032
THR 3980.0030
ILE 3990.0045
SER 4000.0045
LEU 4010.0033
LYS 4020.0049
TYR 4030.0046
LEU 4040.0033
ASP 4050.0043
LEU 4060.0040
SER 4070.0062
PHE 4080.0076
ASN 4090.0070
GLY 4100.0074
VAL 4110.0067
ILE 4120.0050
THR 4130.0049
MET 4140.0032
SER 4150.0040
SER 4160.0033
ASN 4170.0028
PHE 4180.0027
LEU 4190.0046
GLY 4200.0054
LEU 4210.0044
GLU 4220.0059
GLN 4230.0071
LEU 4240.0059
GLU 4250.0078
HIS 4260.0075
LEU 4270.0056
ASP 4280.0068
PHE 4290.0064
GLN 4300.0089
HIS 4310.0102
SER 4320.0075
ASN 4330.0077
LEU 4340.0060
LYS 4350.0061
GLN 4360.0054
MET 4370.0047
SER 4380.0051
GLU 4390.0053
PHE 4400.0039
SER 4410.0029
VAL 4420.0024
PHE 4430.0029
LEU 4440.0036
SER 4450.0049
LEU 4460.0054
ARG 4470.0072
ASN 4480.0087
LEU 4490.0077
ILE 4500.0100
TYR 4510.0099
LEU 4520.0080
ASP 4530.0095
ILE 4540.0088
SER 4550.0113
HIS 4560.0126
THR 4570.0099
HIS 4580.0101
THR 4590.0091
ARG 4600.0090
VAL 4610.0080
ALA 4620.0070
PHE 4630.0053
ASN 4640.0041
GLY 4650.0034
ILE 4660.0041
PHE 4670.0046
ASN 4680.0037
GLY 4690.0049
LEU 4700.0062
SER 4710.0074
SER 4720.0093
LEU 4730.0089
GLU 4740.0112
VAL 4750.0118
LEU 4760.0105
LYS 4770.0121
MET 4780.0118
ALA 4790.0136
GLY 4800.0147
ASN 4810.0133
SER 4820.0137
PHE 4830.0117
GLN 4840.0123
GLU 4850.0139
ASN 4860.0132
PHE 4870.0115
LEU 4880.0098
PRO 4890.0083
ASP 4900.0064
ILE 4910.0067
PHE 4920.0063
THR 4930.0050
GLU 4940.0054
LEU 4950.0070
ARG 4960.0077
ASN 4970.0096
LEU 4980.0098
THR 4990.0122
PHE 5000.0131
LEU 5010.0120
ASP 5020.0139
LEU 5030.0136
SER 5040.0156
GLN 5050.0171
CYS 5060.0156
GLN 5070.0168
LEU 5080.0146
GLU 5090.0147
GLN 5100.0128
LEU 5110.0107
SER 5120.0096
PRO 5130.0079
THR 5140.0070
ALA 5150.0078
PHE 5160.0069
ASN 5170.0058
SER 5180.0061
LEU 5190.0073
SER 5200.0080
SER 5210.0098
LEU 5220.0098
GLN 5230.0122
VAL 5240.0132
LEU 5250.0122
ASN 5260.0147
MET 5270.0144
SER 5280.0166
HIS 5290.0189
ASN 5300.0179
ASN 5310.0182
PHE 5320.0164
PHE 5330.0162
SER 5340.0133
LEU 5350.0106
ASP 5360.0101
THR 5370.0072
PHE 5380.0078
PRO 5390.0081
TYR 5400.0065
LYS 5410.0056
CYS 5420.0059
LEU 5430.0069
ASN 5440.0081
SER 5450.0098
LEU 5460.0096
GLN 5470.0115
VAL 5480.0123
LEU 5490.0111
ASP 5500.0137
TYR 5510.0139
SER 5520.0156
LEU 5530.0180
ASN 5540.0176
HIS 5550.0175
ILE 5560.0144
MET 5570.0149
THR 5580.0139
SER 5590.0123
LYS 5600.0158
LYS 5610.0141
GLN 5620.0133
GLU 5630.0110
LEU 5640.0082
GLN 5650.0080
HIS 5660.0066
PHE 5670.0060
PRO 5680.0068
SER 5690.0089
SER 5700.0096
LEU 5710.0089
ALA 5720.0109
PHE 5730.0111
LEU 5740.0092
ASN 5750.0120
LEU 5760.0115
THR 5770.0128
GLN 5780.0151
ASN 5790.0144
ASP 5800.0159
PHE 5810.0128
ALA 5820.0171
CYS 5830.0140
THR 5840.0193
CYS 5850.0215
GLU 5860.0241
HIS 5870.0178
GLN 5880.0158
SER 5890.0151
PHE 5900.0108
LEU 5910.0091
GLN 5920.0107
TRP 5930.0087
ILE 5940.0055
LYS 5950.0073
ASP 5960.0096
GLN 5970.0074
ARG 5980.0080
GLN 5990.0109
LEU 6000.0087
LEU 6010.0088
VAL 6020.0113
GLU 6030.0118
VAL 6040.0113
GLU 6050.0121
ARG 6060.0119
MET 6070.0101
GLU 6080.0110
CYS 6090.0118
ALA 6100.0171
THR 6110.0201
PRO 6120.0199
SER 6130.0209
ASP 6140.0172
LYS 6150.0138
GLN 6160.0158
GLY 6170.0131
MET 6180.0083
PRO 6190.0068
VAL 6200.0058
LEU 6210.0052
SER 6220.0058
LEU 6230.0077
ASN 6240.0129
ILE 6250.0164
THR 6260.0219
CYS 6270.0292
GLU 10.0098
ALA 20.0092
ALA 30.0053
ALA 40.0044
LYS 50.0071
MET 60.0035
GLN 70.0048
ARG 80.0075
LEU 90.0066
VAL 100.0066
LEU 110.0085
LEU 120.0081
LEU 130.0073
ALA 140.0082
ILE 150.0089
SER 160.0064
LEU 170.0065
LEU 180.0060
LEU 190.0048
TYR 200.0046
GLN 210.0037
ASP 220.0032
LEU 230.0033
PRO 240.0032
VAL 250.0035
ARG 260.0141
SER 270.0117
GLU 280.0170
PHE 290.0177
GLU 300.0119
LEU 310.0117
ASP 320.0150
ARG 330.0132
ILE 340.0107
CYS 350.0133
GLY 360.0103
TYR 370.0085
GLY 380.0092
THR 390.0116
ALA 400.0128
ARG 410.0139
CYS 420.0204
ARG 430.0218
LYS 440.0276
LYS 450.0243
CYS 460.0152
ARG 470.0106
SER 480.0079
GLN 490.0061
GLU 500.0102
TYR 510.0150
ARG 520.0215
ILE 530.0247
GLY 540.0300
ARG 550.0329
CYS 560.0290
PRO 570.0330
ASN 580.0350
THR 590.0383
TYR 600.0326
ALA 610.0256
CYS 620.0213
CYS 630.0170
LEU 640.0135
ARG 650.0090
LYS 660.0052
TRP 670.0045
ASP 680.0035
GLU 690.0049
SER 700.0041
LEU 710.0030
LEU 720.0040
ASN 730.0042
ARG 740.0040
THR 750.0049
LYS 760.0049
PRO 770.0042
GLU 780.0033
ALA 790.0027
ALA 800.0035
ALA 810.0057
LYS 820.0057
LYS 830.0050
GLU 840.0053
MET 850.0047
ASN 860.0044
LEU 870.0036
SER 880.0032
VAL 890.0027
GLY 900.0023
LEU 910.0023
GLY 920.0021
GLY 930.0034
GLY 940.0043
SER 950.0043
ASN 960.0037
LEU 970.0038
SER 980.0043
VAL 990.0045
GLY 1000.0051
LEU 1010.0045
GLY 1020.0050
GLU 1030.0058
ILE 1040.0057
GLY 1050.0066
GLY 1060.0083
GLY 1070.0065
SER 1080.0066
LYS 1090.0040
LEU 1100.0044
LEU 1110.0031
ASP 1120.0032
ILE 1130.0033
ASN 1140.0040
LEU 1150.0045
GLY 1160.0082
ARG 1170.0106
GLY 1180.0084
GLY 1190.0072
GLY 1200.0049
SER 1210.0017
MET 1220.0016
VAL 1230.0014
ASP 1240.0013
LEU 1250.0013
THR 1260.0013
PHE 1270.0018
GLY 1280.0017
GLY 1290.0018
VAL 1300.0027
GLY 1310.0051
GLY 1320.0059
GLY 1330.0057
SER 1340.0051
THR 1350.0044
PHE 1360.0030
THR 1370.0026
PHE 1380.0021
PHE 1390.0018
PRO 1400.0013
LEU 1410.0025
VAL 1420.0027
ILE 1430.0044
GLY 1440.0059
GLY 1450.0073
GLY 1460.0071
SER 1470.0052
ASP 1480.0044
ALA 1490.0031
MET 1500.0029
TYR 1510.0027
LEU 1520.0023
GLY 1530.0026
PHE 1540.0027
ALA 1550.0031
ALA 1560.0052
GLY 1570.0054
GLY 1580.0066
GLY 1590.0063
SER 1600.0063
ALA 1610.0051
GLY 1620.0039
GLY 1630.0026
GLU 1640.0015
ASN 1650.0015
HIS 1660.0010
VAL 1670.0012
ALA 1680.0010
PHE 1690.0012
GLY 1700.0010
PRO 1710.0041
GLY 1720.0037
PRO 1730.0029
GLY 1740.0020
VAL 1750.0014
ASP 1760.0009
LEU 1770.0015
THR 1780.0015
PHE 1790.0022
GLY 1800.0024
GLY 1810.0025
VAL 1820.0025
GLN 1830.0018
PHE 1840.0018
ALA 1850.0013
MET 1860.0013
VAL 1870.0007
ASN 1880.0009
ASN 1890.0016
GLY 1900.0023
PRO 1910.0042
GLY 1920.0030
PRO 1930.0027
GLY 1940.0025
GLU 1950.0016
SER 1960.0027
PHE 1970.0016
THR 1980.0036
ALA 1990.0035
GLN 2000.0031
PRO 2010.0031
ALA 2020.0013
ASP 2030.0011
MET 2040.0031
GLN 2050.0043
ALA 2060.0028
GLY 2070.0119
ILE 2080.0072
LYS 2090.0010
GLY 2100.0137
PRO 2110.0181
GLY 2120.0104
PRO 2130.0101
GLY 2140.0209
GLY 2150.0150
SER 2160.0183
ILE 2170.0083
GLN 2180.0128
VAL 2190.0089
ILE 2200.0188
ASN 2210.0107
GLY 2220.0129
SER 2230.0127
THR 2240.0120
ILE 2250.0166
GLY 2260.0181
THR 2270.0144
GLY 2280.0133
SER 2290.0118
LYS 2300.0121
LYS 2310.0148
THR 2320.0165
ILE 2330.0143
LEU 2340.0160
ILE 2350.0140
TYR 2360.0080
SER 2370.0041
ILE 2380.0049
ILE 2390.0048
GLY 2400.0107
VAL 2410.0102
LYS 2420.0094
LYS 2430.0095
GLY 2440.0097
THR 2450.0094
LEU 2460.0125
ALA 2470.0091
TRP 2480.0121
ALA 2490.0135
ARG 2500.0190
THR 2510.0231
GLY 2520.0235
PHE 2530.0222
SER 2540.0229
PRO 2550.0211
ALA 2560.0230
LYS 2570.0204
LYS 2580.0173
LEU 2590.0204
ASN 2600.0220
ALA 2610.0234
GLY 2620.0179
VAL 2630.0212
VAL 2640.0164
ARG 2650.0225
VAL 2660.0191
PHE 2670.0156
PHE 2680.0108
LEU 2690.0108
ASN 2700.0167
GLN 2710.0145
LYS 2720.0150
LYS 2730.0150
ALA 2740.0155
LYS 2750.0173
ASP 2760.0233
VAL 2770.0157
LEU 2780.0082
ARG 2790.0134
LYS 2800.0209
THR 2810.0311
SER 2820.0307
ARG 2830.0326
PRO 2840.0336
MET 2850.0333
VAL 2860.0694
ASP 2870.0692
LEU 2880.0417
THR 2890.0606
PHE 2900.0440
GLY 2910.0376
GLY 2920.1127

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.