CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 48  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0871
GLU 270.0080
PRO 280.0071
CYS 290.0069
VAL 300.0084
GLU 310.0097
VAL 320.0107
VAL 330.0113
PRO 340.0112
ASN 350.0097
ILE 360.0091
THR 370.0085
TYR 380.0071
GLN 390.0064
CYS 400.0046
MET 410.0043
GLU 420.0033
LEU 430.0030
ASN 440.0017
PHE 450.0019
TYR 460.0013
LYS 470.0015
ILE 480.0020
PRO 490.0039
ASP 500.0048
ASN 510.0065
LEU 520.0063
PRO 530.0070
PHE 540.0059
SER 550.0068
THR 560.0065
LYS 570.0063
ASN 580.0061
LEU 590.0048
ASP 600.0045
LEU 610.0030
SER 620.0033
PHE 630.0028
ASN 640.0019
PRO 650.0014
LEU 660.0011
ARG 670.0016
HIS 680.0014
LEU 690.0014
GLY 700.0012
SER 710.0014
TYR 720.0010
SER 730.0012
PHE 740.0021
PHE 750.0023
SER 760.0031
PHE 770.0034
PRO 780.0034
GLU 790.0045
LEU 800.0042
GLN 810.0050
VAL 820.0046
LEU 830.0037
ASP 840.0037
LEU 850.0030
SER 860.0034
ARG 870.0029
CYS 880.0024
GLU 890.0025
ILE 900.0023
GLN 910.0024
THR 920.0021
ILE 930.0021
GLU 940.0018
ASP 950.0018
GLY 960.0019
ALA 970.0017
TYR 980.0022
GLN 990.0020
SER 1000.0023
LEU 1010.0029
SER 1020.0032
HIS 1030.0035
LEU 1040.0033
SER 1050.0037
THR 1060.0036
LEU 1070.0034
ILE 1080.0033
LEU 1090.0032
THR 1100.0032
GLY 1110.0031
ASN 1120.0029
PRO 1130.0030
ILE 1140.0028
GLN 1150.0027
SER 1160.0025
LEU 1170.0025
ALA 1180.0026
LEU 1190.0026
GLY 1200.0026
ALA 1210.0026
PHE 1220.0028
SER 1230.0028
GLY 1240.0029
LEU 1250.0030
SER 1260.0032
SER 1270.0031
LEU 1280.0029
GLN 1290.0025
LYS 1300.0024
LEU 1310.0026
VAL 1320.0027
ALA 1330.0027
VAL 1340.0026
GLU 1350.0027
THR 1360.0027
ASN 1370.0026
LEU 1380.0025
ALA 1390.0025
SER 1400.0025
LEU 1410.0024
GLU 1420.0029
ASN 1430.0031
PHE 1440.0028
PRO 1450.0032
ILE 1460.0028
GLY 1470.0030
HIS 1480.0032
LEU 1490.0029
LYS 1500.0027
THR 1510.0025
LEU 1520.0016
LYS 1530.0011
GLU 1540.0013
LEU 1550.0014
ASN 1560.0015
VAL 1570.0017
ALA 1580.0015
HIS 1590.0016
ASN 1600.0017
LEU 1610.0018
ILE 1620.0017
GLN 1630.0024
SER 1640.0028
PHE 1650.0025
LYS 1660.0030
LEU 1670.0025
PRO 1680.0030
GLU 1690.0035
TYR 1700.0031
PHE 1710.0023
SER 1720.0026
ASN 1730.0027
LEU 1740.0020
THR 1750.0016
ASN 1760.0012
LEU 1770.0001
GLU 1780.0009
HIS 1790.0009
LEU 1800.0003
ASP 1810.0006
LEU 1820.0007
SER 1830.0014
SER 1840.0015
ASN 1850.0010
LYS 1860.0018
ILE 1870.0029
GLN 1880.0041
SER 1890.0045
ILE 1900.0042
TYR 1910.0048
CYS 1920.0050
THR 1930.0049
ASP 1940.0038
LEU 1950.0034
ARG 1960.0039
VAL 1970.0029
LEU 1980.0024
HIS 1990.0032
GLN 2000.0031
MET 2010.0021
PRO 2020.0018
LEU 2030.0005
LEU 2040.0004
ASN 2050.0013
LEU 2060.0015
SER 2070.0019
LEU 2080.0019
ASP 2090.0024
LEU 2100.0026
SER 2110.0034
LEU 2120.0042
ASN 2130.0037
PRO 2140.0047
MET 2150.0048
ASN 2160.0059
PHE 2170.0059
ILE 2180.0053
GLN 2190.0060
PRO 2200.0066
GLY 2210.0059
ALA 2220.0048
PHE 2230.0042
LYS 2240.0047
GLU 2250.0038
ILE 2260.0028
ARG 2270.0025
LEU 2280.0027
HIS 2290.0031
LYS 2300.0037
LEU 2310.0040
THR 2320.0042
LEU 2330.0050
ARG 2340.0062
ASN 2350.0071
ASN 2360.0063
PHE 2370.0076
ASP 2380.0086
SER 2390.0093
LEU 2400.0093
ASN 2410.0093
VAL 2420.0081
MET 2430.0077
LYS 2440.0081
THR 2450.0077
CYS 2460.0065
ILE 2470.0066
GLN 2480.0070
GLY 2490.0060
LEU 2500.0053
ALA 2510.0058
GLY 2520.0048
LEU 2530.0042
GLU 2540.0036
VAL 2550.0041
HIS 2560.0043
ARG 2570.0048
LEU 2580.0053
VAL 2590.0060
LEU 2600.0066
GLY 2610.0075
GLU 2620.0082
PHE 2630.0092
ARG 2640.0109
ASN 2650.0112
GLU 2660.0102
GLY 2670.0104
ASN 2680.0102
LEU 2690.0100
GLU 2700.0111
LYS 2710.0107
PHE 2720.0093
ASP 2730.0091
LYS 2740.0084
SER 2750.0082
ALA 2760.0081
LEU 2770.0072
GLU 2780.0070
GLY 2790.0064
LEU 2800.0059
CYS 2810.0056
ASN 2820.0058
LEU 2830.0050
THR 2840.0044
ILE 2850.0050
GLU 2860.0050
GLU 2870.0055
PHE 2880.0060
ARG 2890.0066
LEU 2900.0071
ALA 2910.0075
TYR 2920.0087
LEU 2930.0090
ASP 2940.0103
TYR 2950.0101
TYR 2960.0102
LEU 2970.0084
ASP 2980.0084
GLY 2990.0075
ILE 3000.0068
ILE 3010.0064
ASP 3020.0067
LEU 3030.0071
PHE 3040.0064
ASN 3050.0057
CYS 3060.0054
LEU 3070.0056
THR 3080.0051
ASN 3090.0045
VAL 3100.0051
SER 3110.0052
SER 3120.0056
PHE 3130.0059
SER 3140.0065
LEU 3150.0069
VAL 3160.0074
SER 3170.0082
VAL 3180.0078
THR 3190.0082
ILE 3200.0074
GLU 3210.0078
ARG 3220.0066
VAL 3230.0059
LYS 3240.0051
ASP 3250.0047
PHE 3260.0043
SER 3270.0039
TYR 3280.0039
ASN 3290.0036
PHE 3300.0042
GLY 3310.0041
TRP 3320.0052
GLN 3330.0052
HIS 3340.0055
LEU 3350.0056
GLU 3360.0059
LEU 3370.0058
VAL 3380.0069
ASN 3390.0078
CYS 3400.0073
LYS 3410.0078
PHE 3420.0065
GLY 3430.0067
GLN 3440.0058
PHE 3450.0051
PRO 3460.0043
THR 3470.0038
LEU 3480.0039
LYS 3490.0032
LEU 3500.0035
LYS 3510.0030
SER 3520.0045
LEU 3530.0046
LYS 3540.0047
ARG 3550.0049
LEU 3560.0047
THR 3570.0051
PHE 3580.0052
THR 3590.0060
SER 3600.0067
ASN 3610.0062
LYS 3620.0069
GLY 3630.0065
GLY 3640.0055
ASN 3650.0046
ALA 3660.0036
PHE 3670.0027
SER 3680.0022
GLU 3690.0015
VAL 3700.0020
ASP 3710.0018
LEU 3720.0031
PRO 3730.0030
SER 3740.0038
LEU 3750.0041
GLU 3760.0047
PHE 3770.0049
LEU 3780.0042
ASP 3790.0046
LEU 3800.0041
SER 3810.0046
ARG 3820.0054
ASN 3830.0052
GLY 3840.0049
LEU 3850.0038
SER 3860.0035
PHE 3870.0026
LYS 3880.0030
GLY 3890.0026
CYS 3900.0012
CYS 3910.0014
SER 3920.0019
GLN 3930.0023
SER 3940.0014
ASP 3950.0009
PHE 3960.0019
GLY 3970.0023
THR 3980.0032
ILE 3990.0039
SER 4000.0046
LEU 4010.0044
LYS 4020.0050
TYR 4030.0047
LEU 4040.0036
ASP 4050.0039
LEU 4060.0033
SER 4070.0036
PHE 4080.0051
ASN 4090.0046
GLY 4100.0051
VAL 4110.0048
ILE 4120.0032
THR 4130.0035
MET 4140.0028
SER 4150.0038
SER 4160.0035
ASN 4170.0033
PHE 4180.0028
LEU 4190.0037
GLY 4200.0042
LEU 4210.0039
GLU 4220.0049
GLN 4230.0057
LEU 4240.0048
GLU 4250.0055
HIS 4260.0051
LEU 4270.0032
ASP 4280.0036
PHE 4290.0033
GLN 4300.0048
HIS 4310.0058
SER 4320.0047
ASN 4330.0051
LEU 4340.0041
LYS 4350.0050
GLN 4360.0053
MET 4370.0043
SER 4380.0051
GLU 4390.0057
PHE 4400.0051
SER 4410.0044
VAL 4420.0031
PHE 4430.0029
LEU 4440.0039
SER 4450.0043
LEU 4460.0040
ARG 4470.0047
ASN 4480.0054
LEU 4490.0045
ILE 4500.0051
TYR 4510.0050
LEU 4520.0036
ASP 4530.0043
ILE 4540.0041
SER 4550.0054
HIS 4560.0065
THR 4570.0059
HIS 4580.0067
THR 4590.0059
ARG 4600.0064
VAL 4610.0058
ALA 4620.0059
PHE 4630.0054
ASN 4640.0050
GLY 4650.0045
ILE 4660.0041
PHE 4670.0033
ASN 4680.0033
GLY 4690.0035
LEU 4700.0034
SER 4710.0038
SER 4720.0041
LEU 4730.0037
GLU 4740.0044
VAL 4750.0050
LEU 4760.0045
LYS 4770.0050
MET 4780.0053
ALA 4790.0062
GLY 4800.0071
ASN 4810.0068
SER 4820.0076
PHE 4830.0073
GLN 4840.0082
GLU 4850.0089
ASN 4860.0079
PHE 4870.0077
LEU 4880.0069
PRO 4890.0064
ASP 4900.0056
ILE 4910.0053
PHE 4920.0042
THR 4930.0036
GLU 4940.0030
LEU 4950.0035
ARG 4960.0031
ASN 4970.0031
LEU 4980.0038
THR 4990.0047
PHE 5000.0056
LEU 5010.0056
ASP 5020.0060
LEU 5030.0065
SER 5040.0070
GLN 5050.0079
CYS 5060.0079
GLN 5070.0089
LEU 5080.0085
GLU 5090.0087
GLN 5100.0084
LEU 5110.0078
SER 5120.0074
PRO 5130.0070
THR 5140.0066
ALA 5150.0067
PHE 5160.0062
ASN 5170.0051
SER 5180.0045
LEU 5190.0047
SER 5200.0042
SER 5210.0042
LEU 5220.0054
GLN 5230.0056
VAL 5240.0063
LEU 5250.0066
ASN 5260.0072
MET 5270.0075
SER 5280.0076
HIS 5290.0085
ASN 5300.0090
ASN 5310.0097
PHE 5320.0095
PHE 5330.0096
SER 5340.0092
LEU 5350.0084
ASP 5360.0089
THR 5370.0077
PHE 5380.0080
PRO 5390.0082
TYR 5400.0076
LYS 5410.0074
CYS 5420.0064
LEU 5430.0064
ASN 5440.0058
SER 5450.0058
LEU 5460.0063
GLN 5470.0065
VAL 5480.0067
LEU 5490.0071
ASP 5500.0073
TYR 5510.0076
SER 5520.0072
LEU 5530.0077
ASN 5540.0086
HIS 5550.0091
ILE 5560.0087
MET 5570.0099
THR 5580.0101
SER 5590.0098
LYS 5600.0110
LYS 5610.0105
GLN 5620.0098
GLU 5630.0089
LEU 5640.0081
GLN 5650.0073
HIS 5660.0074
PHE 5670.0073
PRO 5680.0070
SER 5690.0066
SER 5700.0066
LEU 5710.0067
ALA 5720.0067
PHE 5730.0068
LEU 5740.0070
ASN 5750.0070
LEU 5760.0070
THR 5770.0065
GLN 5780.0067
ASN 5790.0077
ASP 5800.0086
PHE 5810.0087
ALA 5820.0106
CYS 5830.0107
THR 5840.0139
CYS 5850.0157
GLU 5860.0165
HIS 5870.0126
GLN 5880.0119
SER 5890.0112
PHE 5900.0097
LEU 5910.0091
GLN 5920.0092
TRP 5930.0083
ILE 5940.0075
LYS 5950.0076
ASP 5960.0073
GLN 5970.0071
ARG 5980.0069
GLN 5990.0067
LEU 6000.0069
LEU 6010.0068
VAL 6020.0078
GLU 6030.0073
VAL 6040.0072
GLU 6050.0072
ARG 6060.0074
MET 6070.0071
GLU 6080.0072
CYS 6090.0080
ALA 6100.0084
THR 6110.0101
PRO 6120.0110
SER 6130.0112
ASP 6140.0127
LYS 6150.0103
GLN 6160.0083
GLY 6170.0085
MET 6180.0090
PRO 6190.0080
VAL 6200.0078
LEU 6210.0077
SER 6220.0092
LEU 6230.0104
ASN 6240.0130
ILE 6250.0130
THR 6260.0160
CYS 6270.0190
GLU 10.0061
ALA 20.0065
ALA 30.0079
ALA 40.0054
LYS 50.0042
MET 60.0064
GLN 70.0053
ARG 80.0039
LEU 90.0064
VAL 100.0070
LEU 110.0049
LEU 120.0063
LEU 130.0070
ALA 140.0057
ILE 150.0059
SER 160.0055
LEU 170.0048
LEU 180.0048
LEU 190.0051
TYR 200.0047
GLN 210.0041
ASP 220.0041
LEU 230.0044
PRO 240.0046
VAL 250.0049
ARG 260.0098
SER 270.0083
GLU 280.0098
PHE 290.0103
GLU 300.0076
LEU 310.0071
ASP 320.0077
ARG 330.0067
ILE 340.0051
CYS 350.0051
GLY 360.0045
TYR 370.0047
GLY 380.0045
THR 390.0050
ALA 400.0053
ARG 410.0059
CYS 420.0089
ARG 430.0098
LYS 440.0123
LYS 450.0108
CYS 460.0070
ARG 470.0048
SER 480.0041
GLN 490.0032
GLU 500.0047
TYR 510.0071
ARG 520.0094
ILE 530.0102
GLY 540.0122
ARG 550.0135
CYS 560.0118
PRO 570.0135
ASN 580.0151
THR 590.0161
TYR 600.0140
ALA 610.0112
CYS 620.0090
CYS 630.0073
LEU 640.0055
ARG 650.0038
LYS 660.0032
TRP 670.0032
ASP 680.0026
GLU 690.0032
SER 700.0028
LEU 710.0022
LEU 720.0027
ASN 730.0027
ARG 740.0024
THR 750.0027
LYS 760.0023
PRO 770.0018
GLU 780.0024
ALA 790.0021
ALA 800.0015
ALA 810.0084
LYS 820.0095
LYS 830.0080
GLU 840.0108
MET 850.0094
ASN 860.0099
LEU 870.0064
SER 880.0049
VAL 890.0019
GLY 900.0037
LEU 910.0043
GLY 920.0097
GLY 930.0102
GLY 940.0105
SER 950.0056
ASN 960.0056
LEU 970.0052
SER 980.0079
VAL 990.0092
GLY 1000.0122
LEU 1010.0110
GLY 1020.0149
GLU 1030.0174
ILE 1040.0214
GLY 1050.0257
GLY 1060.0281
GLY 1070.0184
SER 1080.0163
LYS 1090.0113
LEU 1100.0154
LEU 1110.0131
ASP 1120.0139
ILE 1130.0123
ASN 1140.0171
LEU 1150.0175
GLY 1160.0306
ARG 1170.0403
GLY 1180.0310
GLY 1190.0314
GLY 1200.0281
SER 1210.0147
MET 1220.0132
VAL 1230.0081
ASP 1240.0066
LEU 1250.0022
THR 1260.0034
PHE 1270.0032
GLY 1280.0046
GLY 1290.0038
VAL 1300.0051
GLY 1310.0054
GLY 1320.0086
GLY 1330.0093
SER 1340.0100
THR 1350.0105
PHE 1360.0072
THR 1370.0074
PHE 1380.0055
PHE 1390.0058
PRO 1400.0046
LEU 1410.0050
VAL 1420.0067
ILE 1430.0167
GLY 1440.0232
GLY 1450.0320
GLY 1460.0241
SER 1470.0152
ASP 1480.0113
ALA 1490.0067
MET 1500.0071
TYR 1510.0093
LEU 1520.0040
GLY 1530.0046
PHE 1540.0064
ALA 1550.0082
ALA 1560.0129
GLY 1570.0147
GLY 1580.0163
GLY 1590.0145
SER 1600.0119
ALA 1610.0105
GLY 1620.0075
GLY 1630.0063
GLU 1640.0050
ASN 1650.0052
HIS 1660.0048
VAL 1670.0053
ALA 1680.0076
PHE 1690.0090
GLY 1700.0117
PRO 1710.0364
GLY 1720.0365
PRO 1730.0334
GLY 1740.0219
VAL 1750.0121
ASP 1760.0092
LEU 1770.0081
THR 1780.0077
PHE 1790.0068
GLY 1800.0069
GLY 1810.0094
VAL 1820.0104
GLN 1830.0106
PHE 1840.0112
ALA 1850.0124
MET 1860.0110
VAL 1870.0166
ASN 1880.0229
ASN 1890.0260
GLY 1900.0330
PRO 1910.0221
GLY 1920.0215
PRO 1930.0212
GLY 1940.0204
GLU 1950.0138
SER 1960.0181
PHE 1970.0193
THR 1980.0161
ALA 1990.0177
GLN 2000.0201
PRO 2010.0096
ALA 2020.0138
ASP 2030.0142
MET 2040.0165
GLN 2050.0172
ALA 2060.0181
GLY 2070.0140
ILE 2080.0113
LYS 2090.0047
GLY 2100.0054
PRO 2110.0071
GLY 2120.0129
PRO 2130.0122
GLY 2140.0100
GLY 2150.0159
SER 2160.0223
ILE 2170.0149
GLN 2180.0049
VAL 2190.0031
ILE 2200.0224
ASN 2210.0148
GLY 2220.0132
SER 2230.0177
THR 2240.0236
ILE 2250.0277
GLY 2260.0245
THR 2270.0264
GLY 2280.0265
SER 2290.0323
LYS 2300.0299
LYS 2310.0307
THR 2320.0289
ILE 2330.0298
LEU 2340.0281
ILE 2350.0299
TYR 2360.0267
SER 2370.0241
ILE 2380.0206
ILE 2390.0176
GLY 2400.0153
VAL 2410.0136
LYS 2420.0105
LYS 2430.0096
GLY 2440.0114
THR 2450.0122
LEU 2460.0177
ALA 2470.0177
TRP 2480.0203
ALA 2490.0212
ARG 2500.0244
THR 2510.0278
GLY 2520.0224
PHE 2530.0240
SER 2540.0251
PRO 2550.0290
ALA 2560.0319
LYS 2570.0393
LYS 2580.0372
LEU 2590.0585
ASN 2600.0696
ALA 2610.0659
GLY 2620.0552
VAL 2630.0500
VAL 2640.0449
ARG 2650.0354
VAL 2660.0362
PHE 2670.0282
PHE 2680.0205
LEU 2690.0133
ASN 2700.0118
GLN 2710.0027
LYS 2720.0055
LYS 2730.0058
ALA 2740.0046
LYS 2750.0081
ASP 2760.0077
VAL 2770.0065
LEU 2780.0060
ARG 2790.0063
LYS 2800.0069
THR 2810.0113
SER 2820.0162
ARG 2830.0168
PRO 2840.0221
MET 2850.0223
VAL 2860.0477
ASP 2870.0557
LEU 2880.0160
THR 2890.0532
PHE 2900.0161
GLY 2910.0378
GLY 2920.0871

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.