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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 50  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0634
GLU 270.0038
PRO 280.0039
CYS 290.0050
VAL 300.0076
GLU 310.0088
VAL 320.0106
VAL 330.0115
PRO 340.0110
ASN 350.0101
ILE 360.0098
THR 370.0084
TYR 380.0065
GLN 390.0063
CYS 400.0042
MET 410.0058
GLU 420.0067
LEU 430.0055
ASN 440.0059
PHE 450.0040
TYR 460.0053
LYS 470.0039
ILE 480.0024
PRO 490.0023
ASP 500.0043
ASN 510.0044
LEU 520.0053
PRO 530.0074
PHE 540.0080
SER 550.0089
THR 560.0072
LYS 570.0069
ASN 580.0060
LEU 590.0041
ASP 600.0041
LEU 610.0027
SER 620.0041
PHE 630.0054
ASN 640.0047
PRO 650.0055
LEU 660.0043
ARG 670.0048
HIS 680.0048
LEU 690.0039
GLY 700.0050
SER 710.0055
TYR 720.0054
SER 730.0040
PHE 740.0038
PHE 750.0055
SER 760.0053
PHE 770.0052
PRO 780.0064
GLU 790.0067
LEU 800.0051
GLN 810.0051
VAL 820.0033
LEU 830.0021
ASP 840.0022
LEU 850.0018
SER 860.0029
ARG 870.0036
CYS 880.0034
GLU 890.0043
ILE 900.0036
GLN 910.0045
THR 920.0045
ILE 930.0037
GLU 940.0047
ASP 950.0052
GLY 960.0048
ALA 970.0039
TYR 980.0034
GLN 990.0047
SER 1000.0050
LEU 1010.0043
SER 1020.0043
HIS 1030.0043
LEU 1040.0030
SER 1050.0031
THR 1060.0025
LEU 1070.0011
ILE 1080.0010
LEU 1090.0011
THR 1100.0015
GLY 1110.0021
ASN 1120.0025
PRO 1130.0032
ILE 1140.0030
GLN 1150.0039
SER 1160.0042
LEU 1170.0029
ALA 1180.0036
LEU 1190.0037
GLY 1200.0042
ALA 1210.0033
PHE 1220.0026
SER 1230.0033
GLY 1240.0035
LEU 1250.0030
SER 1260.0035
SER 1270.0022
LEU 1280.0017
GLN 1290.0018
LYS 1300.0013
LEU 1310.0009
VAL 1320.0006
ALA 1330.0004
VAL 1340.0007
GLU 1350.0007
THR 1360.0006
ASN 1370.0013
LEU 1380.0018
ALA 1390.0029
SER 1400.0036
LEU 1410.0035
GLU 1420.0038
ASN 1430.0029
PHE 1440.0022
PRO 1450.0028
ILE 1460.0027
GLY 1470.0031
HIS 1480.0033
LEU 1490.0026
LYS 1500.0030
THR 1510.0024
LEU 1520.0017
LYS 1530.0011
GLU 1540.0007
LEU 1550.0012
ASN 1560.0014
VAL 1570.0016
ALA 1580.0023
HIS 1590.0028
ASN 1600.0027
LEU 1610.0035
ILE 1620.0051
GLN 1630.0066
SER 1640.0067
PHE 1650.0060
LYS 1660.0063
LEU 1670.0049
PRO 1680.0050
GLU 1690.0057
TYR 1700.0047
PHE 1710.0041
SER 1720.0045
ASN 1730.0042
LEU 1740.0031
THR 1750.0032
ASN 1760.0022
LEU 1770.0013
GLU 1780.0005
HIS 1790.0012
LEU 1800.0020
ASP 1810.0026
LEU 1820.0037
SER 1830.0047
SER 1840.0056
ASN 1850.0055
LYS 1860.0068
ILE 1870.0077
GLN 1880.0095
SER 1890.0095
ILE 1900.0083
TYR 1910.0091
CYS 1920.0088
THR 1930.0089
ASP 1940.0075
LEU 1950.0064
ARG 1960.0072
VAL 1970.0057
LEU 1980.0048
HIS 1990.0059
GLN 2000.0062
MET 2010.0048
PRO 2020.0038
LEU 2030.0029
LEU 2040.0020
ASN 2050.0002
LEU 2060.0012
SER 2070.0023
LEU 2080.0032
ASP 2090.0044
LEU 2100.0056
SER 2110.0068
LEU 2120.0082
ASN 2130.0081
PRO 2140.0098
MET 2150.0095
ASN 2160.0111
PHE 2170.0107
ILE 2180.0093
GLN 2190.0099
PRO 2200.0098
GLY 2210.0086
ALA 2220.0077
PHE 2230.0060
LYS 2240.0063
GLU 2250.0048
ILE 2260.0037
ARG 2270.0020
LEU 2280.0022
HIS 2290.0025
LYS 2300.0039
LEU 2310.0048
THR 2320.0059
LEU 2330.0072
ARG 2340.0085
ASN 2350.0099
ASN 2360.0094
PHE 2370.0109
ASP 2380.0124
SER 2390.0128
LEU 2400.0123
ASN 2410.0123
VAL 2420.0119
MET 2430.0108
LYS 2440.0108
THR 2450.0107
CYS 2460.0095
ILE 2470.0089
GLN 2480.0093
GLY 2490.0086
LEU 2500.0070
ALA 2510.0071
GLY 2520.0055
LEU 2530.0046
GLU 2540.0032
VAL 2550.0040
HIS 2560.0043
ARG 2570.0054
LEU 2580.0060
VAL 2590.0071
LEU 2600.0081
GLY 2610.0094
GLU 2620.0101
PHE 2630.0110
ARG 2640.0124
ASN 2650.0129
GLU 2660.0123
GLY 2670.0128
ASN 2680.0125
LEU 2690.0122
GLU 2700.0135
LYS 2710.0128
PHE 2720.0112
ASP 2730.0109
LYS 2740.0100
SER 2750.0095
ALA 2760.0095
LEU 2770.0087
GLU 2780.0083
GLY 2790.0075
LEU 2800.0069
CYS 2810.0063
ASN 2820.0063
LEU 2830.0053
THR 2840.0044
ILE 2850.0055
GLU 2860.0057
GLU 2870.0067
PHE 2880.0072
ARG 2890.0078
LEU 2900.0084
ALA 2910.0087
TYR 2920.0096
LEU 2930.0099
ASP 2940.0113
TYR 2950.0110
TYR 2960.0113
LEU 2970.0092
ASP 2980.0095
GLY 2990.0091
ILE 3000.0086
ILE 3010.0084
ASP 3020.0090
LEU 3030.0091
PHE 3040.0085
ASN 3050.0080
CYS 3060.0072
LEU 3070.0078
THR 3080.0081
ASN 3090.0075
VAL 3100.0075
SER 3110.0078
SER 3120.0080
PHE 3130.0082
SER 3140.0083
LEU 3150.0085
VAL 3160.0084
SER 3170.0086
VAL 3180.0083
THR 3190.0089
ILE 3200.0085
GLU 3210.0091
ARG 3220.0087
VAL 3230.0085
LYS 3240.0087
ASP 3250.0079
PHE 3260.0078
SER 3270.0086
TYR 3280.0086
ASN 3290.0086
PHE 3300.0085
GLY 3310.0085
TRP 3320.0088
GLN 3330.0088
HIS 3340.0086
LEU 3350.0086
GLU 3360.0084
LEU 3370.0073
VAL 3380.0076
ASN 3390.0080
CYS 3400.0077
LYS 3410.0080
PHE 3420.0070
GLY 3430.0071
GLN 3440.0072
PHE 3450.0071
PRO 3460.0068
THR 3470.0071
LEU 3480.0074
LYS 3490.0076
LEU 3500.0080
LYS 3510.0081
SER 3520.0089
LEU 3530.0084
LYS 3540.0083
ARG 3550.0079
LEU 3560.0075
THR 3570.0068
PHE 3580.0067
THR 3590.0066
SER 3600.0066
ASN 3610.0066
LYS 3620.0063
GLY 3630.0059
GLY 3640.0053
ASN 3650.0049
ALA 3660.0043
PHE 3670.0034
SER 3680.0036
GLU 3690.0036
VAL 3700.0046
ASP 3710.0053
LEU 3720.0060
PRO 3730.0063
SER 3740.0070
LEU 3750.0064
GLU 3760.0064
PHE 3770.0057
LEU 3780.0049
ASP 3790.0049
LEU 3800.0046
SER 3810.0047
ARG 3820.0055
ASN 3830.0061
GLY 3840.0063
LEU 3850.0050
SER 3860.0055
PHE 3870.0053
LYS 3880.0065
GLY 3890.0063
CYS 3900.0047
CYS 3910.0040
SER 3920.0030
GLN 3930.0033
SER 3940.0021
ASP 3950.0018
PHE 3960.0029
GLY 3970.0030
THR 3980.0036
ILE 3990.0041
SER 4000.0048
LEU 4010.0040
LYS 4020.0038
TYR 4030.0028
LEU 4040.0016
ASP 4050.0021
LEU 4060.0030
SER 4070.0040
PHE 4080.0060
ASN 4090.0066
GLY 4100.0083
VAL 4110.0088
ILE 4120.0072
THR 4130.0085
MET 4140.0080
SER 4150.0090
SER 4160.0081
ASN 4170.0078
PHE 4180.0053
LEU 4190.0062
GLY 4200.0056
LEU 4210.0044
GLU 4220.0058
GLN 4230.0050
LEU 4240.0031
GLU 4250.0027
HIS 4260.0011
LEU 4270.0031
ASP 4280.0033
PHE 4290.0052
GLN 4300.0058
HIS 4310.0076
SER 4320.0078
ASN 4330.0096
LEU 4340.0093
LYS 4350.0110
GLN 4360.0119
MET 4370.0107
SER 4380.0123
GLU 4390.0131
PHE 4400.0122
SER 4410.0109
VAL 4420.0089
PHE 4430.0077
LEU 4440.0091
SER 4450.0081
LEU 4460.0066
ARG 4470.0069
ASN 4480.0055
LEU 4490.0047
ILE 4500.0043
TYR 4510.0047
LEU 4520.0056
ASP 4530.0058
ILE 4540.0074
SER 4550.0076
HIS 4560.0090
THR 4570.0102
HIS 4580.0112
THR 4590.0112
ARG 4600.0119
VAL 4610.0116
ALA 4620.0125
PHE 4630.0122
ASN 4640.0116
GLY 4650.0112
ILE 4660.0104
PHE 4670.0090
ASN 4680.0093
GLY 4690.0086
LEU 4700.0077
SER 4710.0077
SER 4720.0065
LEU 4730.0066
GLU 4740.0071
VAL 4750.0076
LEU 4760.0076
LYS 4770.0076
MET 4780.0085
ALA 4790.0085
GLY 4800.0095
ASN 4810.0101
SER 4820.0106
PHE 4830.0106
GLN 4840.0116
GLU 4850.0110
ASN 4860.0097
PHE 4870.0090
LEU 4880.0091
PRO 4890.0093
ASP 4900.0095
ILE 4910.0098
PHE 4920.0088
THR 4930.0087
GLU 4940.0085
LEU 4950.0085
ARG 4960.0086
ASN 4970.0091
LEU 4980.0091
THR 4990.0100
PHE 5000.0099
LEU 5010.0094
ASP 5020.0088
LEU 5030.0088
SER 5040.0085
GLN 5050.0089
CYS 5060.0092
GLN 5070.0086
LEU 5080.0082
GLU 5090.0071
GLN 5100.0077
LEU 5110.0089
SER 5120.0090
PRO 5130.0096
THR 5140.0107
ALA 5150.0104
PHE 5160.0109
ASN 5170.0106
SER 5180.0116
LEU 5190.0114
SER 5200.0123
SER 5210.0125
LEU 5220.0126
GLN 5230.0130
VAL 5240.0117
LEU 5250.0104
ASN 5260.0094
MET 5270.0084
SER 5280.0074
HIS 5290.0071
ASN 5300.0069
ASN 5310.0060
PHE 5320.0054
PHE 5330.0051
SER 5340.0071
LEU 5350.0080
ASP 5360.0108
THR 5370.0113
PHE 5380.0136
PRO 5390.0132
TYR 5400.0135
LYS 5410.0159
CYS 5420.0151
LEU 5430.0145
ASN 5440.0161
SER 5450.0157
LEU 5460.0137
GLN 5470.0136
VAL 5480.0116
LEU 5490.0101
ASP 5500.0083
TYR 5510.0063
SER 5520.0050
LEU 5530.0047
ASN 5540.0041
HIS 5550.0027
ILE 5560.0043
MET 5570.0074
THR 5580.0096
SER 5590.0110
LYS 5600.0132
LYS 5610.0146
GLN 5620.0154
GLU 5630.0160
LEU 5640.0128
GLN 5650.0145
HIS 5660.0158
PHE 5670.0136
PRO 5680.0156
SER 5690.0160
SER 5700.0160
LEU 5710.0133
ALA 5720.0117
PHE 5730.0096
LEU 5740.0078
ASN 5750.0060
LEU 5760.0034
THR 5770.0026
GLN 5780.0026
ASN 5790.0010
ASP 5800.0036
PHE 5810.0060
ALA 5820.0122
CYS 5830.0139
THR 5840.0188
CYS 5850.0212
GLU 5860.0222
HIS 5870.0166
GLN 5880.0159
SER 5890.0159
PHE 5900.0120
LEU 5910.0097
GLN 5920.0106
TRP 5930.0099
ILE 5940.0057
LYS 5950.0048
ASP 5960.0068
GLN 5970.0065
ARG 5980.0030
GLN 5990.0060
LEU 6000.0075
LEU 6010.0044
VAL 6020.0057
GLU 6030.0054
VAL 6040.0052
GLU 6050.0066
ARG 6060.0040
MET 6070.0039
GLU 6080.0074
CYS 6090.0099
ALA 6100.0107
THR 6110.0141
PRO 6120.0193
SER 6130.0214
ASP 6140.0232
LYS 6150.0186
GLN 6160.0161
GLY 6170.0144
MET 6180.0142
PRO 6190.0099
VAL 6200.0077
LEU 6210.0063
SER 6220.0120
LEU 6230.0141
ASN 6240.0177
ILE 6250.0175
THR 6260.0226
CYS 6270.0350
GLU 10.0146
ALA 20.0083
ALA 30.0085
ALA 40.0060
LYS 50.0049
MET 60.0042
GLN 70.0040
ARG 80.0062
LEU 90.0095
VAL 100.0109
LEU 110.0100
LEU 120.0108
LEU 130.0115
ALA 140.0104
ILE 150.0100
SER 160.0071
LEU 170.0064
LEU 180.0069
LEU 190.0046
TYR 200.0049
GLN 210.0070
ASP 220.0061
LEU 230.0069
PRO 240.0100
VAL 250.0110
ARG 260.0112
SER 270.0103
GLU 280.0098
PHE 290.0091
GLU 300.0089
LEU 310.0097
ASP 320.0093
ARG 330.0084
ILE 340.0093
CYS 350.0100
GLY 360.0092
TYR 370.0095
GLY 380.0093
THR 390.0089
ALA 400.0088
ARG 410.0076
CYS 420.0089
ARG 430.0079
LYS 440.0094
LYS 450.0083
CYS 460.0059
ARG 470.0040
SER 480.0035
GLN 490.0019
GLU 500.0038
TYR 510.0060
ARG 520.0091
ILE 530.0109
GLY 540.0136
ARG 550.0149
CYS 560.0137
PRO 570.0155
ASN 580.0141
THR 590.0151
TYR 600.0122
ALA 610.0103
CYS 620.0096
CYS 630.0073
LEU 640.0067
ARG 650.0045
LYS 660.0022
TRP 670.0025
ASP 680.0020
GLU 690.0018
SER 700.0018
LEU 710.0033
LEU 720.0034
ASN 730.0023
ARG 740.0020
THR 750.0029
LYS 760.0042
PRO 770.0049
GLU 780.0050
ALA 790.0067
ALA 800.0071
ALA 810.0119
LYS 820.0104
LYS 830.0090
GLU 840.0090
MET 850.0073
ASN 860.0056
LEU 870.0048
SER 880.0029
VAL 890.0048
GLY 900.0057
LEU 910.0102
GLY 920.0145
GLY 930.0205
GLY 940.0185
SER 950.0155
ASN 960.0076
LEU 970.0080
SER 980.0058
VAL 990.0082
GLY 1000.0088
LEU 1010.0100
GLY 1020.0105
GLU 1030.0119
ILE 1040.0171
GLY 1050.0223
GLY 1060.0315
GLY 1070.0221
SER 1080.0174
LYS 1090.0109
LEU 1100.0121
LEU 1110.0114
ASP 1120.0124
ILE 1130.0093
ASN 1140.0132
LEU 1150.0112
GLY 1160.0146
ARG 1170.0146
GLY 1180.0150
GLY 1190.0130
GLY 1200.0112
SER 1210.0079
MET 1220.0055
VAL 1230.0040
ASP 1240.0017
LEU 1250.0019
THR 1260.0022
PHE 1270.0029
GLY 1280.0043
GLY 1290.0049
VAL 1300.0058
GLY 1310.0093
GLY 1320.0044
GLY 1330.0042
SER 1340.0016
THR 1350.0052
PHE 1360.0033
THR 1370.0063
PHE 1380.0027
PHE 1390.0052
PRO 1400.0020
LEU 1410.0078
VAL 1420.0118
ILE 1430.0177
GLY 1440.0209
GLY 1450.0319
GLY 1460.0287
SER 1470.0230
ASP 1480.0146
ALA 1490.0153
MET 1500.0103
TYR 1510.0091
LEU 1520.0053
GLY 1530.0035
PHE 1540.0047
ALA 1550.0073
ALA 1560.0090
GLY 1570.0105
GLY 1580.0093
GLY 1590.0102
SER 1600.0105
ALA 1610.0102
GLY 1620.0095
GLY 1630.0080
GLU 1640.0055
ASN 1650.0032
HIS 1660.0014
VAL 1670.0006
ALA 1680.0007
PHE 1690.0016
GLY 1700.0028
PRO 1710.0103
GLY 1720.0094
PRO 1730.0070
GLY 1740.0050
VAL 1750.0025
ASP 1760.0019
LEU 1770.0025
THR 1780.0024
PHE 1790.0040
GLY 1800.0043
GLY 1810.0015
VAL 1820.0026
GLN 1830.0031
PHE 1840.0053
ALA 1850.0068
MET 1860.0092
VAL 1870.0157
ASN 1880.0134
ASN 1890.0234
GLY 1900.0216
PRO 1910.0184
GLY 1920.0129
PRO 1930.0104
GLY 1940.0156
GLU 1950.0064
SER 1960.0047
PHE 1970.0068
THR 1980.0036
ALA 1990.0088
GLN 2000.0062
PRO 2010.0069
ALA 2020.0082
ASP 2030.0083
MET 2040.0090
GLN 2050.0148
ALA 2060.0226
GLY 2070.0334
ILE 2080.0206
LYS 2090.0188
GLY 2100.0594
PRO 2110.0532
GLY 2120.0446
PRO 2130.0283
GLY 2140.0448
GLY 2150.0447
SER 2160.0480
ILE 2170.0356
GLN 2180.0357
VAL 2190.0558
ILE 2200.0579
ASN 2210.0618
GLY 2220.0502
SER 2230.0446
THR 2240.0394
ILE 2250.0337
GLY 2260.0309
THR 2270.0319
GLY 2280.0362
SER 2290.0440
LYS 2300.0378
LYS 2310.0342
THR 2320.0302
ILE 2330.0285
LEU 2340.0236
ILE 2350.0237
TYR 2360.0171
SER 2370.0130
ILE 2380.0122
ILE 2390.0109
GLY 2400.0123
VAL 2410.0145
LYS 2420.0126
LYS 2430.0138
GLY 2440.0155
THR 2450.0151
LEU 2460.0191
ALA 2470.0159
TRP 2480.0184
ALA 2490.0171
ARG 2500.0214
THR 2510.0225
GLY 2520.0249
PHE 2530.0245
SER 2540.0267
PRO 2550.0272
ALA 2560.0176
LYS 2570.0181
LYS 2580.0209
LEU 2590.0299
ASN 2600.0345
ALA 2610.0307
GLY 2620.0272
VAL 2630.0214
VAL 2640.0202
ARG 2650.0151
VAL 2660.0139
PHE 2670.0104
PHE 2680.0088
LEU 2690.0081
ASN 2700.0131
GLN 2710.0103
LYS 2720.0083
LYS 2730.0088
ALA 2740.0087
LYS 2750.0062
ASP 2760.0053
VAL 2770.0096
LEU 2780.0094
ARG 2790.0065
LYS 2800.0090
THR 2810.0216
SER 2820.0202
ARG 2830.0186
PRO 2840.0166
MET 2850.0170
VAL 2860.0378
ASP 2870.0385
LEU 2880.0248
THR 2890.0359
PHE 2900.0275
GLY 2910.0225
GLY 2920.0634

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.