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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 51  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1392
GLU 270.0020
PRO 280.0017
CYS 290.0023
VAL 300.0035
GLU 310.0042
VAL 320.0052
VAL 330.0057
PRO 340.0054
ASN 350.0050
ILE 360.0049
THR 370.0042
TYR 380.0032
GLN 390.0030
CYS 400.0020
MET 410.0028
GLU 420.0031
LEU 430.0025
ASN 440.0027
PHE 450.0019
TYR 460.0025
LYS 470.0019
ILE 480.0012
PRO 490.0014
ASP 500.0023
ASN 510.0024
LEU 520.0028
PRO 530.0037
PHE 540.0039
SER 550.0043
THR 560.0036
LYS 570.0035
ASN 580.0031
LEU 590.0022
ASP 600.0022
LEU 610.0016
SER 620.0021
PHE 630.0026
ASN 640.0023
PRO 650.0026
LEU 660.0021
ARG 670.0022
HIS 680.0021
LEU 690.0016
GLY 700.0021
SER 710.0022
TYR 720.0022
SER 730.0016
PHE 740.0017
PHE 750.0024
SER 760.0025
PHE 770.0024
PRO 780.0029
GLU 790.0032
LEU 800.0025
GLN 810.0027
VAL 820.0020
LEU 830.0015
ASP 840.0016
LEU 850.0014
SER 860.0020
ARG 870.0019
CYS 880.0018
GLU 890.0020
ILE 900.0017
GLN 910.0019
THR 920.0019
ILE 930.0015
GLU 940.0018
ASP 950.0019
GLY 960.0018
ALA 970.0015
TYR 980.0014
GLN 990.0018
SER 1000.0021
LEU 1010.0019
SER 1020.0019
HIS 1030.0021
LEU 1040.0015
SER 1050.0019
THR 1060.0017
LEU 1070.0012
ILE 1080.0013
LEU 1090.0013
THR 1100.0015
GLY 1110.0017
ASN 1120.0016
PRO 1130.0018
ILE 1140.0015
GLN 1150.0018
SER 1160.0018
LEU 1170.0012
ALA 1180.0014
LEU 1190.0014
GLY 1200.0016
ALA 1210.0013
PHE 1220.0011
SER 1230.0013
GLY 1240.0015
LEU 1250.0014
SER 1260.0016
SER 1270.0014
LEU 1280.0012
GLN 1290.0013
LYS 1300.0012
LEU 1310.0011
VAL 1320.0012
ALA 1330.0012
VAL 1340.0012
GLU 1350.0013
THR 1360.0012
ASN 1370.0011
LEU 1380.0011
ALA 1390.0012
SER 1400.0013
LEU 1410.0013
GLU 1420.0014
ASN 1430.0012
PHE 1440.0011
PRO 1450.0013
ILE 1460.0013
GLY 1470.0014
HIS 1480.0015
LEU 1490.0013
LYS 1500.0015
THR 1510.0013
LEU 1520.0010
LYS 1530.0009
GLU 1540.0009
LEU 1550.0009
ASN 1560.0008
VAL 1570.0010
ALA 1580.0010
HIS 1590.0011
ASN 1600.0010
LEU 1610.0011
ILE 1620.0015
GLN 1630.0019
SER 1640.0020
PHE 1650.0019
LYS 1660.0021
LEU 1670.0017
PRO 1680.0018
GLU 1690.0021
TYR 1700.0018
PHE 1710.0017
SER 1720.0018
ASN 1730.0017
LEU 1740.0014
THR 1750.0014
ASN 1760.0011
LEU 1770.0007
GLU 1780.0007
HIS 1790.0007
LEU 1800.0007
ASP 1810.0007
LEU 1820.0010
SER 1830.0011
SER 1840.0013
ASN 1850.0013
LYS 1860.0018
ILE 1870.0022
GLN 1880.0028
SER 1890.0029
ILE 1900.0026
TYR 1910.0030
CYS 1920.0029
THR 1930.0030
ASP 1940.0025
LEU 1950.0022
ARG 1960.0025
VAL 1970.0020
LEU 1980.0018
HIS 1990.0022
GLN 2000.0023
MET 2010.0018
PRO 2020.0014
LEU 2030.0010
LEU 2040.0008
ASN 2050.0003
LEU 2060.0005
SER 2070.0006
LEU 2080.0008
ASP 2090.0011
LEU 2100.0014
SER 2110.0018
LEU 2120.0023
ASN 2130.0022
PRO 2140.0028
MET 2150.0028
ASN 2160.0034
PHE 2170.0034
ILE 2180.0029
GLN 2190.0032
PRO 2200.0033
GLY 2210.0029
ALA 2220.0026
PHE 2230.0020
LYS 2240.0022
GLU 2250.0017
ILE 2260.0013
ARG 2270.0007
LEU 2280.0007
HIS 2290.0009
LYS 2300.0013
LEU 2310.0015
THR 2320.0017
LEU 2330.0022
ARG 2340.0027
ASN 2350.0032
ASN 2360.0030
PHE 2370.0035
ASP 2380.0041
SER 2390.0043
LEU 2400.0042
ASN 2410.0043
VAL 2420.0039
MET 2430.0036
LYS 2440.0037
THR 2450.0036
CYS 2460.0031
ILE 2470.0030
GLN 2480.0032
GLY 2490.0028
LEU 2500.0023
ALA 2510.0024
GLY 2520.0019
LEU 2530.0016
GLU 2540.0011
VAL 2550.0014
HIS 2560.0016
ARG 2570.0019
LEU 2580.0020
VAL 2590.0024
LEU 2600.0027
GLY 2610.0032
GLU 2620.0034
PHE 2630.0038
ARG 2640.0045
ASN 2650.0046
GLU 2660.0043
GLY 2670.0045
ASN 2680.0044
LEU 2690.0043
GLU 2700.0048
LYS 2710.0046
PHE 2720.0039
ASP 2730.0039
LYS 2740.0035
SER 2750.0033
ALA 2760.0033
LEU 2770.0030
GLU 2780.0028
GLY 2790.0026
LEU 2800.0023
CYS 2810.0021
ASN 2820.0022
LEU 2830.0018
THR 2840.0015
ILE 2850.0020
GLU 2860.0021
GLU 2870.0024
PHE 2880.0026
ARG 2890.0028
LEU 2900.0030
ALA 2910.0031
TYR 2920.0035
LEU 2930.0036
ASP 2940.0042
TYR 2950.0041
TYR 2960.0042
LEU 2970.0034
ASP 2980.0035
GLY 2990.0032
ILE 3000.0030
ILE 3010.0028
ASP 3020.0030
LEU 3030.0031
PHE 3040.0029
ASN 3050.0026
CYS 3060.0024
LEU 3070.0027
THR 3080.0028
ASN 3090.0026
VAL 3100.0027
SER 3110.0028
SER 3120.0029
PHE 3130.0029
SER 3140.0030
LEU 3150.0031
VAL 3160.0032
SER 3170.0034
VAL 3180.0032
THR 3190.0034
ILE 3200.0032
GLU 3210.0034
ARG 3220.0031
VAL 3230.0030
LYS 3240.0029
ASP 3250.0026
PHE 3260.0026
SER 3270.0027
TYR 3280.0026
ASN 3290.0026
PHE 3300.0027
GLY 3310.0027
TRP 3320.0030
GLN 3330.0030
HIS 3340.0030
LEU 3350.0030
GLU 3360.0029
LEU 3370.0028
VAL 3380.0031
ASN 3390.0034
CYS 3400.0032
LYS 3410.0033
PHE 3420.0029
GLY 3430.0030
GLN 3440.0029
PHE 3450.0028
PRO 3460.0025
THR 3470.0025
LEU 3480.0025
LYS 3490.0024
LEU 3500.0025
LYS 3510.0024
SER 3520.0029
LEU 3530.0027
LYS 3540.0027
ARG 3550.0026
LEU 3560.0025
THR 3570.0026
PHE 3580.0027
THR 3590.0029
SER 3600.0031
ASN 3610.0030
LYS 3620.0031
GLY 3630.0029
GLY 3640.0027
ASN 3650.0025
ALA 3660.0022
PHE 3670.0019
SER 3680.0017
GLU 3690.0015
VAL 3700.0017
ASP 3710.0016
LEU 3720.0019
PRO 3730.0018
SER 3740.0022
LEU 3750.0021
GLU 3760.0022
PHE 3770.0022
LEU 3780.0020
ASP 3790.0022
LEU 3800.0022
SER 3810.0024
ARG 3820.0028
ASN 3830.0029
GLY 3840.0029
LEU 3850.0025
SER 3860.0025
PHE 3870.0023
LYS 3880.0024
GLY 3890.0021
CYS 3900.0016
CYS 3910.0010
SER 3920.0005
GLN 3930.0005
SER 3940.0005
ASP 3950.0010
PHE 3960.0012
GLY 3970.0009
THR 3980.0012
ILE 3990.0012
SER 4000.0016
LEU 4010.0014
LYS 4020.0013
TYR 4030.0014
LEU 4040.0013
ASP 4050.0018
LEU 4060.0019
SER 4070.0023
PHE 4080.0030
ASN 4090.0030
GLY 4100.0033
VAL 4110.0032
ILE 4120.0027
THR 4130.0029
MET 4140.0024
SER 4150.0025
SER 4160.0020
ASN 4170.0017
PHE 4180.0008
LEU 4190.0010
GLY 4200.0008
LEU 4210.0005
GLU 4220.0008
GLN 4230.0010
LEU 4240.0006
GLU 4250.0010
HIS 4260.0014
LEU 4270.0012
ASP 4280.0019
PHE 4290.0023
GLN 4300.0028
HIS 4310.0035
SER 4320.0032
ASN 4330.0035
LEU 4340.0032
LYS 4350.0035
GLN 4360.0035
MET 4370.0034
SER 4380.0038
GLU 4390.0040
PHE 4400.0035
SER 4410.0028
VAL 4420.0024
PHE 4430.0017
LEU 4440.0019
SER 4450.0014
LEU 4460.0009
ARG 4470.0009
ASN 4480.0005
LEU 4490.0006
ILE 4500.0010
TYR 4510.0017
LEU 4520.0019
ASP 4530.0024
ILE 4540.0029
SER 4550.0033
HIS 4560.0039
THR 4570.0041
HIS 4580.0045
THR 4590.0042
ARG 4600.0044
VAL 4610.0040
ALA 4620.0045
PHE 4630.0041
ASN 4640.0037
GLY 4650.0034
ILE 4660.0031
PHE 4670.0027
ASN 4680.0026
GLY 4690.0020
LEU 4700.0017
SER 4710.0015
SER 4720.0011
LEU 4730.0015
GLU 4740.0018
VAL 4750.0024
LEU 4760.0027
LYS 4770.0031
MET 4780.0035
ALA 4790.0038
GLY 4800.0044
ASN 4810.0044
SER 4820.0050
PHE 4830.0049
GLN 4840.0056
GLU 4850.0058
ASN 4860.0051
PHE 4870.0048
LEU 4880.0043
PRO 4890.0044
ASP 4900.0040
ILE 4910.0040
PHE 4920.0032
THR 4930.0030
GLU 4940.0027
LEU 4950.0025
ARG 4960.0021
ASN 4970.0020
LEU 4980.0024
THR 4990.0025
PHE 5000.0029
LEU 5010.0032
ASP 5020.0037
LEU 5030.0039
SER 5040.0041
GLN 5050.0045
CYS 5060.0045
GLN 5070.0050
LEU 5080.0046
GLU 5090.0045
GLN 5100.0044
LEU 5110.0043
SER 5120.0045
PRO 5130.0041
THR 5140.0043
ALA 5150.0042
PHE 5160.0036
ASN 5170.0034
SER 5180.0035
LEU 5190.0031
SER 5200.0028
SER 5210.0026
LEU 5220.0030
GLN 5230.0029
VAL 5240.0031
LEU 5250.0034
ASN 5260.0038
MET 5270.0038
SER 5280.0039
HIS 5290.0043
ASN 5300.0044
ASN 5310.0043
PHE 5320.0039
PHE 5330.0034
SER 5340.0033
LEU 5350.0032
ASP 5360.0040
THR 5370.0033
PHE 5380.0043
PRO 5390.0045
TYR 5400.0038
LYS 5410.0041
CYS 5420.0038
LEU 5430.0034
ASN 5440.0032
SER 5450.0029
LEU 5460.0028
GLN 5470.0026
VAL 5480.0028
LEU 5490.0030
ASP 5500.0032
TYR 5510.0032
SER 5520.0032
LEU 5530.0036
ASN 5540.0035
HIS 5550.0031
ILE 5560.0026
MET 5570.0027
THR 5580.0034
SER 5590.0040
LYS 5600.0050
LYS 5610.0055
GLN 5620.0056
GLU 5630.0054
LEU 5640.0041
GLN 5650.0042
HIS 5660.0042
PHE 5670.0032
PRO 5680.0031
SER 5690.0026
SER 5700.0024
LEU 5710.0021
ALA 5720.0018
PHE 5730.0020
LEU 5740.0020
ASN 5750.0024
LEU 5760.0021
THR 5770.0025
GLN 5780.0028
ASN 5790.0021
ASP 5800.0018
PHE 5810.0019
ALA 5820.0032
CYS 5830.0042
THR 5840.0059
CYS 5850.0078
GLU 5860.0079
HIS 5870.0060
GLN 5880.0064
SER 5890.0065
PHE 5900.0047
LEU 5910.0044
GLN 5920.0055
TRP 5930.0045
ILE 5940.0031
LYS 5950.0043
ASP 5960.0044
GLN 5970.0028
ARG 5980.0027
GLN 5990.0022
LEU 6000.0013
LEU 6010.0015
VAL 6020.0022
GLU 6030.0028
VAL 6040.0025
GLU 6050.0035
ARG 6060.0029
MET 6070.0024
GLU 6080.0027
CYS 6090.0025
ALA 6100.0017
THR 6110.0023
PRO 6120.0038
SER 6130.0033
ASP 6140.0052
LYS 6150.0049
GLN 6160.0033
GLY 6170.0042
MET 6180.0050
PRO 6190.0044
VAL 6200.0036
LEU 6210.0045
SER 6220.0067
LEU 6230.0067
ASN 6240.0085
ILE 6250.0085
THR 6260.0106
CYS 6270.0132
GLU 10.0048
ALA 20.0037
ALA 30.0047
ALA 40.0045
LYS 50.0027
MET 60.0032
GLN 70.0042
ARG 80.0036
LEU 90.0033
VAL 100.0043
LEU 110.0040
LEU 120.0039
LEU 130.0039
ALA 140.0041
ILE 150.0042
SER 160.0038
LEU 170.0026
LEU 180.0019
LEU 190.0028
TYR 200.0031
GLN 210.0019
ASP 220.0016
LEU 230.0024
PRO 240.0029
VAL 250.0033
ARG 260.0051
SER 270.0043
GLU 280.0049
PHE 290.0051
GLU 300.0039
LEU 310.0035
ASP 320.0037
ARG 330.0032
ILE 340.0024
CYS 350.0022
GLY 360.0020
TYR 370.0021
GLY 380.0020
THR 390.0016
ALA 400.0020
ARG 410.0024
CYS 420.0037
ARG 430.0041
LYS 440.0052
LYS 450.0046
CYS 460.0029
ARG 470.0020
SER 480.0020
GLN 490.0015
GLU 500.0020
TYR 510.0031
ARG 520.0040
ILE 530.0041
GLY 540.0049
ARG 550.0055
CYS 560.0049
PRO 570.0056
ASN 580.0064
THR 590.0067
TYR 600.0058
ALA 610.0047
CYS 620.0038
CYS 630.0031
LEU 640.0022
ARG 650.0016
LYS 660.0014
TRP 670.0014
ASP 680.0012
GLU 690.0013
SER 700.0011
LEU 710.0009
LEU 720.0011
ASN 730.0010
ARG 740.0009
THR 750.0009
LYS 760.0013
PRO 770.0015
GLU 780.0023
ALA 790.0039
ALA 800.0040
ALA 810.0164
LYS 820.0159
LYS 830.0156
GLU 840.0149
MET 850.0147
ASN 860.0107
LEU 870.0080
SER 880.0058
VAL 890.0034
GLY 900.0036
LEU 910.0037
GLY 920.0063
GLY 930.0084
GLY 940.0077
SER 950.0054
ASN 960.0053
LEU 970.0042
SER 980.0069
VAL 990.0084
GLY 1000.0115
LEU 1010.0120
GLY 1020.0145
GLU 1030.0161
ILE 1040.0175
GLY 1050.0194
GLY 1060.0178
GLY 1070.0165
SER 1080.0140
LYS 1090.0116
LEU 1100.0110
LEU 1110.0111
ASP 1120.0094
ILE 1130.0065
ASN 1140.0063
LEU 1150.0071
GLY 1160.0099
ARG 1170.0177
GLY 1180.0159
GLY 1190.0150
GLY 1200.0092
SER 1210.0055
MET 1220.0050
VAL 1230.0048
ASP 1240.0042
LEU 1250.0044
THR 1260.0035
PHE 1270.0067
GLY 1280.0095
GLY 1290.0107
VAL 1300.0156
GLY 1310.0177
GLY 1320.0216
GLY 1330.0204
SER 1340.0208
THR 1350.0197
PHE 1360.0135
THR 1370.0152
PHE 1380.0123
PHE 1390.0142
PRO 1400.0128
LEU 1410.0142
VAL 1420.0160
ILE 1430.0160
GLY 1440.0192
GLY 1450.0196
GLY 1460.0197
SER 1470.0162
ASP 1480.0128
ALA 1490.0117
MET 1500.0108
TYR 1510.0101
LEU 1520.0096
GLY 1530.0137
PHE 1540.0145
ALA 1550.0189
ALA 1560.0239
GLY 1570.0291
GLY 1580.0340
GLY 1590.0310
SER 1600.0261
ALA 1610.0130
GLY 1620.0076
GLY 1630.0054
GLU 1640.0041
ASN 1650.0068
HIS 1660.0059
VAL 1670.0056
ALA 1680.0054
PHE 1690.0053
GLY 1700.0052
PRO 1710.0163
GLY 1720.0176
PRO 1730.0180
GLY 1740.0087
VAL 1750.0063
ASP 1760.0062
LEU 1770.0073
THR 1780.0080
PHE 1790.0091
GLY 1800.0099
GLY 1810.0126
VAL 1820.0075
GLN 1830.0043
PHE 1840.0038
ALA 1850.0061
MET 1860.0337
VAL 1870.0723
ASN 1880.0852
ASN 1890.1317
GLY 1900.1392
PRO 1910.0990
GLY 1920.1073
PRO 1930.0911
GLY 1940.0776
GLU 1950.0231
SER 1960.0352
PHE 1970.0443
THR 1980.0236
ALA 1990.0284
GLN 2000.0254
PRO 2010.0046
ALA 2020.0322
ASP 2030.0369
MET 2040.0179
GLN 2050.0114
ALA 2060.0063
GLY 2070.0127
ILE 2080.0149
LYS 2090.0188
GLY 2100.0265
PRO 2110.0200
GLY 2120.0172
PRO 2130.0173
GLY 2140.0162
GLY 2150.0176
SER 2160.0207
ILE 2170.0183
GLN 2180.0217
VAL 2190.0325
ILE 2200.0337
ASN 2210.0314
GLY 2220.0253
SER 2230.0162
THR 2240.0105
ILE 2250.0057
GLY 2260.0158
THR 2270.0188
GLY 2280.0156
SER 2290.0121
LYS 2300.0045
LYS 2310.0048
THR 2320.0038
ILE 2330.0068
LEU 2340.0071
ILE 2350.0108
TYR 2360.0077
SER 2370.0074
ILE 2380.0052
ILE 2390.0048
GLY 2400.0039
VAL 2410.0037
LYS 2420.0039
LYS 2430.0039
GLY 2440.0038
THR 2450.0037
LEU 2460.0021
ALA 2470.0029
TRP 2480.0024
ALA 2490.0042
ARG 2500.0044
THR 2510.0077
GLY 2520.0069
PHE 2530.0079
SER 2540.0104
PRO 2550.0103
ALA 2560.0152
LYS 2570.0152
LYS 2580.0132
LEU 2590.0151
ASN 2600.0161
ALA 2610.0198
GLY 2620.0152
VAL 2630.0129
VAL 2640.0080
ARG 2650.0075
VAL 2660.0119
PHE 2670.0075
PHE 2680.0088
LEU 2690.0044
ASN 2700.0025
GLN 2710.0019
LYS 2720.0033
LYS 2730.0041
ALA 2740.0031
LYS 2750.0037
ASP 2760.0040
VAL 2770.0037
LEU 2780.0033
ARG 2790.0038
LYS 2800.0042
THR 2810.0042
SER 2820.0076
ARG 2830.0062
PRO 2840.0091
MET 2850.0088
VAL 2860.0237
ASP 2870.0334
LEU 2880.0136
THR 2890.0403
PHE 2900.0202
GLY 2910.0227
GLY 2920.0666

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.