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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 52  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1518
GLU 270.0088
PRO 280.0086
CYS 290.0082
VAL 300.0100
GLU 310.0105
VAL 320.0111
VAL 330.0108
PRO 340.0108
ASN 350.0089
ILE 360.0077
THR 370.0077
TYR 380.0071
GLN 390.0073
CYS 400.0058
MET 410.0065
GLU 420.0067
LEU 430.0059
ASN 440.0048
PHE 450.0033
TYR 460.0019
LYS 470.0009
ILE 480.0015
PRO 490.0039
ASP 500.0050
ASN 510.0071
LEU 520.0066
PRO 530.0068
PHE 540.0055
SER 550.0055
THR 560.0050
LYS 570.0039
ASN 580.0045
LEU 590.0039
ASP 600.0047
LEU 610.0038
SER 620.0046
PHE 630.0052
ASN 640.0042
PRO 650.0039
LEU 660.0028
ARG 670.0035
HIS 680.0029
LEU 690.0022
GLY 700.0020
SER 710.0019
TYR 720.0018
SER 730.0005
PHE 740.0005
PHE 750.0018
SER 760.0025
PHE 770.0022
PRO 780.0021
GLU 790.0018
LEU 800.0016
GLN 810.0023
VAL 820.0031
LEU 830.0029
ASP 840.0035
LEU 850.0034
SER 860.0042
ARG 870.0040
CYS 880.0037
GLU 890.0041
ILE 900.0036
GLN 910.0040
THR 920.0037
ILE 930.0032
GLU 940.0030
ASP 950.0031
GLY 960.0024
ALA 970.0020
TYR 980.0017
GLN 990.0021
SER 1000.0013
LEU 1010.0009
SER 1020.0020
HIS 1030.0015
LEU 1040.0021
SER 1050.0027
THR 1060.0034
LEU 1070.0033
ILE 1080.0034
LEU 1090.0034
THR 1100.0035
GLY 1110.0035
ASN 1120.0039
PRO 1130.0043
ILE 1140.0041
GLN 1150.0044
SER 1160.0041
LEU 1170.0038
ALA 1180.0037
LEU 1190.0035
GLY 1200.0032
ALA 1210.0032
PHE 1220.0032
SER 1230.0031
GLY 1240.0026
LEU 1250.0028
SER 1260.0029
SER 1270.0035
LEU 1280.0035
GLN 1290.0036
LYS 1300.0036
LEU 1310.0035
VAL 1320.0032
ALA 1330.0030
VAL 1340.0029
GLU 1350.0028
THR 1360.0029
ASN 1370.0024
LEU 1380.0022
ALA 1390.0017
SER 1400.0017
LEU 1410.0018
GLU 1420.0019
ASN 1430.0023
PHE 1440.0027
PRO 1450.0032
ILE 1460.0033
GLY 1470.0029
HIS 1480.0036
LEU 1490.0036
LYS 1500.0036
THR 1510.0039
LEU 1520.0036
LYS 1530.0035
GLU 1540.0034
LEU 1550.0031
ASN 1560.0030
VAL 1570.0025
ALA 1580.0024
HIS 1590.0024
ASN 1600.0018
LEU 1610.0011
ILE 1620.0010
GLN 1630.0015
SER 1640.0015
PHE 1650.0013
LYS 1660.0013
LEU 1670.0008
PRO 1680.0016
GLU 1690.0026
TYR 1700.0028
PHE 1710.0023
SER 1720.0026
ASN 1730.0033
LEU 1740.0030
THR 1750.0032
ASN 1760.0035
LEU 1770.0029
GLU 1780.0029
HIS 1790.0028
LEU 1800.0023
ASP 1810.0025
LEU 1820.0017
SER 1830.0027
SER 1840.0033
ASN 1850.0025
LYS 1860.0027
ILE 1870.0037
GLN 1880.0048
SER 1890.0045
ILE 1900.0037
TYR 1910.0040
CYS 1920.0039
THR 1930.0037
ASP 1940.0024
LEU 1950.0020
ARG 1960.0029
VAL 1970.0021
LEU 1980.0014
HIS 1990.0024
GLN 2000.0031
MET 2010.0026
PRO 2020.0021
LEU 2030.0025
LEU 2040.0020
ASN 2050.0021
LEU 2060.0017
SER 2070.0023
LEU 2080.0020
ASP 2090.0031
LEU 2100.0033
SER 2110.0046
LEU 2120.0057
ASN 2130.0052
PRO 2140.0061
MET 2150.0056
ASN 2160.0066
PHE 2170.0060
ILE 2180.0051
GLN 2190.0054
PRO 2200.0057
GLY 2210.0049
ALA 2220.0039
PHE 2230.0031
LYS 2240.0035
GLU 2250.0027
ILE 2260.0017
ARG 2270.0008
LEU 2280.0014
HIS 2290.0020
LYS 2300.0029
LEU 2310.0033
THR 2320.0043
LEU 2330.0051
ARG 2340.0062
ASN 2350.0073
ASN 2360.0070
PHE 2370.0079
ASP 2380.0092
SER 2390.0092
LEU 2400.0085
ASN 2410.0087
VAL 2420.0081
MET 2430.0073
LYS 2440.0072
THR 2450.0072
CYS 2460.0064
ILE 2470.0058
GLN 2480.0061
GLY 2490.0055
LEU 2500.0045
ALA 2510.0046
GLY 2520.0035
LEU 2530.0029
GLU 2540.0020
VAL 2550.0025
HIS 2560.0025
ARG 2570.0035
LEU 2580.0040
VAL 2590.0049
LEU 2600.0056
GLY 2610.0065
GLU 2620.0075
PHE 2630.0087
ARG 2640.0100
ASN 2650.0111
GLU 2660.0105
GLY 2670.0107
ASN 2680.0097
LEU 2690.0090
GLU 2700.0098
LYS 2710.0087
PHE 2720.0069
ASP 2730.0064
LYS 2740.0054
SER 2750.0058
ALA 2760.0061
LEU 2770.0053
GLU 2780.0051
GLY 2790.0051
LEU 2800.0044
CYS 2810.0038
ASN 2820.0042
LEU 2830.0035
THR 2840.0027
ILE 2850.0031
GLU 2860.0029
GLU 2870.0035
PHE 2880.0040
ARG 2890.0047
LEU 2900.0052
ALA 2910.0058
TYR 2920.0069
LEU 2930.0067
ASP 2940.0078
TYR 2950.0070
TYR 2960.0062
LEU 2970.0042
ASP 2980.0035
GLY 2990.0030
ILE 3000.0031
ILE 3010.0027
ASP 3020.0034
LEU 3030.0041
PHE 3040.0037
ASN 3050.0032
CYS 3060.0036
LEU 3070.0035
THR 3080.0031
ASN 3090.0030
VAL 3100.0033
SER 3110.0032
SER 3120.0035
PHE 3130.0036
SER 3140.0040
LEU 3150.0042
VAL 3160.0048
SER 3170.0055
VAL 3180.0047
THR 3190.0044
ILE 3200.0034
GLU 3210.0032
ARG 3220.0030
VAL 3230.0031
LYS 3240.0029
ASP 3250.0024
PHE 3260.0026
SER 3270.0032
TYR 3280.0031
ASN 3290.0031
PHE 3300.0031
GLY 3310.0033
TRP 3320.0032
GLN 3330.0032
HIS 3340.0031
LEU 3350.0030
GLU 3360.0031
LEU 3370.0028
VAL 3380.0037
ASN 3390.0044
CYS 3400.0037
LYS 3410.0039
PHE 3420.0037
GLY 3430.0039
GLN 3440.0042
PHE 3450.0040
PRO 3460.0032
THR 3470.0035
LEU 3480.0030
LYS 3490.0032
LEU 3500.0030
LYS 3510.0034
SER 3520.0033
LEU 3530.0028
LYS 3540.0027
ARG 3550.0024
LEU 3560.0019
THR 3570.0018
PHE 3580.0023
THR 3590.0030
SER 3600.0039
ASN 3610.0038
LYS 3620.0049
GLY 3630.0045
GLY 3640.0048
ASN 3650.0050
ALA 3660.0056
PHE 3670.0045
SER 3680.0046
GLU 3690.0041
VAL 3700.0034
ASP 3710.0034
LEU 3720.0023
PRO 3730.0026
SER 3740.0026
LEU 3750.0019
GLU 3760.0019
PHE 3770.0015
LEU 3780.0011
ASP 3790.0018
LEU 3800.0024
SER 3810.0033
ARG 3820.0048
ASN 3830.0048
GLY 3840.0057
LEU 3850.0049
SER 3860.0053
PHE 3870.0044
LYS 3880.0046
GLY 3890.0036
CYS 3900.0025
CYS 3910.0014
SER 3920.0019
GLN 3930.0024
SER 3940.0033
ASP 3950.0029
PHE 3960.0024
GLY 3970.0026
THR 3980.0020
ILE 3990.0025
SER 4000.0022
LEU 4010.0012
LYS 4020.0023
TYR 4030.0024
LEU 4040.0021
ASP 4050.0030
LEU 4060.0033
SER 4070.0048
PHE 4080.0061
ASN 4090.0056
GLY 4100.0062
VAL 4110.0055
ILE 4120.0041
THR 4130.0035
MET 4140.0022
SER 4150.0020
SER 4160.0014
ASN 4170.0013
PHE 4180.0011
LEU 4190.0026
GLY 4200.0030
LEU 4210.0018
GLU 4220.0035
GLN 4230.0034
LEU 4240.0031
GLU 4250.0046
HIS 4260.0047
LEU 4270.0043
ASP 4280.0050
PHE 4290.0049
GLN 4300.0061
HIS 4310.0066
SER 4320.0059
ASN 4330.0059
LEU 4340.0045
LYS 4350.0039
GLN 4360.0027
MET 4370.0026
SER 4380.0021
GLU 4390.0007
PHE 4400.0013
SER 4410.0026
VAL 4420.0017
PHE 4430.0030
LEU 4440.0035
SER 4450.0037
LEU 4460.0041
ARG 4470.0061
ASN 4480.0063
LEU 4490.0059
ILE 4500.0078
TYR 4510.0078
LEU 4520.0065
ASP 4530.0069
ILE 4540.0062
SER 4550.0073
HIS 4560.0073
THR 4570.0061
HIS 4580.0061
THR 4590.0051
ARG 4600.0050
VAL 4610.0047
ALA 4620.0029
PHE 4630.0028
ASN 4640.0043
GLY 4650.0041
ILE 4660.0038
PHE 4670.0051
ASN 4680.0053
GLY 4690.0057
LEU 4700.0066
SER 4710.0082
SER 4720.0092
LEU 4730.0086
GLU 4740.0104
VAL 4750.0101
LEU 4760.0085
LYS 4770.0082
MET 4780.0074
ALA 4790.0082
GLY 4800.0079
ASN 4810.0068
SER 4820.0057
PHE 4830.0047
GLN 4840.0035
GLU 4850.0030
ASN 4860.0041
PHE 4870.0037
LEU 4880.0049
PRO 4890.0047
ASP 4900.0060
ILE 4910.0060
PHE 4920.0073
THR 4930.0080
GLU 4940.0082
LEU 4950.0087
ARG 4960.0105
ASN 4970.0116
LEU 4980.0107
THR 4990.0123
PHE 5000.0115
LEU 5010.0098
ASP 5020.0089
LEU 5030.0079
SER 5040.0084
GLN 5050.0080
CYS 5060.0069
GLN 5070.0056
LEU 5080.0049
GLU 5090.0039
GLN 5100.0036
LEU 5110.0046
SER 5120.0050
PRO 5130.0062
THR 5140.0074
ALA 5150.0070
PHE 5160.0085
ASN 5170.0095
SER 5180.0106
LEU 5190.0109
SER 5200.0125
SER 5210.0133
LEU 5220.0120
GLN 5230.0133
VAL 5240.0121
LEU 5250.0098
ASN 5260.0094
MET 5270.0074
SER 5280.0078
HIS 5290.0076
ASN 5300.0062
ASN 5310.0051
PHE 5320.0034
PHE 5330.0027
SER 5340.0020
LEU 5350.0034
ASP 5360.0040
THR 5370.0061
PHE 5380.0070
PRO 5390.0074
TYR 5400.0087
LYS 5410.0101
CYS 5420.0113
LEU 5430.0115
ASN 5440.0135
SER 5450.0140
LEU 5460.0123
GLN 5470.0126
VAL 5480.0112
LEU 5490.0088
ASP 5500.0084
TYR 5510.0066
SER 5520.0068
LEU 5530.0068
ASN 5540.0054
HIS 5550.0046
ILE 5560.0037
MET 5570.0034
THR 5580.0018
SER 5590.0017
LYS 5600.0028
LYS 5610.0041
GLN 5620.0044
GLU 5630.0060
LEU 5640.0051
GLN 5650.0071
HIS 5660.0084
PHE 5670.0086
PRO 5680.0109
SER 5690.0124
SER 5700.0133
LEU 5710.0115
ALA 5720.0109
PHE 5730.0097
LEU 5740.0074
ASN 5750.0075
LEU 5760.0060
THR 5770.0064
GLN 5780.0066
ASN 5790.0053
ASP 5800.0053
PHE 5810.0044
ALA 5820.0057
CYS 5830.0067
THR 5840.0077
CYS 5850.0079
GLU 5860.0077
HIS 5870.0044
GLN 5880.0037
SER 5890.0029
PHE 5900.0015
LEU 5910.0024
GLN 5920.0017
TRP 5930.0027
ILE 5940.0039
LYS 5950.0046
ASP 5960.0049
GLN 5970.0058
ARG 5980.0073
GLN 5990.0093
LEU 6000.0082
LEU 6010.0077
VAL 6020.0073
GLU 6030.0078
VAL 6040.0098
GLU 6050.0104
ARG 6060.0083
MET 6070.0074
GLU 6080.0080
CYS 6090.0073
ALA 6100.0085
THR 6110.0088
PRO 6120.0109
SER 6130.0129
ASP 6140.0139
LYS 6150.0115
GLN 6160.0110
GLY 6170.0109
MET 6180.0096
PRO 6190.0083
VAL 6200.0059
LEU 6210.0059
SER 6220.0078
LEU 6230.0068
ASN 6240.0067
ILE 6250.0048
THR 6260.0064
CYS 6270.0108
GLU 10.0078
ALA 20.0061
ALA 30.0067
ALA 40.0059
LYS 50.0018
MET 60.0028
GLN 70.0051
ARG 80.0049
LEU 90.0044
VAL 100.0058
LEU 110.0063
LEU 120.0064
LEU 130.0058
ALA 140.0062
ILE 150.0071
SER 160.0059
LEU 170.0036
LEU 180.0026
LEU 190.0038
TYR 200.0041
GLN 210.0023
ASP 220.0019
LEU 230.0030
PRO 240.0039
VAL 250.0045
ARG 260.0049
SER 270.0044
GLU 280.0047
PHE 290.0048
GLU 300.0041
LEU 310.0039
ASP 320.0038
ARG 330.0036
ILE 340.0035
CYS 350.0035
GLY 360.0026
TYR 370.0019
GLY 380.0031
THR 390.0034
ALA 400.0041
ARG 410.0037
CYS 420.0037
ARG 430.0034
LYS 440.0033
LYS 450.0035
CYS 460.0040
ARG 470.0038
SER 480.0041
GLN 490.0040
GLU 500.0041
TYR 510.0044
ARG 520.0044
ILE 530.0048
GLY 540.0048
ARG 550.0047
CYS 560.0043
PRO 570.0046
ASN 580.0042
THR 590.0041
TYR 600.0038
ALA 610.0038
CYS 620.0039
CYS 630.0038
LEU 640.0039
ARG 650.0038
LYS 660.0042
TRP 670.0040
ASP 680.0036
GLU 690.0035
SER 700.0031
LEU 710.0035
LEU 720.0035
ASN 730.0029
ARG 740.0028
THR 750.0030
LYS 760.0035
PRO 770.0029
GLU 780.0020
ALA 790.0029
ALA 800.0039
ALA 810.0086
LYS 820.0084
LYS 830.0075
GLU 840.0073
MET 850.0067
ASN 860.0059
LEU 870.0042
SER 880.0029
VAL 890.0014
GLY 900.0016
LEU 910.0020
GLY 920.0046
GLY 930.0054
GLY 940.0052
SER 950.0028
ASN 960.0028
LEU 970.0024
SER 980.0039
VAL 990.0047
GLY 1000.0064
LEU 1010.0062
GLY 1020.0077
GLU 1030.0090
ILE 1040.0104
GLY 1050.0124
GLY 1060.0139
GLY 1070.0105
SER 1080.0091
LYS 1090.0068
LEU 1100.0074
LEU 1110.0084
ASP 1120.0085
ILE 1130.0068
ASN 1140.0081
LEU 1150.0072
GLY 1160.0110
ARG 1170.0133
GLY 1180.0107
GLY 1190.0116
GLY 1200.0109
SER 1210.0060
MET 1220.0048
VAL 1230.0033
ASP 1240.0017
LEU 1250.0016
THR 1260.0017
PHE 1270.0028
GLY 1280.0041
GLY 1290.0047
VAL 1300.0067
GLY 1310.0073
GLY 1320.0091
GLY 1330.0087
SER 1340.0087
THR 1350.0083
PHE 1360.0054
THR 1370.0060
PHE 1380.0050
PHE 1390.0057
PRO 1400.0055
LEU 1410.0045
VAL 1420.0050
ILE 1430.0049
GLY 1440.0053
GLY 1450.0076
GLY 1460.0044
SER 1470.0031
ASP 1480.0032
ALA 1490.0029
MET 1500.0033
TYR 1510.0027
LEU 1520.0029
GLY 1530.0034
PHE 1540.0045
ALA 1550.0056
ALA 1560.0090
GLY 1570.0116
GLY 1580.0141
GLY 1590.0131
SER 1600.0113
ALA 1610.0056
GLY 1620.0030
GLY 1630.0016
GLU 1640.0011
ASN 1650.0019
HIS 1660.0017
VAL 1670.0022
ALA 1680.0028
PHE 1690.0038
GLY 1700.0045
PRO 1710.0082
GLY 1720.0073
PRO 1730.0062
GLY 1740.0046
VAL 1750.0040
ASP 1760.0036
LEU 1770.0034
THR 1780.0032
PHE 1790.0030
GLY 1800.0029
GLY 1810.0042
VAL 1820.0038
GLN 1830.0031
PHE 1840.0029
ALA 1850.0022
MET 1860.0074
VAL 1870.0152
ASN 1880.0166
ASN 1890.0280
GLY 1900.0279
PRO 1910.0224
GLY 1920.0244
PRO 1930.0209
GLY 1940.0162
GLU 1950.0056
SER 1960.0061
PHE 1970.0061
THR 1980.0042
ALA 1990.0038
GLN 2000.0033
PRO 2010.0013
ALA 2020.0056
ASP 2030.0046
MET 2040.0010
GLN 2050.0051
ALA 2060.0021
GLY 2070.0040
ILE 2080.0029
LYS 2090.0017
GLY 2100.0068
PRO 2110.0072
GLY 2120.0018
PRO 2130.0066
GLY 2140.0075
GLY 2150.0065
SER 2160.0078
ILE 2170.0101
GLN 2180.0062
VAL 2190.0067
ILE 2200.0128
ASN 2210.0085
GLY 2220.0060
SER 2230.0139
THR 2240.0217
ILE 2250.0256
GLY 2260.0236
THR 2270.0290
GLY 2280.0288
SER 2290.0356
LYS 2300.0307
LYS 2310.0298
THR 2320.0275
ILE 2330.0233
LEU 2340.0214
ILE 2350.0200
TYR 2360.0205
SER 2370.0202
ILE 2380.0179
ILE 2390.0167
GLY 2400.0161
VAL 2410.0135
LYS 2420.0108
LYS 2430.0106
GLY 2440.0090
THR 2450.0089
LEU 2460.0137
ALA 2470.0141
TRP 2480.0147
ALA 2490.0163
ARG 2500.0182
THR 2510.0219
GLY 2520.0213
PHE 2530.0202
SER 2540.0233
PRO 2550.0248
ALA 2560.0196
LYS 2570.0226
LYS 2580.0221
LEU 2590.0270
ASN 2600.0300
ALA 2610.0419
GLY 2620.0308
VAL 2630.0208
VAL 2640.0242
ARG 2650.0086
VAL 2660.0115
PHE 2670.0111
PHE 2680.0071
LEU 2690.0102
ASN 2700.0093
GLN 2710.0065
LYS 2720.0040
LYS 2730.0073
ALA 2740.0063
LYS 2750.0033
ASP 2760.0106
VAL 2770.0152
LEU 2780.0105
ARG 2790.0087
LYS 2800.0184
THR 2810.0347
SER 2820.0277
ARG 2830.0281
PRO 2840.0292
MET 2850.0413
VAL 2860.0352
ASP 2870.0797
LEU 2880.0661
THR 2890.1163
PHE 2900.0725
GLY 2910.1061
GLY 2920.1518

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.