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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 53  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0569
GLU 270.0131
PRO 280.0163
CYS 290.0126
VAL 300.0152
GLU 310.0134
VAL 320.0167
VAL 330.0155
PRO 340.0111
ASN 350.0079
ILE 360.0115
THR 370.0111
TYR 380.0088
GLN 390.0111
CYS 400.0096
MET 410.0123
GLU 420.0149
LEU 430.0150
ASN 440.0154
PHE 450.0124
TYR 460.0139
LYS 470.0117
ILE 480.0079
PRO 490.0086
ASP 500.0106
ASN 510.0101
LEU 520.0057
PRO 530.0059
PHE 540.0098
SER 550.0104
THR 560.0079
LYS 570.0108
ASN 580.0098
LEU 590.0064
ASP 600.0072
LEU 610.0056
SER 620.0077
PHE 630.0095
ASN 640.0089
PRO 650.0096
LEU 660.0077
ARG 670.0067
HIS 680.0076
LEU 690.0073
GLY 700.0098
SER 710.0112
TYR 720.0119
SER 730.0097
PHE 740.0088
PHE 750.0118
SER 760.0109
PHE 770.0094
PRO 780.0128
GLU 790.0125
LEU 800.0098
GLN 810.0113
VAL 820.0089
LEU 830.0065
ASP 840.0060
LEU 850.0043
SER 860.0056
ARG 870.0056
CYS 880.0047
GLU 890.0050
ILE 900.0040
GLN 910.0047
THR 920.0060
ILE 930.0061
GLU 940.0084
ASP 950.0100
GLY 960.0103
ALA 970.0088
TYR 980.0087
GLN 990.0115
SER 1000.0118
LEU 1010.0105
SER 1020.0123
HIS 1030.0123
LEU 1040.0097
SER 1050.0100
THR 1060.0082
LEU 1070.0066
ILE 1080.0060
LEU 1090.0047
THR 1100.0053
GLY 1110.0047
ASN 1120.0031
PRO 1130.0029
ILE 1140.0029
GLN 1150.0036
SER 1160.0051
LEU 1170.0048
ALA 1180.0063
LEU 1190.0070
GLY 1200.0083
ALA 1210.0070
PHE 1220.0070
SER 1230.0087
GLY 1240.0096
LEU 1250.0090
SER 1260.0109
SER 1270.0082
LEU 1280.0073
GLN 1290.0076
LYS 1300.0071
LEU 1310.0065
VAL 1320.0065
ALA 1330.0060
VAL 1340.0064
GLU 1350.0057
THR 1360.0048
ASN 1370.0049
LEU 1380.0054
ALA 1390.0060
SER 1400.0065
LEU 1410.0067
GLU 1420.0065
ASN 1430.0058
PHE 1440.0059
PRO 1450.0060
ILE 1460.0064
GLY 1470.0054
HIS 1480.0059
LEU 1490.0063
LYS 1500.0069
THR 1510.0074
LEU 1520.0070
LYS 1530.0067
GLU 1540.0068
LEU 1550.0075
ASN 1560.0077
VAL 1570.0072
ALA 1580.0073
HIS 1590.0069
ASN 1600.0066
LEU 1610.0064
ILE 1620.0065
GLN 1630.0063
SER 1640.0057
PHE 1650.0053
LYS 1660.0051
LEU 1670.0052
PRO 1680.0054
GLU 1690.0053
TYR 1700.0058
PHE 1710.0057
SER 1720.0051
ASN 1730.0056
LEU 1740.0058
THR 1750.0061
ASN 1760.0066
LEU 1770.0069
GLU 1780.0062
HIS 1790.0064
LEU 1800.0073
ASP 1810.0075
LEU 1820.0068
SER 1830.0070
SER 1840.0074
ASN 1850.0072
LYS 1860.0070
ILE 1870.0068
GLN 1880.0073
SER 1890.0065
ILE 1900.0055
TYR 1910.0056
CYS 1920.0042
THR 1930.0040
ASP 1940.0044
LEU 1950.0037
ARG 1960.0035
VAL 1970.0037
LEU 1980.0034
HIS 1990.0030
GLN 2000.0035
MET 2010.0038
PRO 2020.0039
LEU 2030.0047
LEU 2040.0046
ASN 2050.0048
LEU 2060.0045
SER 2070.0057
LEU 2080.0053
ASP 2090.0059
LEU 2100.0056
SER 2110.0064
LEU 2120.0083
ASN 2130.0079
PRO 2140.0092
MET 2150.0078
ASN 2160.0096
PHE 2170.0091
ILE 2180.0076
GLN 2190.0074
PRO 2200.0077
GLY 2210.0067
ALA 2220.0052
PHE 2230.0045
LYS 2240.0056
GLU 2250.0055
ILE 2260.0041
ARG 2270.0038
LEU 2280.0033
HIS 2290.0042
LYS 2300.0037
LEU 2310.0033
THR 2320.0045
LEU 2330.0052
ARG 2340.0071
ASN 2350.0097
ASN 2360.0097
PHE 2370.0126
ASP 2380.0163
SER 2390.0165
LEU 2400.0152
ASN 2410.0169
VAL 2420.0142
MET 2430.0116
LYS 2440.0126
THR 2450.0129
CYS 2460.0099
ILE 2470.0091
GLN 2480.0106
GLY 2490.0092
LEU 2500.0069
ALA 2510.0085
GLY 2520.0076
LEU 2530.0051
GLU 2540.0050
VAL 2550.0034
HIS 2560.0044
ARG 2570.0034
LEU 2580.0020
VAL 2590.0026
LEU 2600.0041
GLY 2610.0057
GLU 2620.0092
PHE 2630.0132
ARG 2640.0166
ASN 2650.0202
GLU 2660.0183
GLY 2670.0189
ASN 2680.0161
LEU 2690.0153
GLU 2700.0181
LYS 2710.0163
PHE 2720.0124
ASP 2730.0139
LYS 2740.0134
SER 2750.0147
ALA 2760.0124
LEU 2770.0098
GLU 2780.0125
GLY 2790.0115
LEU 2800.0087
CYS 2810.0112
ASN 2820.0102
LEU 2830.0075
THR 2840.0073
ILE 2850.0053
GLU 2860.0061
GLU 2870.0048
PHE 2880.0029
ARG 2890.0014
LEU 2900.0015
ALA 2910.0036
TYR 2920.0071
LEU 2930.0077
ASP 2940.0109
TYR 2950.0109
TYR 2960.0090
LEU 2970.0065
ASP 2980.0077
GLY 2990.0075
ILE 3000.0073
ILE 3010.0107
ASP 3020.0119
LEU 3030.0093
PHE 3040.0078
ASN 3050.0109
CYS 3060.0100
LEU 3070.0073
THR 3080.0094
ASN 3090.0100
VAL 3100.0074
SER 3110.0084
SER 3120.0072
PHE 3130.0055
SER 3140.0041
LEU 3150.0023
VAL 3160.0037
SER 3170.0054
VAL 3180.0029
THR 3190.0025
ILE 3200.0018
GLU 3210.0026
ARG 3220.0043
VAL 3230.0053
LYS 3240.0088
ASP 3250.0086
PHE 3260.0086
SER 3270.0102
TYR 3280.0106
ASN 3290.0117
PHE 3300.0100
GLY 3310.0106
TRP 3320.0091
GLN 3330.0097
HIS 3340.0089
LEU 3350.0085
GLU 3360.0080
LEU 3370.0065
VAL 3380.0070
ASN 3390.0074
CYS 3400.0053
LYS 3410.0051
PHE 3420.0057
GLY 3430.0055
GLN 3440.0076
PHE 3450.0090
PRO 3460.0084
THR 3470.0096
LEU 3480.0098
LYS 3490.0107
LEU 3500.0106
LYS 3510.0118
SER 3520.0109
LEU 3530.0106
LYS 3540.0108
ARG 3550.0105
LEU 3560.0107
THR 3570.0098
PHE 3580.0095
THR 3590.0098
SER 3600.0099
ASN 3610.0090
LYS 3620.0100
GLY 3630.0095
GLY 3640.0101
ASN 3650.0111
ALA 3660.0123
PHE 3670.0118
SER 3680.0117
GLU 3690.0116
VAL 3700.0110
ASP 3710.0109
LEU 3720.0112
PRO 3730.0111
SER 3740.0108
LEU 3750.0109
GLU 3760.0108
PHE 3770.0092
LEU 3780.0095
ASP 3790.0097
LEU 3800.0103
SER 3810.0105
ARG 3820.0104
ASN 3830.0111
GLY 3840.0126
LEU 3850.0123
SER 3860.0137
PHE 3870.0129
LYS 3880.0141
GLY 3890.0137
CYS 3900.0117
CYS 3910.0105
SER 3920.0107
GLN 3930.0105
SER 3940.0118
ASP 3950.0117
PHE 3960.0109
GLY 3970.0109
THR 3980.0100
ILE 3990.0095
SER 4000.0090
LEU 4010.0092
LYS 4020.0072
TYR 4030.0071
LEU 4040.0074
ASP 4050.0078
LEU 4060.0087
SER 4070.0075
PHE 4080.0094
ASN 4090.0106
GLY 4100.0123
VAL 4110.0126
ILE 4120.0112
THR 4130.0124
MET 4140.0115
SER 4150.0133
SER 4160.0125
ASN 4170.0111
PHE 4180.0097
LEU 4190.0110
GLY 4200.0101
LEU 4210.0087
GLU 4220.0087
GLN 4230.0073
LEU 4240.0059
GLU 4250.0057
HIS 4260.0048
LEU 4270.0042
ASP 4280.0043
PHE 4290.0053
GLN 4300.0055
HIS 4310.0070
SER 4320.0082
ASN 4330.0096
LEU 4340.0090
LYS 4350.0108
GLN 4360.0115
MET 4370.0083
SER 4380.0087
GLU 4390.0112
PHE 4400.0109
SER 4410.0095
VAL 4420.0088
PHE 4430.0077
LEU 4440.0098
SER 4450.0101
LEU 4460.0081
ARG 4470.0091
ASN 4480.0082
LEU 4490.0060
ILE 4500.0059
TYR 4510.0042
LEU 4520.0028
ASP 4530.0022
ILE 4540.0026
SER 4550.0031
HIS 4560.0045
THR 4570.0059
HIS 4580.0064
THR 4590.0050
ARG 4600.0045
VAL 4610.0031
ALA 4620.0051
PHE 4630.0056
ASN 4640.0052
GLY 4650.0066
ILE 4660.0056
PHE 4670.0050
ASN 4680.0071
GLY 4690.0082
LEU 4700.0069
SER 4710.0087
SER 4720.0084
LEU 4730.0066
GLU 4740.0070
VAL 4750.0057
LEU 4760.0040
LYS 4770.0029
MET 4780.0020
ALA 4790.0031
GLY 4800.0033
ASN 4810.0021
SER 4820.0026
PHE 4830.0020
GLN 4840.0020
GLU 4850.0033
ASN 4860.0040
PHE 4870.0036
LEU 4880.0036
PRO 4890.0033
ASP 4900.0039
ILE 4910.0040
PHE 4920.0042
THR 4930.0052
GLU 4940.0062
LEU 4950.0062
ARG 4960.0077
ASN 4970.0080
LEU 4980.0069
THR 4990.0080
PHE 5000.0072
LEU 5010.0056
ASP 5020.0053
LEU 5030.0048
SER 5040.0052
GLN 5050.0048
CYS 5060.0041
GLN 5070.0050
LEU 5080.0054
GLU 5090.0061
GLN 5100.0063
LEU 5110.0063
SER 5120.0056
PRO 5130.0065
THR 5140.0059
ALA 5150.0055
PHE 5160.0063
ASN 5170.0061
SER 5180.0060
LEU 5190.0066
SER 5200.0078
SER 5210.0083
LEU 5220.0074
GLN 5230.0085
VAL 5240.0082
LEU 5250.0073
ASN 5260.0072
MET 5270.0072
SER 5280.0073
HIS 5290.0074
ASN 5300.0073
ASN 5310.0072
PHE 5320.0088
PHE 5330.0088
SER 5340.0086
LEU 5350.0084
ASP 5360.0088
THR 5370.0085
PHE 5380.0088
PRO 5390.0084
TYR 5400.0083
LYS 5410.0088
CYS 5420.0078
LEU 5430.0079
ASN 5440.0084
SER 5450.0085
LEU 5460.0083
GLN 5470.0084
VAL 5480.0083
LEU 5490.0082
ASP 5500.0081
TYR 5510.0081
SER 5520.0083
LEU 5530.0091
ASN 5540.0098
HIS 5550.0101
ILE 5560.0093
MET 5570.0108
THR 5580.0095
SER 5590.0086
LYS 5600.0093
LYS 5610.0092
GLN 5620.0086
GLU 5630.0091
LEU 5640.0082
GLN 5650.0087
HIS 5660.0090
PHE 5670.0083
PRO 5680.0084
SER 5690.0089
SER 5700.0086
LEU 5710.0084
ALA 5720.0068
PHE 5730.0070
LEU 5740.0073
ASN 5750.0077
LEU 5760.0079
THR 5770.0079
GLN 5780.0102
ASN 5790.0109
ASP 5800.0128
PHE 5810.0113
ALA 5820.0148
CYS 5830.0144
THR 5840.0163
CYS 5850.0152
GLU 5860.0144
HIS 5870.0111
GLN 5880.0097
SER 5890.0067
PHE 5900.0068
LEU 5910.0082
GLN 5920.0080
TRP 5930.0061
ILE 5940.0069
LYS 5950.0080
ASP 5960.0070
GLN 5970.0056
ARG 5980.0066
GLN 5990.0055
LEU 6000.0054
LEU 6010.0068
VAL 6020.0056
GLU 6030.0057
VAL 6040.0061
GLU 6050.0073
ARG 6060.0081
MET 6070.0094
GLU 6080.0130
CYS 6090.0151
ALA 6100.0179
THR 6110.0198
PRO 6120.0224
SER 6130.0259
ASP 6140.0260
LYS 6150.0217
GLN 6160.0216
GLY 6170.0188
MET 6180.0172
PRO 6190.0136
VAL 6200.0117
LEU 6210.0106
SER 6220.0145
LEU 6230.0159
ASN 6240.0182
ILE 6250.0159
THR 6260.0196
CYS 6270.0275
GLU 10.0260
ALA 20.0311
ALA 30.0248
ALA 40.0152
LYS 50.0220
MET 60.0240
GLN 70.0185
ARG 80.0178
LEU 90.0254
VAL 100.0260
LEU 110.0214
LEU 120.0240
LEU 130.0243
ALA 140.0223
ILE 150.0235
SER 160.0184
LEU 170.0166
LEU 180.0181
LEU 190.0173
TYR 200.0154
GLN 210.0132
ASP 220.0137
LEU 230.0127
PRO 240.0147
VAL 250.0150
ARG 260.0051
SER 270.0064
GLU 280.0077
PHE 290.0051
GLU 300.0054
LEU 310.0085
ASP 320.0102
ARG 330.0081
ILE 340.0125
CYS 350.0180
GLY 360.0148
TYR 370.0143
GLY 380.0129
THR 390.0148
ALA 400.0139
ARG 410.0106
CYS 420.0199
ARG 430.0230
LYS 440.0339
LYS 450.0297
CYS 460.0139
ARG 470.0102
SER 480.0083
GLN 490.0029
GLU 500.0047
TYR 510.0125
ARG 520.0253
ILE 530.0323
GLY 540.0419
ARG 550.0464
CYS 560.0388
PRO 570.0452
ASN 580.0445
THR 590.0525
TYR 600.0415
ALA 610.0297
CYS 620.0237
CYS 630.0165
LEU 640.0138
ARG 650.0065
LYS 660.0038
TRP 670.0050
ASP 680.0057
GLU 690.0061
SER 700.0071
LEU 710.0075
LEU 720.0066
ASN 730.0057
ARG 740.0073
THR 750.0083
LYS 760.0090
PRO 770.0097
GLU 780.0084
ALA 790.0093
ALA 800.0112
ALA 810.0099
LYS 820.0088
LYS 830.0069
GLU 840.0064
MET 850.0046
ASN 860.0034
LEU 870.0030
SER 880.0030
VAL 890.0034
GLY 900.0042
LEU 910.0059
GLY 920.0088
GLY 930.0124
GLY 940.0124
SER 950.0101
ASN 960.0055
LEU 970.0053
SER 980.0044
VAL 990.0051
GLY 1000.0055
LEU 1010.0059
GLY 1020.0055
GLU 1030.0040
ILE 1040.0059
GLY 1050.0083
GLY 1060.0161
GLY 1070.0125
SER 1080.0093
LYS 1090.0047
LEU 1100.0035
LEU 1110.0021
ASP 1120.0019
ILE 1130.0014
ASN 1140.0041
LEU 1150.0037
GLY 1160.0059
ARG 1170.0053
GLY 1180.0025
GLY 1190.0024
GLY 1200.0064
SER 1210.0040
MET 1220.0031
VAL 1230.0029
ASP 1240.0021
LEU 1250.0022
THR 1260.0025
PHE 1270.0033
GLY 1280.0046
GLY 1290.0051
VAL 1300.0061
GLY 1310.0081
GLY 1320.0057
GLY 1330.0018
SER 1340.0045
THR 1350.0045
PHE 1360.0044
THR 1370.0053
PHE 1380.0034
PHE 1390.0048
PRO 1400.0043
LEU 1410.0044
VAL 1420.0081
ILE 1430.0093
GLY 1440.0117
GLY 1450.0186
GLY 1460.0202
SER 1470.0169
ASP 1480.0126
ALA 1490.0104
MET 1500.0059
TYR 1510.0046
LEU 1520.0026
GLY 1530.0028
PHE 1540.0051
ALA 1550.0072
ALA 1560.0102
GLY 1570.0104
GLY 1580.0097
GLY 1590.0067
SER 1600.0037
ALA 1610.0049
GLY 1620.0046
GLY 1630.0044
GLU 1640.0030
ASN 1650.0016
HIS 1660.0009
VAL 1670.0015
ALA 1680.0020
PHE 1690.0033
GLY 1700.0039
PRO 1710.0117
GLY 1720.0141
PRO 1730.0152
GLY 1740.0110
VAL 1750.0059
ASP 1760.0044
LEU 1770.0035
THR 1780.0033
PHE 1790.0031
GLY 1800.0039
GLY 1810.0042
VAL 1820.0050
GLN 1830.0048
PHE 1840.0052
ALA 1850.0060
MET 1860.0054
VAL 1870.0063
ASN 1880.0043
ASN 1890.0025
GLY 1900.0058
PRO 1910.0133
GLY 1920.0071
PRO 1930.0037
GLY 1940.0062
GLU 1950.0067
SER 1960.0063
PHE 1970.0053
THR 1980.0117
ALA 1990.0135
GLN 2000.0076
PRO 2010.0062
ALA 2020.0052
ASP 2030.0103
MET 2040.0169
GLN 2050.0230
ALA 2060.0122
GLY 2070.0131
ILE 2080.0190
LYS 2090.0175
GLY 2100.0281
PRO 2110.0420
GLY 2120.0176
PRO 2130.0343
GLY 2140.0451
GLY 2150.0214
SER 2160.0206
ILE 2170.0185
GLN 2180.0104
VAL 2190.0238
ILE 2200.0175
ASN 2210.0182
GLY 2220.0143
SER 2230.0093
THR 2240.0030
ILE 2250.0022
GLY 2260.0114
THR 2270.0114
GLY 2280.0108
SER 2290.0130
LYS 2300.0125
LYS 2310.0139
THR 2320.0151
ILE 2330.0145
LEU 2340.0149
ILE 2350.0159
TYR 2360.0154
SER 2370.0176
ILE 2380.0162
ILE 2390.0134
GLY 2400.0148
VAL 2410.0162
LYS 2420.0143
LYS 2430.0163
GLY 2440.0156
THR 2450.0126
LEU 2460.0097
ALA 2470.0058
TRP 2480.0066
ALA 2490.0112
ARG 2500.0149
THR 2510.0185
GLY 2520.0158
PHE 2530.0138
SER 2540.0115
PRO 2550.0085
ALA 2560.0126
LYS 2570.0104
LYS 2580.0179
LEU 2590.0285
ASN 2600.0435
ALA 2610.0544
GLY 2620.0357
VAL 2630.0318
VAL 2640.0165
ARG 2650.0183
VAL 2660.0115
PHE 2670.0097
PHE 2680.0066
LEU 2690.0075
ASN 2700.0104
GLN 2710.0063
LYS 2720.0058
LYS 2730.0073
ALA 2740.0079
LYS 2750.0072
ASP 2760.0078
VAL 2770.0054
LEU 2780.0059
ARG 2790.0052
LYS 2800.0039
THR 2810.0043
SER 2820.0086
ARG 2830.0080
PRO 2840.0120
MET 2850.0151
VAL 2860.0156
ASP 2870.0207
LEU 2880.0153
THR 2890.0295
PHE 2900.0271
GLY 2910.0150
GLY 2920.0569

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.