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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 54  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1014
GLU 270.0045
PRO 280.0053
CYS 290.0043
VAL 300.0052
GLU 310.0049
VAL 320.0059
VAL 330.0055
PRO 340.0043
ASN 350.0031
ILE 360.0041
THR 370.0040
TYR 380.0033
GLN 390.0037
CYS 400.0030
MET 410.0036
GLU 420.0042
LEU 430.0043
ASN 440.0042
PHE 450.0035
TYR 460.0039
LYS 470.0035
ILE 480.0025
PRO 490.0027
ASP 500.0033
ASN 510.0033
LEU 520.0021
PRO 530.0021
PHE 540.0031
SER 550.0034
THR 560.0029
LYS 570.0038
ASN 580.0036
LEU 590.0025
ASP 600.0026
LEU 610.0019
SER 620.0023
PHE 630.0025
ASN 640.0023
PRO 650.0025
LEU 660.0022
ARG 670.0021
HIS 680.0026
LEU 690.0027
GLY 700.0034
SER 710.0039
TYR 720.0041
SER 730.0034
PHE 740.0032
PHE 750.0039
SER 760.0035
PHE 770.0032
PRO 780.0042
GLU 790.0041
LEU 800.0034
GLN 810.0039
VAL 820.0033
LEU 830.0026
ASP 840.0023
LEU 850.0018
SER 860.0019
ARG 870.0016
CYS 880.0014
GLU 890.0015
ILE 900.0017
GLN 910.0020
THR 920.0024
ILE 930.0026
GLU 940.0032
ASP 950.0038
GLY 960.0038
ALA 970.0033
TYR 980.0033
GLN 990.0041
SER 1000.0041
LEU 1010.0037
SER 1020.0043
HIS 1030.0042
LEU 1040.0034
SER 1050.0034
THR 1060.0028
LEU 1070.0025
ILE 1080.0022
LEU 1090.0019
THR 1100.0018
GLY 1110.0014
ASN 1120.0013
PRO 1130.0012
ILE 1140.0017
GLN 1150.0019
SER 1160.0024
LEU 1170.0023
ALA 1180.0027
LEU 1190.0030
GLY 1200.0033
ALA 1210.0029
PHE 1220.0028
SER 1230.0033
GLY 1240.0035
LEU 1250.0033
SER 1260.0038
SER 1270.0026
LEU 1280.0024
GLN 1290.0024
LYS 1300.0023
LEU 1310.0021
VAL 1320.0022
ALA 1330.0020
VAL 1340.0020
GLU 1350.0018
THR 1360.0017
ASN 1370.0018
LEU 1380.0020
ALA 1390.0021
SER 1400.0024
LEU 1410.0025
GLU 1420.0025
ASN 1430.0022
PHE 1440.0022
PRO 1450.0023
ILE 1460.0025
GLY 1470.0022
HIS 1480.0023
LEU 1490.0023
LYS 1500.0027
THR 1510.0027
LEU 1520.0023
LYS 1530.0022
GLU 1540.0023
LEU 1550.0026
ASN 1560.0027
VAL 1570.0025
ALA 1580.0025
HIS 1590.0024
ASN 1600.0024
LEU 1610.0023
ILE 1620.0024
GLN 1630.0022
SER 1640.0022
PHE 1650.0022
LYS 1660.0022
LEU 1670.0022
PRO 1680.0022
GLU 1690.0024
TYR 1700.0024
PHE 1710.0025
SER 1720.0023
ASN 1730.0024
LEU 1740.0024
THR 1750.0027
ASN 1760.0028
LEU 1770.0027
GLU 1780.0026
HIS 1790.0027
LEU 1800.0029
ASP 1810.0030
LEU 1820.0029
SER 1830.0030
SER 1840.0031
ASN 1850.0029
LYS 1860.0027
ILE 1870.0029
GLN 1880.0032
SER 1890.0029
ILE 1900.0026
TYR 1910.0029
CYS 1920.0028
THR 1930.0027
ASP 1940.0023
LEU 1950.0023
ARG 1960.0025
VAL 1970.0023
LEU 1980.0024
HIS 1990.0027
GLN 2000.0029
MET 2010.0030
PRO 2020.0033
LEU 2030.0036
LEU 2040.0030
ASN 2050.0032
LEU 2060.0027
SER 2070.0035
LEU 2080.0030
ASP 2090.0032
LEU 2100.0029
SER 2110.0033
LEU 2120.0044
ASN 2130.0038
PRO 2140.0043
MET 2150.0035
ASN 2160.0043
PHE 2170.0040
ILE 2180.0034
GLN 2190.0037
PRO 2200.0039
GLY 2210.0038
ALA 2220.0030
PHE 2230.0027
LYS 2240.0036
GLU 2250.0039
ILE 2260.0031
ARG 2270.0033
LEU 2280.0030
HIS 2290.0038
LYS 2300.0033
LEU 2310.0025
THR 2320.0035
LEU 2330.0030
ARG 2340.0044
ASN 2350.0055
ASN 2360.0049
PHE 2370.0061
ASP 2380.0079
SER 2390.0078
LEU 2400.0068
ASN 2410.0076
VAL 2420.0063
MET 2430.0050
LYS 2440.0052
THR 2450.0055
CYS 2460.0041
ILE 2470.0034
GLN 2480.0044
GLY 2490.0039
LEU 2500.0028
ALA 2510.0038
GLY 2520.0039
LEU 2530.0027
GLU 2540.0034
VAL 2550.0028
HIS 2560.0041
ARG 2570.0039
LEU 2580.0026
VAL 2590.0030
LEU 2600.0028
GLY 2610.0038
GLU 2620.0060
PHE 2630.0084
ARG 2640.0103
ASN 2650.0120
GLU 2660.0107
GLY 2670.0105
ASN 2680.0089
LEU 2690.0080
GLU 2700.0093
LYS 2710.0080
PHE 2720.0057
ASP 2730.0059
LYS 2740.0053
SER 2750.0059
ALA 2760.0048
LEU 2770.0032
GLU 2780.0045
GLY 2790.0042
LEU 2800.0028
CYS 2810.0044
ASN 2820.0043
LEU 2830.0031
THR 2840.0037
ILE 2850.0031
GLU 2860.0045
GLU 2870.0044
PHE 2880.0031
ARG 2890.0033
LEU 2900.0028
ALA 2910.0042
TYR 2920.0057
LEU 2930.0053
ASP 2940.0070
TYR 2950.0064
TYR 2960.0055
LEU 2970.0036
ASP 2980.0039
GLY 2990.0029
ILE 3000.0023
ILE 3010.0039
ASP 3020.0042
LEU 3030.0029
PHE 3040.0022
ASN 3050.0038
CYS 3060.0034
LEU 3070.0027
THR 3080.0040
ASN 3090.0048
VAL 3100.0042
SER 3110.0054
SER 3120.0055
PHE 3130.0042
SER 3140.0042
LEU 3150.0034
VAL 3160.0046
SER 3170.0052
VAL 3180.0037
THR 3190.0034
ILE 3200.0019
GLU 3210.0021
ARG 3220.0017
VAL 3230.0015
LYS 3240.0031
ASP 3250.0030
PHE 3260.0034
SER 3270.0043
TYR 3280.0045
ASN 3290.0053
PHE 3300.0046
GLY 3310.0055
TRP 3320.0053
GLN 3330.0061
HIS 3340.0059
LEU 3350.0053
GLU 3360.0052
LEU 3370.0046
VAL 3380.0055
ASN 3390.0054
CYS 3400.0037
LYS 3410.0030
PHE 3420.0020
GLY 3430.0012
GLN 3440.0015
PHE 3450.0028
PRO 3460.0030
THR 3470.0039
LEU 3480.0045
LYS 3490.0053
LEU 3500.0058
LYS 3510.0069
SER 3520.0067
LEU 3530.0067
LYS 3540.0071
ARG 3550.0070
LEU 3560.0069
THR 3570.0067
PHE 3580.0055
THR 3590.0059
SER 3600.0055
ASN 3610.0041
LYS 3620.0035
GLY 3630.0024
GLY 3640.0016
ASN 3650.0024
ALA 3660.0023
PHE 3670.0039
SER 3680.0039
GLU 3690.0045
VAL 3700.0049
ASP 3710.0055
LEU 3720.0079
PRO 3730.0079
SER 3740.0078
LEU 3750.0079
GLU 3760.0080
PHE 3770.0078
LEU 3780.0069
ASP 3790.0066
LEU 3800.0058
SER 3810.0058
ARG 3820.0050
ASN 3830.0039
GLY 3840.0028
LEU 3850.0022
SER 3860.0015
PHE 3870.0023
LYS 3880.0019
GLY 3890.0026
CYS 3900.0030
CYS 3910.0040
SER 3920.0047
GLN 3930.0056
SER 3940.0055
ASP 3950.0052
PHE 3960.0060
GLY 3970.0082
THR 3980.0082
ILE 3990.0083
SER 4000.0082
LEU 4010.0083
LYS 4020.0074
TYR 4030.0069
LEU 4040.0059
ASP 4050.0056
LEU 4060.0046
SER 4070.0037
PHE 4080.0033
ASN 4090.0022
GLY 4100.0011
VAL 4110.0011
ILE 4120.0017
THR 4130.0016
MET 4140.0020
SER 4150.0026
SER 4160.0031
ASN 4170.0033
PHE 4180.0041
LEU 4190.0050
GLY 4200.0061
LEU 4210.0056
GLU 4220.0056
GLN 4230.0062
LEU 4240.0056
GLU 4250.0055
HIS 4260.0055
LEU 4270.0039
ASP 4280.0034
PHE 4290.0025
GLN 4300.0027
HIS 4310.0025
SER 4320.0014
ASN 4330.0011
LEU 4340.0011
LYS 4350.0013
GLN 4360.0018
MET 4370.0021
SER 4380.0027
GLU 4390.0030
PHE 4400.0031
SER 4410.0028
VAL 4420.0026
PHE 4430.0027
LEU 4440.0033
SER 4450.0040
LEU 4460.0036
ARG 4470.0040
ASN 4480.0042
LEU 4490.0036
ILE 4500.0036
TYR 4510.0038
LEU 4520.0023
ASP 4530.0021
ILE 4540.0016
SER 4550.0019
HIS 4560.0021
THR 4570.0012
HIS 4580.0019
THR 4590.0018
ARG 4600.0025
VAL 4610.0024
ALA 4620.0036
PHE 4630.0035
ASN 4640.0036
GLY 4650.0033
ILE 4660.0027
PHE 4670.0027
ASN 4680.0030
GLY 4690.0030
LEU 4700.0026
SER 4710.0027
SER 4720.0027
LEU 4730.0025
GLU 4740.0026
VAL 4750.0028
LEU 4760.0027
LYS 4770.0020
MET 4780.0023
ALA 4790.0025
GLY 4800.0028
ASN 4810.0029
SER 4820.0036
PHE 4830.0038
GLN 4840.0041
GLU 4850.0044
ASN 4860.0042
PHE 4870.0042
LEU 4880.0041
PRO 4890.0041
ASP 4900.0040
ILE 4910.0038
PHE 4920.0038
THR 4930.0040
GLU 4940.0035
LEU 4950.0034
ARG 4960.0036
ASN 4970.0035
LEU 4980.0036
THR 4990.0038
PHE 5000.0038
LEU 5010.0038
ASP 5020.0034
LEU 5030.0036
SER 5040.0036
GLN 5050.0038
CYS 5060.0039
GLN 5070.0038
LEU 5080.0039
GLU 5090.0039
GLN 5100.0039
LEU 5110.0040
SER 5120.0042
PRO 5130.0042
THR 5140.0043
ALA 5150.0044
PHE 5160.0045
ASN 5170.0046
SER 5180.0045
LEU 5190.0046
SER 5200.0049
SER 5210.0050
LEU 5220.0051
GLN 5230.0052
VAL 5240.0051
LEU 5250.0047
ASN 5260.0047
MET 5270.0044
SER 5280.0045
HIS 5290.0046
ASN 5300.0043
ASN 5310.0041
PHE 5320.0040
PHE 5330.0035
SER 5340.0031
LEU 5350.0033
ASP 5360.0031
THR 5370.0036
PHE 5380.0036
PRO 5390.0041
TYR 5400.0045
LYS 5410.0045
CYS 5420.0050
LEU 5430.0052
ASN 5440.0057
SER 5450.0059
LEU 5460.0056
GLN 5470.0058
VAL 5480.0056
LEU 5490.0050
ASP 5500.0051
TYR 5510.0046
SER 5520.0051
LEU 5530.0053
ASN 5540.0049
HIS 5550.0045
ILE 5560.0040
MET 5570.0039
THR 5580.0029
SER 5590.0022
LYS 5600.0016
LYS 5610.0015
GLN 5620.0012
GLU 5630.0021
LEU 5640.0023
GLN 5650.0027
HIS 5660.0035
PHE 5670.0041
PRO 5680.0049
SER 5690.0053
SER 5700.0060
LEU 5710.0055
ALA 5720.0055
PHE 5730.0055
LEU 5740.0048
ASN 5750.0054
LEU 5760.0049
THR 5770.0056
GLN 5780.0062
ASN 5790.0056
ASP 5800.0057
PHE 5810.0049
ALA 5820.0058
CYS 5830.0062
THR 5840.0064
CYS 5850.0062
GLU 5860.0053
HIS 5870.0038
GLN 5880.0038
SER 5890.0022
PHE 5900.0019
LEU 5910.0033
GLN 5920.0026
TRP 5930.0017
ILE 5940.0032
LYS 5950.0031
ASP 5960.0019
GLN 5970.0030
ARG 5980.0040
GLN 5990.0046
LEU 6000.0047
LEU 6010.0051
VAL 6020.0064
GLU 6030.0065
VAL 6040.0065
GLU 6050.0066
ARG 6060.0062
MET 6070.0066
GLU 6080.0074
CYS 6090.0072
ALA 6100.0081
THR 6110.0081
PRO 6120.0093
SER 6130.0112
ASP 6140.0119
LYS 6150.0102
GLN 6160.0105
GLY 6170.0099
MET 6180.0088
PRO 6190.0075
VAL 6200.0059
LEU 6210.0051
SER 6220.0071
LEU 6230.0071
ASN 6240.0074
ILE 6250.0062
THR 6260.0079
CYS 6270.0141
GLU 10.0365
ALA 20.0361
ALA 30.0320
ALA 40.0161
LYS 50.0101
MET 60.0206
GLN 70.0100
ARG 80.0183
LEU 90.0309
VAL 100.0323
LEU 110.0282
LEU 120.0363
LEU 130.0357
ALA 140.0293
ILE 150.0344
SER 160.0283
LEU 170.0235
LEU 180.0219
LEU 190.0214
TYR 200.0168
GLN 210.0103
ASP 220.0117
LEU 230.0094
PRO 240.0065
VAL 250.0046
ARG 260.0030
SER 270.0037
GLU 280.0031
PHE 290.0026
GLU 300.0038
LEU 310.0042
ASP 320.0039
ARG 330.0038
ILE 340.0057
CYS 350.0073
GLY 360.0058
TYR 370.0063
GLY 380.0060
THR 390.0070
ALA 400.0062
ARG 410.0043
CYS 420.0073
ARG 430.0088
LYS 440.0134
LYS 450.0119
CYS 460.0058
ARG 470.0040
SER 480.0033
GLN 490.0018
GLU 500.0030
TYR 510.0061
ARG 520.0108
ILE 530.0137
GLY 540.0171
ARG 550.0184
CYS 560.0149
PRO 570.0169
ASN 580.0168
THR 590.0203
TYR 600.0161
ALA 610.0117
CYS 620.0095
CYS 630.0068
LEU 640.0064
ARG 650.0038
LYS 660.0022
TRP 670.0024
ASP 680.0023
GLU 690.0023
SER 700.0026
LEU 710.0020
LEU 720.0018
ASN 730.0017
ARG 740.0021
THR 750.0023
LYS 760.0013
PRO 770.0011
GLU 780.0010
ALA 790.0014
ALA 800.0021
ALA 810.0127
LYS 820.0134
LYS 830.0113
GLU 840.0121
MET 850.0106
ASN 860.0097
LEU 870.0057
SER 880.0072
VAL 890.0061
GLY 900.0101
LEU 910.0118
GLY 920.0186
GLY 930.0220
GLY 940.0220
SER 950.0158
ASN 960.0121
LEU 970.0087
SER 980.0098
VAL 990.0085
GLY 1000.0119
LEU 1010.0084
GLY 1020.0091
GLU 1030.0113
ILE 1040.0100
GLY 1050.0131
GLY 1060.0165
GLY 1070.0135
SER 1080.0121
LYS 1090.0076
LEU 1100.0073
LEU 1110.0083
ASP 1120.0103
ILE 1130.0087
ASN 1140.0134
LEU 1150.0129
GLY 1160.0200
ARG 1170.0261
GLY 1180.0145
GLY 1190.0237
GLY 1200.0307
SER 1210.0149
MET 1220.0115
VAL 1230.0095
ASP 1240.0067
LEU 1250.0044
THR 1260.0033
PHE 1270.0033
GLY 1280.0052
GLY 1290.0062
VAL 1300.0085
GLY 1310.0186
GLY 1320.0151
GLY 1330.0115
SER 1340.0067
THR 1350.0037
PHE 1360.0014
THR 1370.0035
PHE 1380.0031
PHE 1390.0058
PRO 1400.0060
LEU 1410.0090
VAL 1420.0147
ILE 1430.0104
GLY 1440.0138
GLY 1450.0167
GLY 1460.0166
SER 1470.0157
ASP 1480.0166
ALA 1490.0111
MET 1500.0070
TYR 1510.0025
LEU 1520.0028
GLY 1530.0044
PHE 1540.0051
ALA 1550.0072
ALA 1560.0059
GLY 1570.0035
GLY 1580.0035
GLY 1590.0102
SER 1600.0161
ALA 1610.0136
GLY 1620.0123
GLY 1630.0086
GLU 1640.0047
ASN 1650.0020
HIS 1660.0012
VAL 1670.0039
ALA 1680.0047
PHE 1690.0074
GLY 1700.0078
PRO 1710.0130
GLY 1720.0189
PRO 1730.0247
GLY 1740.0190
VAL 1750.0110
ASP 1760.0090
LEU 1770.0062
THR 1780.0058
PHE 1790.0057
GLY 1800.0077
GLY 1810.0095
VAL 1820.0112
GLN 1830.0110
PHE 1840.0106
ALA 1850.0131
MET 1860.0127
VAL 1870.0120
ASN 1880.0131
ASN 1890.0103
GLY 1900.0204
PRO 1910.0296
GLY 1920.0166
PRO 1930.0199
GLY 1940.0188
GLU 1950.0133
SER 1960.0225
PHE 1970.0160
THR 1980.0333
ALA 1990.0384
GLN 2000.0193
PRO 2010.0138
ALA 2020.0158
ASP 2030.0295
MET 2040.0459
GLN 2050.0622
ALA 2060.0292
GLY 2070.0274
ILE 2080.0477
LYS 2090.0459
GLY 2100.0694
PRO 2110.1014
GLY 2120.0367
PRO 2130.0830
GLY 2140.0990
GLY 2150.0288
SER 2160.0526
ILE 2170.0212
GLN 2180.0203
VAL 2190.0225
ILE 2200.0314
ASN 2210.0281
GLY 2220.0229
SER 2230.0207
THR 2240.0214
ILE 2250.0208
GLY 2260.0175
THR 2270.0207
GLY 2280.0218
SER 2290.0293
LYS 2300.0258
LYS 2310.0236
THR 2320.0230
ILE 2330.0228
LEU 2340.0231
ILE 2350.0231
TYR 2360.0211
SER 2370.0199
ILE 2380.0178
ILE 2390.0144
GLY 2400.0143
VAL 2410.0089
LYS 2420.0065
LYS 2430.0068
GLY 2440.0046
THR 2450.0028
LEU 2460.0087
ALA 2470.0097
TRP 2480.0117
ALA 2490.0138
ARG 2500.0166
THR 2510.0211
GLY 2520.0190
PHE 2530.0141
SER 2540.0125
PRO 2550.0099
ALA 2560.0075
LYS 2570.0086
LYS 2580.0040
LEU 2590.0071
ASN 2600.0116
ALA 2610.0123
GLY 2620.0102
VAL 2630.0107
VAL 2640.0112
ARG 2650.0112
VAL 2660.0089
PHE 2670.0075
PHE 2680.0058
LEU 2690.0060
ASN 2700.0090
GLN 2710.0054
LYS 2720.0052
LYS 2730.0062
ALA 2740.0049
LYS 2750.0027
ASP 2760.0042
VAL 2770.0049
LEU 2780.0034
ARG 2790.0025
LYS 2800.0042
THR 2810.0092
SER 2820.0073
ARG 2830.0071
PRO 2840.0055
MET 2850.0064
VAL 2860.0107
ASP 2870.0117
LEU 2880.0118
THR 2890.0134
PHE 2900.0114
GLY 2910.0164
GLY 2920.0146

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.