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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 55  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0677
GLU 270.0058
PRO 280.0060
CYS 290.0055
VAL 300.0060
GLU 310.0058
VAL 320.0057
VAL 330.0052
PRO 340.0055
ASN 350.0047
ILE 360.0039
THR 370.0040
TYR 380.0042
GLN 390.0045
CYS 400.0042
MET 410.0045
GLU 420.0050
LEU 430.0049
ASN 440.0048
PHE 450.0041
TYR 460.0039
LYS 470.0032
ILE 480.0029
PRO 490.0037
ASP 500.0036
ASN 510.0047
LEU 520.0042
PRO 530.0040
PHE 540.0033
SER 550.0031
THR 560.0030
LYS 570.0021
ASN 580.0023
LEU 590.0025
ASP 600.0030
LEU 610.0030
SER 620.0033
PHE 630.0039
ASN 640.0039
PRO 650.0041
LEU 660.0036
ARG 670.0042
HIS 680.0040
LEU 690.0034
GLY 700.0033
SER 710.0029
TYR 720.0020
SER 730.0023
PHE 740.0020
PHE 750.0017
SER 760.0019
PHE 770.0017
PRO 780.0015
GLU 790.0014
LEU 800.0015
GLN 810.0016
VAL 820.0015
LEU 830.0018
ASP 840.0021
LEU 850.0024
SER 860.0027
ARG 870.0032
CYS 880.0032
GLU 890.0040
ILE 900.0038
GLN 910.0046
THR 920.0044
ILE 930.0038
GLU 940.0038
ASP 950.0036
GLY 960.0029
ALA 970.0027
TYR 980.0023
GLN 990.0021
SER 1000.0015
LEU 1010.0016
SER 1020.0018
HIS 1030.0015
LEU 1040.0017
SER 1050.0020
THR 1060.0021
LEU 1070.0021
ILE 1080.0023
LEU 1090.0027
THR 1100.0028
GLY 1110.0031
ASN 1120.0033
PRO 1130.0040
ILE 1140.0042
GLN 1150.0049
SER 1160.0049
LEU 1170.0042
ALA 1180.0043
LEU 1190.0043
GLY 1200.0039
ALA 1210.0036
PHE 1220.0032
SER 1230.0029
GLY 1240.0024
LEU 1250.0026
SER 1260.0025
SER 1270.0024
LEU 1280.0024
GLN 1290.0025
LYS 1300.0026
LEU 1310.0026
VAL 1320.0028
ALA 1330.0030
VAL 1340.0033
GLU 1350.0034
THR 1360.0034
ASN 1370.0032
LEU 1380.0034
ALA 1390.0040
SER 1400.0041
LEU 1410.0039
GLU 1420.0043
ASN 1430.0041
PHE 1440.0037
PRO 1450.0037
ILE 1460.0035
GLY 1470.0036
HIS 1480.0036
LEU 1490.0031
LYS 1500.0031
THR 1510.0028
LEU 1520.0024
LYS 1530.0027
GLU 1540.0029
LEU 1550.0028
ASN 1560.0031
VAL 1570.0031
ALA 1580.0036
HIS 1590.0039
ASN 1600.0036
LEU 1610.0039
ILE 1620.0039
GLN 1630.0046
SER 1640.0048
PHE 1650.0048
LYS 1660.0049
LEU 1670.0043
PRO 1680.0044
GLU 1690.0048
TYR 1700.0043
PHE 1710.0039
SER 1720.0042
ASN 1730.0038
LEU 1740.0031
THR 1750.0032
ASN 1760.0027
LEU 1770.0022
GLU 1780.0028
HIS 1790.0031
LEU 1800.0032
ASP 1810.0035
LEU 1820.0038
SER 1830.0042
SER 1840.0046
ASN 1850.0044
LYS 1860.0048
ILE 1870.0053
GLN 1880.0059
SER 1890.0059
ILE 1900.0056
TYR 1910.0058
CYS 1920.0061
THR 1930.0058
ASP 1940.0050
LEU 1950.0049
ARG 1960.0053
VAL 1970.0044
LEU 1980.0042
HIS 1990.0051
GLN 2000.0050
MET 2010.0044
PRO 2020.0045
LEU 2030.0036
LEU 2040.0029
ASN 2050.0028
LEU 2060.0030
SER 2070.0033
LEU 2080.0037
ASP 2090.0042
LEU 2100.0049
SER 2110.0055
LEU 2120.0057
ASN 2130.0057
PRO 2140.0061
MET 2150.0062
ASN 2160.0067
PHE 2170.0063
ILE 2180.0060
GLN 2190.0064
PRO 2200.0068
GLY 2210.0064
ALA 2220.0056
PHE 2230.0051
LYS 2240.0058
GLU 2250.0052
ILE 2260.0042
ARG 2270.0037
LEU 2280.0035
HIS 2290.0035
LYS 2300.0041
LEU 2310.0045
THR 2320.0055
LEU 2330.0057
ARG 2340.0059
ASN 2350.0061
ASN 2360.0061
PHE 2370.0068
ASP 2380.0071
SER 2390.0071
LEU 2400.0068
ASN 2410.0068
VAL 2420.0069
MET 2430.0066
LYS 2440.0066
THR 2450.0066
CYS 2460.0064
ILE 2470.0060
GLN 2480.0064
GLY 2490.0058
LEU 2500.0054
ALA 2510.0059
GLY 2520.0056
LEU 2530.0046
GLU 2540.0044
VAL 2550.0044
HIS 2560.0046
ARG 2570.0051
LEU 2580.0051
VAL 2590.0051
LEU 2600.0054
GLY 2610.0057
GLU 2620.0061
PHE 2630.0063
ARG 2640.0062
ASN 2650.0064
GLU 2660.0064
GLY 2670.0071
ASN 2680.0068
LEU 2690.0066
GLU 2700.0067
LYS 2710.0063
PHE 2720.0056
ASP 2730.0052
LYS 2740.0046
SER 2750.0047
ALA 2760.0050
LEU 2770.0049
GLU 2780.0048
GLY 2790.0048
LEU 2800.0048
CYS 2810.0048
ASN 2820.0056
LEU 2830.0047
THR 2840.0047
ILE 2850.0050
GLU 2860.0055
GLU 2870.0058
PHE 2880.0052
ARG 2890.0049
LEU 2900.0046
ALA 2910.0047
TYR 2920.0054
LEU 2930.0052
ASP 2940.0060
TYR 2950.0054
TYR 2960.0052
LEU 2970.0043
ASP 2980.0048
GLY 2990.0041
ILE 3000.0035
ILE 3010.0039
ASP 3020.0043
LEU 3030.0040
PHE 3040.0040
ASN 3050.0044
CYS 3060.0044
LEU 3070.0048
THR 3080.0054
ASN 3090.0061
VAL 3100.0056
SER 3110.0061
SER 3120.0061
PHE 3130.0048
SER 3140.0042
LEU 3150.0034
VAL 3160.0038
SER 3170.0046
VAL 3180.0039
THR 3190.0042
ILE 3200.0037
GLU 3210.0048
ARG 3220.0054
VAL 3230.0046
LYS 3240.0060
ASP 3250.0049
PHE 3260.0046
SER 3270.0065
TYR 3280.0065
ASN 3290.0072
PHE 3300.0063
GLY 3310.0074
TRP 3320.0068
GLN 3330.0077
HIS 3340.0068
LEU 3350.0054
GLU 3360.0046
LEU 3370.0031
VAL 3380.0041
ASN 3390.0048
CYS 3400.0037
LYS 3410.0045
PHE 3420.0041
GLY 3430.0062
GLN 3440.0059
PHE 3450.0045
PRO 3460.0043
THR 3470.0057
LEU 3480.0055
LYS 3490.0076
LEU 3500.0080
LYS 3510.0102
SER 3520.0090
LEU 3530.0084
LYS 3540.0089
ARG 3550.0083
LEU 3560.0075
THR 3570.0066
PHE 3580.0035
THR 3590.0045
SER 3600.0054
ASN 3610.0040
LYS 3620.0064
GLY 3630.0063
GLY 3640.0064
ASN 3650.0050
ALA 3660.0064
PHE 3670.0049
SER 3680.0069
GLU 3690.0086
VAL 3700.0076
ASP 3710.0098
LEU 3720.0103
PRO 3730.0111
SER 3740.0112
LEU 3750.0114
GLU 3760.0124
PHE 3770.0128
LEU 3780.0096
ASP 3790.0078
LEU 3800.0046
SER 3810.0049
ARG 3820.0066
ASN 3830.0045
GLY 3840.0059
LEU 3850.0039
SER 3860.0067
PHE 3870.0076
LYS 3880.0124
GLY 3890.0149
CYS 3900.0115
CYS 3910.0132
SER 3920.0144
GLN 3930.0157
SER 3940.0148
ASP 3950.0113
PHE 3960.0107
GLY 3970.0133
THR 3980.0146
ILE 3990.0168
SER 4000.0169
LEU 4010.0165
LYS 4020.0187
TYR 4030.0154
LEU 4040.0115
ASP 4050.0086
LEU 4060.0047
SER 4070.0054
PHE 4080.0066
ASN 4090.0046
GLY 4100.0070
VAL 4110.0083
ILE 4120.0080
THR 4130.0120
MET 4140.0127
SER 4150.0170
SER 4160.0179
ASN 4170.0180
PHE 4180.0172
LEU 4190.0217
GLY 4200.0232
LEU 4210.0198
GLU 4220.0237
GLN 4230.0240
LEU 4240.0198
GLU 4250.0205
HIS 4260.0167
LEU 4270.0123
ASP 4280.0091
PHE 4290.0050
GLN 4300.0059
HIS 4310.0061
SER 4320.0042
ASN 4330.0069
LEU 4340.0072
LYS 4350.0113
GLN 4360.0145
MET 4370.0124
SER 4380.0145
GLU 4390.0186
PHE 4400.0187
SER 4410.0171
VAL 4420.0156
PHE 4430.0157
LEU 4440.0202
SER 4450.0227
LEU 4460.0203
ARG 4470.0244
ASN 4480.0244
LEU 4490.0198
ILE 4500.0197
TYR 4510.0159
LEU 4520.0116
ASP 4530.0088
ILE 4540.0057
SER 4550.0056
HIS 4560.0059
THR 4570.0049
HIS 4580.0076
THR 4590.0076
ARG 4600.0099
VAL 4610.0094
ALA 4620.0132
PHE 4630.0138
ASN 4640.0123
GLY 4650.0144
ILE 4660.0123
PHE 4670.0131
ASN 4680.0168
GLY 4690.0193
LEU 4700.0171
SER 4710.0194
SER 4720.0203
LEU 4730.0164
GLU 4740.0159
VAL 4750.0132
LEU 4760.0097
LYS 4770.0080
MET 4780.0059
ALA 4790.0062
GLY 4800.0066
ASN 4810.0063
SER 4820.0093
PHE 4830.0091
GLN 4840.0110
GLU 4850.0120
ASN 4860.0104
PHE 4870.0102
LEU 4880.0083
PRO 4890.0094
ASP 4900.0087
ILE 4910.0095
PHE 4920.0093
THR 4930.0107
GLU 4940.0133
LEU 4950.0116
ARG 4960.0116
ASN 4970.0134
LEU 4980.0106
THR 4990.0109
PHE 5000.0092
LEU 5010.0066
ASP 5020.0066
LEU 5030.0061
SER 5040.0066
GLN 5050.0070
CYS 5060.0068
GLN 5070.0093
LEU 5080.0093
GLU 5090.0102
GLN 5100.0100
LEU 5110.0091
SER 5120.0118
PRO 5130.0111
THR 5140.0094
ALA 5150.0085
PHE 5160.0060
ASN 5170.0067
SER 5180.0065
LEU 5190.0050
SER 5200.0041
SER 5210.0059
LEU 5220.0043
GLN 5230.0053
VAL 5240.0048
LEU 5250.0045
ASN 5260.0047
MET 5270.0064
SER 5280.0061
HIS 5290.0066
ASN 5300.0076
ASN 5310.0087
PHE 5320.0099
PHE 5330.0103
SER 5340.0105
LEU 5350.0099
ASP 5360.0119
THR 5370.0119
PHE 5380.0140
PRO 5390.0117
TYR 5400.0094
LYS 5410.0120
CYS 5420.0079
LEU 5430.0059
ASN 5440.0061
SER 5450.0046
LEU 5460.0046
GLN 5470.0051
VAL 5480.0036
LEU 5490.0045
ASP 5500.0039
TYR 5510.0058
SER 5520.0045
LEU 5530.0051
ASN 5540.0065
HIS 5550.0071
ILE 5560.0067
MET 5570.0069
THR 5580.0088
SER 5590.0114
LYS 5600.0153
LYS 5610.0177
GLN 5620.0182
GLU 5630.0184
LEU 5640.0148
GLN 5650.0174
HIS 5660.0166
PHE 5670.0119
PRO 5680.0108
SER 5690.0121
SER 5700.0096
LEU 5710.0085
ALA 5720.0077
PHE 5730.0058
LEU 5740.0052
ASN 5750.0039
LEU 5760.0042
THR 5770.0045
GLN 5780.0050
ASN 5790.0048
ASP 5800.0064
PHE 5810.0047
ALA 5820.0075
CYS 5830.0078
THR 5840.0072
CYS 5850.0047
GLU 5860.0066
HIS 5870.0059
GLN 5880.0063
SER 5890.0106
PHE 5900.0091
LEU 5910.0074
GLN 5920.0109
TRP 5930.0122
ILE 5940.0101
LYS 5950.0135
ASP 5960.0166
GLN 5970.0131
ARG 5980.0124
GLN 5990.0143
LEU 6000.0110
LEU 6010.0074
VAL 6020.0101
GLU 6030.0099
VAL 6040.0114
GLU 6050.0123
ARG 6060.0090
MET 6070.0089
GLU 6080.0113
CYS 6090.0112
ALA 6100.0131
THR 6110.0143
PRO 6120.0181
SER 6130.0248
ASP 6140.0261
LYS 6150.0205
GLN 6160.0204
GLY 6170.0191
MET 6180.0182
PRO 6190.0154
VAL 6200.0111
LEU 6210.0151
SER 6220.0194
LEU 6230.0158
ASN 6240.0170
ILE 6250.0136
THR 6260.0151
CYS 6270.0143
GLU 10.0677
ALA 20.0568
ALA 30.0522
ALA 40.0367
LYS 50.0014
MET 60.0211
GLN 70.0097
ARG 80.0374
LEU 90.0504
VAL 100.0509
LEU 110.0487
LEU 120.0625
LEU 130.0600
ALA 140.0492
ILE 150.0595
SER 160.0487
LEU 170.0409
LEU 180.0346
LEU 190.0326
TYR 200.0268
GLN 210.0124
ASP 220.0125
LEU 230.0078
PRO 240.0046
VAL 250.0070
ARG 260.0036
SER 270.0048
GLU 280.0052
PHE 290.0068
GLU 300.0069
LEU 310.0069
ASP 320.0067
ARG 330.0074
ILE 340.0075
CYS 350.0074
GLY 360.0080
TYR 370.0092
GLY 380.0080
THR 390.0090
ALA 400.0080
ARG 410.0074
CYS 420.0071
ARG 430.0066
LYS 440.0063
LYS 450.0066
CYS 460.0067
ARG 470.0055
SER 480.0050
GLN 490.0052
GLU 500.0065
TYR 510.0077
ARG 520.0083
ILE 530.0092
GLY 540.0095
ARG 550.0093
CYS 560.0081
PRO 570.0076
ASN 580.0069
THR 590.0073
TYR 600.0075
ALA 610.0080
CYS 620.0085
CYS 630.0075
LEU 640.0080
ARG 650.0069
LYS 660.0058
TRP 670.0056
ASP 680.0044
GLU 690.0032
SER 700.0034
LEU 710.0042
LEU 720.0035
ASN 730.0028
ARG 740.0040
THR 750.0041
LYS 760.0028
PRO 770.0040
GLU 780.0049
ALA 790.0057
ALA 800.0057
ALA 810.0054
LYS 820.0051
LYS 830.0048
GLU 840.0051
MET 850.0047
ASN 860.0036
LEU 870.0026
SER 880.0009
VAL 890.0024
GLY 900.0031
LEU 910.0062
GLY 920.0092
GLY 930.0115
GLY 940.0092
SER 950.0067
ASN 960.0022
LEU 970.0026
SER 980.0020
VAL 990.0041
GLY 1000.0054
LEU 1010.0057
GLY 1020.0061
GLU 1030.0051
ILE 1040.0060
GLY 1050.0060
GLY 1060.0098
GLY 1070.0082
SER 1080.0069
LYS 1090.0049
LEU 1100.0048
LEU 1110.0050
ASP 1120.0053
ILE 1130.0039
ASN 1140.0055
LEU 1150.0055
GLY 1160.0081
ARG 1170.0100
GLY 1180.0093
GLY 1190.0110
GLY 1200.0108
SER 1210.0080
MET 1220.0063
VAL 1230.0048
ASP 1240.0028
LEU 1250.0020
THR 1260.0010
PHE 1270.0020
GLY 1280.0029
GLY 1290.0034
VAL 1300.0050
GLY 1310.0057
GLY 1320.0072
GLY 1330.0073
SER 1340.0074
THR 1350.0075
PHE 1360.0056
THR 1370.0060
PHE 1380.0054
PHE 1390.0061
PRO 1400.0063
LEU 1410.0058
VAL 1420.0078
ILE 1430.0078
GLY 1440.0098
GLY 1450.0112
GLY 1460.0065
SER 1470.0047
ASP 1480.0027
ALA 1490.0030
MET 1500.0028
TYR 1510.0035
LEU 1520.0029
GLY 1530.0027
PHE 1540.0039
ALA 1550.0043
ALA 1560.0073
GLY 1570.0100
GLY 1580.0120
GLY 1590.0113
SER 1600.0097
ALA 1610.0049
GLY 1620.0025
GLY 1630.0017
GLU 1640.0013
ASN 1650.0021
HIS 1660.0016
VAL 1670.0025
ALA 1680.0031
PHE 1690.0044
GLY 1700.0050
PRO 1710.0107
GLY 1720.0099
PRO 1730.0088
GLY 1740.0057
VAL 1750.0041
ASP 1760.0033
LEU 1770.0030
THR 1780.0026
PHE 1790.0022
GLY 1800.0018
GLY 1810.0033
VAL 1820.0030
GLN 1830.0027
PHE 1840.0025
ALA 1850.0022
MET 1860.0061
VAL 1870.0103
ASN 1880.0094
ASN 1890.0173
GLY 1900.0152
PRO 1910.0115
GLY 1920.0144
PRO 1930.0146
GLY 1940.0123
GLU 1950.0070
SER 1960.0158
PHE 1970.0093
THR 1980.0171
ALA 1990.0183
GLN 2000.0086
PRO 2010.0053
ALA 2020.0077
ASP 2030.0148
MET 2040.0210
GLN 2050.0280
ALA 2060.0110
GLY 2070.0101
ILE 2080.0199
LYS 2090.0208
GLY 2100.0308
PRO 2110.0445
GLY 2120.0165
PRO 2130.0403
GLY 2140.0398
GLY 2150.0128
SER 2160.0274
ILE 2170.0121
GLN 2180.0118
VAL 2190.0026
ILE 2200.0153
ASN 2210.0118
GLY 2220.0104
SER 2230.0136
THR 2240.0177
ILE 2250.0169
GLY 2260.0154
THR 2270.0172
GLY 2280.0155
SER 2290.0228
LYS 2300.0158
LYS 2310.0138
THR 2320.0072
ILE 2330.0032
LEU 2340.0057
ILE 2350.0099
TYR 2360.0167
SER 2370.0196
ILE 2380.0210
ILE 2390.0169
GLY 2400.0202
VAL 2410.0202
LYS 2420.0147
LYS 2430.0159
GLY 2440.0183
THR 2450.0163
LEU 2460.0168
ALA 2470.0090
TRP 2480.0065
ALA 2490.0044
ARG 2500.0061
THR 2510.0138
GLY 2520.0101
PHE 2530.0089
SER 2540.0106
PRO 2550.0101
ALA 2560.0128
LYS 2570.0130
LYS 2580.0127
LEU 2590.0133
ASN 2600.0234
ALA 2610.0339
GLY 2620.0232
VAL 2630.0234
VAL 2640.0163
ARG 2650.0163
VAL 2660.0138
PHE 2670.0141
PHE 2680.0140
LEU 2690.0153
ASN 2700.0185
GLN 2710.0153
LYS 2720.0164
LYS 2730.0177
ALA 2740.0153
LYS 2750.0135
ASP 2760.0136
VAL 2770.0113
LEU 2780.0069
ARG 2790.0075
LYS 2800.0110
THR 2810.0077
SER 2820.0036
ARG 2830.0020
PRO 2840.0037
MET 2850.0084
VAL 2860.0028
ASP 2870.0052
LEU 2880.0071
THR 2890.0121
PHE 2900.0139
GLY 2910.0112
GLY 2920.0220

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.