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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 56  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0830
GLU 270.0082
PRO 280.0078
CYS 290.0073
VAL 300.0090
GLU 310.0096
VAL 320.0100
VAL 330.0097
PRO 340.0099
ASN 350.0082
ILE 360.0067
THR 370.0065
TYR 380.0060
GLN 390.0062
CYS 400.0048
MET 410.0057
GLU 420.0060
LEU 430.0053
ASN 440.0043
PHE 450.0027
TYR 460.0017
LYS 470.0015
ILE 480.0015
PRO 490.0034
ASP 500.0051
ASN 510.0068
LEU 520.0062
PRO 530.0066
PHE 540.0057
SER 550.0053
THR 560.0044
LYS 570.0028
ASN 580.0033
LEU 590.0028
ASP 600.0037
LEU 610.0030
SER 620.0038
PHE 630.0045
ASN 640.0037
PRO 650.0037
LEU 660.0030
ARG 670.0035
HIS 680.0031
LEU 690.0027
GLY 700.0028
SER 710.0032
TYR 720.0033
SER 730.0021
PHE 740.0018
PHE 750.0031
SER 760.0032
PHE 770.0027
PRO 780.0033
GLU 790.0024
LEU 800.0012
GLN 810.0014
VAL 820.0024
LEU 830.0025
ASP 840.0032
LEU 850.0033
SER 860.0042
ARG 870.0038
CYS 880.0037
GLU 890.0038
ILE 900.0038
GLN 910.0038
THR 920.0039
ILE 930.0035
GLU 940.0036
ASP 950.0039
GLY 960.0034
ALA 970.0030
TYR 980.0026
GLN 990.0033
SER 1000.0027
LEU 1010.0020
SER 1020.0028
HIS 1030.0020
LEU 1040.0021
SER 1050.0026
THR 1060.0030
LEU 1070.0034
ILE 1080.0034
LEU 1090.0035
THR 1100.0036
GLY 1110.0036
ASN 1120.0037
PRO 1130.0040
ILE 1140.0039
GLN 1150.0041
SER 1160.0039
LEU 1170.0039
ALA 1180.0038
LEU 1190.0038
GLY 1200.0035
ALA 1210.0034
PHE 1220.0034
SER 1230.0035
GLY 1240.0030
LEU 1250.0029
SER 1260.0031
SER 1270.0032
LEU 1280.0032
GLN 1290.0035
LYS 1300.0034
LEU 1310.0033
VAL 1320.0033
ALA 1330.0030
VAL 1340.0027
GLU 1350.0025
THR 1360.0025
ASN 1370.0021
LEU 1380.0020
ALA 1390.0015
SER 1400.0015
LEU 1410.0018
GLU 1420.0022
ASN 1430.0023
PHE 1440.0026
PRO 1450.0030
ILE 1460.0032
GLY 1470.0029
HIS 1480.0033
LEU 1490.0034
LYS 1500.0035
THR 1510.0037
LEU 1520.0033
LYS 1530.0033
GLU 1540.0031
LEU 1550.0029
ASN 1560.0027
VAL 1570.0020
ALA 1580.0019
HIS 1590.0018
ASN 1600.0013
LEU 1610.0011
ILE 1620.0014
GLN 1630.0017
SER 1640.0017
PHE 1650.0015
LYS 1660.0018
LEU 1670.0020
PRO 1680.0023
GLU 1690.0027
TYR 1700.0028
PHE 1710.0025
SER 1720.0031
ASN 1730.0033
LEU 1740.0031
THR 1750.0034
ASN 1760.0034
LEU 1770.0026
GLU 1780.0026
HIS 1790.0023
LEU 1800.0019
ASP 1810.0017
LEU 1820.0009
SER 1830.0014
SER 1840.0018
ASN 1850.0015
LYS 1860.0019
ILE 1870.0024
GLN 1880.0031
SER 1890.0030
ILE 1900.0024
TYR 1910.0028
CYS 1920.0027
THR 1930.0030
ASP 1940.0024
LEU 1950.0021
ARG 1960.0027
VAL 1970.0025
LEU 1980.0021
HIS 1990.0025
GLN 2000.0031
MET 2010.0029
PRO 2020.0027
LEU 2030.0029
LEU 2040.0024
ASN 2050.0021
LEU 2060.0015
SER 2070.0013
LEU 2080.0009
ASP 2090.0013
LEU 2100.0016
SER 2110.0023
LEU 2120.0029
ASN 2130.0028
PRO 2140.0034
MET 2150.0030
ASN 2160.0036
PHE 2170.0034
ILE 2180.0028
GLN 2190.0030
PRO 2200.0028
GLY 2210.0025
ALA 2220.0024
PHE 2230.0019
LYS 2240.0020
GLU 2250.0018
ILE 2260.0016
ARG 2270.0010
LEU 2280.0009
HIS 2290.0009
LYS 2300.0011
LEU 2310.0014
THR 2320.0020
LEU 2330.0022
ARG 2340.0026
ASN 2350.0031
ASN 2360.0030
PHE 2370.0033
ASP 2380.0038
SER 2390.0035
LEU 2400.0029
ASN 2410.0029
VAL 2420.0033
MET 2430.0029
LYS 2440.0026
THR 2450.0028
CYS 2460.0028
ILE 2470.0023
GLN 2480.0023
GLY 2490.0025
LEU 2500.0020
ALA 2510.0018
GLY 2520.0016
LEU 2530.0015
GLU 2540.0011
VAL 2550.0011
HIS 2560.0010
ARG 2570.0014
LEU 2580.0015
VAL 2590.0019
LEU 2600.0021
GLY 2610.0025
GLU 2620.0030
PHE 2630.0036
ARG 2640.0039
ASN 2650.0044
GLU 2660.0041
GLY 2670.0042
ASN 2680.0036
LEU 2690.0031
GLU 2700.0031
LYS 2710.0025
PHE 2720.0023
ASP 2730.0019
LYS 2740.0015
SER 2750.0014
ALA 2760.0018
LEU 2770.0018
GLU 2780.0015
GLY 2790.0016
LEU 2800.0016
CYS 2810.0013
ASN 2820.0015
LEU 2830.0015
THR 2840.0013
ILE 2850.0013
GLU 2860.0012
GLU 2870.0014
PHE 2880.0015
ARG 2890.0019
LEU 2900.0021
ALA 2910.0025
TYR 2920.0031
LEU 2930.0027
ASP 2940.0030
TYR 2950.0025
TYR 2960.0026
LEU 2970.0025
ASP 2980.0027
GLY 2990.0025
ILE 3000.0022
ILE 3010.0022
ASP 3020.0019
LEU 3030.0018
PHE 3040.0017
ASN 3050.0017
CYS 3060.0016
LEU 3070.0016
THR 3080.0017
ASN 3090.0017
VAL 3100.0016
SER 3110.0016
SER 3120.0015
PHE 3130.0016
SER 3140.0019
LEU 3150.0022
VAL 3160.0025
SER 3170.0032
VAL 3180.0029
THR 3190.0030
ILE 3200.0029
GLU 3210.0032
ARG 3220.0032
VAL 3230.0030
LYS 3240.0030
ASP 3250.0026
PHE 3260.0024
SER 3270.0025
TYR 3280.0023
ASN 3290.0021
PHE 3300.0019
GLY 3310.0019
TRP 3320.0017
GLN 3330.0017
HIS 3340.0017
LEU 3350.0017
GLU 3360.0019
LEU 3370.0025
VAL 3380.0029
ASN 3390.0033
CYS 3400.0031
LYS 3410.0034
PHE 3420.0034
GLY 3430.0037
GLN 3440.0036
PHE 3450.0032
PRO 3460.0029
THR 3470.0027
LEU 3480.0023
LYS 3490.0022
LEU 3500.0020
LYS 3510.0019
SER 3520.0019
LEU 3530.0017
LYS 3540.0018
ARG 3550.0018
LEU 3560.0018
THR 3570.0023
PHE 3580.0026
THR 3590.0030
SER 3600.0035
ASN 3610.0035
LYS 3620.0039
GLY 3630.0039
GLY 3640.0038
ASN 3650.0036
ALA 3660.0036
PHE 3670.0032
SER 3680.0029
GLU 3690.0027
VAL 3700.0024
ASP 3710.0022
LEU 3720.0022
PRO 3730.0021
SER 3740.0020
LEU 3750.0021
GLU 3760.0023
PHE 3770.0023
LEU 3780.0024
ASP 3790.0026
LEU 3800.0027
SER 3810.0030
ARG 3820.0032
ASN 3830.0033
GLY 3840.0032
LEU 3850.0032
SER 3860.0031
PHE 3870.0028
LYS 3880.0029
GLY 3890.0030
CYS 3900.0028
CYS 3910.0029
SER 3920.0028
GLN 3930.0029
SER 3940.0028
ASP 3950.0026
PHE 3960.0027
GLY 3970.0029
THR 3980.0027
ILE 3990.0026
SER 4000.0026
LEU 4010.0027
LYS 4020.0028
TYR 4030.0027
LEU 4040.0027
ASP 4050.0027
LEU 4060.0027
SER 4070.0028
PHE 4080.0029
ASN 4090.0029
GLY 4100.0027
VAL 4110.0026
ILE 4120.0026
THR 4130.0027
MET 4140.0027
SER 4150.0031
SER 4160.0031
ASN 4170.0030
PHE 4180.0029
LEU 4190.0033
GLY 4200.0034
LEU 4210.0030
GLU 4220.0030
GLN 4230.0030
LEU 4240.0027
GLU 4250.0026
HIS 4260.0027
LEU 4270.0028
ASP 4280.0026
PHE 4290.0025
GLN 4300.0024
HIS 4310.0023
SER 4320.0024
ASN 4330.0022
LEU 4340.0022
LYS 4350.0024
GLN 4360.0025
MET 4370.0029
SER 4380.0033
GLU 4390.0036
PHE 4400.0035
SER 4410.0032
VAL 4420.0029
PHE 4430.0028
LEU 4440.0030
SER 4450.0031
LEU 4460.0028
ARG 4470.0027
ASN 4480.0026
LEU 4490.0026
ILE 4500.0028
TYR 4510.0030
LEU 4520.0026
ASP 4530.0026
ILE 4540.0025
SER 4550.0026
HIS 4560.0026
THR 4570.0024
HIS 4580.0026
THR 4590.0027
ARG 4600.0031
VAL 4610.0031
ALA 4620.0040
PHE 4630.0039
ASN 4640.0038
GLY 4650.0035
ILE 4660.0032
PHE 4670.0032
ASN 4680.0032
GLY 4690.0030
LEU 4700.0029
SER 4710.0030
SER 4720.0029
LEU 4730.0030
GLU 4740.0034
VAL 4750.0035
LEU 4760.0034
LYS 4770.0032
MET 4780.0034
ALA 4790.0037
GLY 4800.0039
ASN 4810.0038
SER 4820.0045
PHE 4830.0047
GLN 4840.0052
GLU 4850.0059
ASN 4860.0055
PHE 4870.0049
LEU 4880.0046
PRO 4890.0045
ASP 4900.0043
ILE 4910.0042
PHE 4920.0039
THR 4930.0038
GLU 4940.0036
LEU 4950.0036
ARG 4960.0036
ASN 4970.0037
LEU 4980.0038
THR 4990.0039
PHE 5000.0040
LEU 5010.0041
ASP 5020.0042
LEU 5030.0044
SER 5040.0046
GLN 5050.0048
CYS 5060.0048
GLN 5070.0053
LEU 5080.0050
GLU 5090.0050
GLN 5100.0048
LEU 5110.0045
SER 5120.0045
PRO 5130.0041
THR 5140.0044
ALA 5150.0046
PHE 5160.0042
ASN 5170.0041
SER 5180.0044
LEU 5190.0042
SER 5200.0041
SER 5210.0041
LEU 5220.0042
GLN 5230.0040
VAL 5240.0041
LEU 5250.0043
ASN 5260.0045
MET 5270.0046
SER 5280.0049
HIS 5290.0054
ASN 5300.0053
ASN 5310.0053
PHE 5320.0047
PHE 5330.0040
SER 5340.0032
LEU 5350.0029
ASP 5360.0034
THR 5370.0028
PHE 5380.0037
PRO 5390.0044
TYR 5400.0037
LYS 5410.0036
CYS 5420.0041
LEU 5430.0039
ASN 5440.0038
SER 5450.0037
LEU 5460.0035
GLN 5470.0032
VAL 5480.0036
LEU 5490.0036
ASP 5500.0042
TYR 5510.0040
SER 5520.0046
LEU 5530.0054
ASN 5540.0049
HIS 5550.0043
ILE 5560.0031
MET 5570.0021
THR 5580.0021
SER 5590.0026
LYS 5600.0041
LYS 5610.0045
GLN 5620.0046
GLU 5630.0042
LEU 5640.0026
GLN 5650.0027
HIS 5660.0027
PHE 5670.0022
PRO 5680.0024
SER 5690.0020
SER 5700.0020
LEU 5710.0019
ALA 5720.0027
PHE 5730.0034
LEU 5740.0028
ASN 5750.0038
LEU 5760.0032
THR 5770.0046
GLN 5780.0051
ASN 5790.0037
ASP 5800.0033
PHE 5810.0017
ALA 5820.0013
CYS 5830.0026
THR 5840.0046
CYS 5850.0073
GLU 5860.0074
HIS 5870.0049
GLN 5880.0058
SER 5890.0058
PHE 5900.0032
LEU 5910.0037
GLN 5920.0055
TRP 5930.0040
ILE 5940.0033
LYS 5950.0056
ASP 5960.0055
GLN 5970.0037
ARG 5980.0048
GLN 5990.0051
LEU 6000.0035
LEU 6010.0041
VAL 6020.0052
GLU 6030.0056
VAL 6040.0051
GLU 6050.0057
ARG 6060.0052
MET 6070.0048
GLU 6080.0047
CYS 6090.0030
ALA 6100.0028
THR 6110.0014
PRO 6120.0009
SER 6130.0015
ASP 6140.0036
LYS 6150.0040
GLN 6160.0038
GLY 6170.0061
MET 6180.0064
PRO 6190.0063
VAL 6200.0045
LEU 6210.0062
SER 6220.0090
LEU 6230.0076
ASN 6240.0095
ILE 6250.0093
THR 6260.0117
CYS 6270.0135
GLU 10.0091
ALA 20.0074
ALA 30.0077
ALA 40.0045
LYS 50.0004
MET 60.0042
GLN 70.0018
ARG 80.0046
LEU 90.0074
VAL 100.0079
LEU 110.0068
LEU 120.0086
LEU 130.0085
ALA 140.0068
ILE 150.0077
SER 160.0059
LEU 170.0053
LEU 180.0048
LEU 190.0042
TYR 200.0031
GLN 210.0023
ASP 220.0022
LEU 230.0021
PRO 240.0025
VAL 250.0028
ARG 260.0032
SER 270.0026
GLU 280.0028
PHE 290.0026
GLU 300.0020
LEU 310.0019
ASP 320.0018
ARG 330.0013
ILE 340.0011
CYS 350.0012
GLY 360.0007
TYR 370.0004
GLY 380.0006
THR 390.0007
ALA 400.0013
ARG 410.0011
CYS 420.0009
ARG 430.0011
LYS 440.0015
LYS 450.0020
CYS 460.0026
ARG 470.0029
SER 480.0036
GLN 490.0035
GLU 500.0031
TYR 510.0031
ARG 520.0022
ILE 530.0024
GLY 540.0018
ARG 550.0013
CYS 560.0015
PRO 570.0022
ASN 580.0021
THR 590.0016
TYR 600.0011
ALA 610.0010
CYS 620.0012
CYS 630.0017
LEU 640.0021
ARG 650.0026
LYS 660.0040
TRP 670.0039
ASP 680.0036
GLU 690.0037
SER 700.0034
LEU 710.0035
LEU 720.0044
ASN 730.0039
ARG 740.0030
THR 750.0039
LYS 760.0067
PRO 770.0076
GLU 780.0061
ALA 790.0096
ALA 800.0118
ALA 810.0419
LYS 820.0366
LYS 830.0310
GLU 840.0368
MET 850.0278
ASN 860.0260
LEU 870.0146
SER 880.0155
VAL 890.0124
GLY 900.0248
LEU 910.0366
GLY 920.0614
GLY 930.0830
GLY 940.0740
SER 950.0515
ASN 960.0269
LEU 970.0119
SER 980.0126
VAL 990.0151
GLY 1000.0303
LEU 1010.0315
GLY 1020.0407
GLU 1030.0407
ILE 1040.0463
GLY 1050.0483
GLY 1060.0473
GLY 1070.0406
SER 1080.0344
LYS 1090.0269
LEU 1100.0248
LEU 1110.0228
ASP 1120.0233
ILE 1130.0162
ASN 1140.0250
LEU 1150.0255
GLY 1160.0301
ARG 1170.0439
GLY 1180.0346
GLY 1190.0538
GLY 1200.0651
SER 1210.0300
MET 1220.0190
VAL 1230.0175
ASP 1240.0106
LEU 1250.0067
THR 1260.0048
PHE 1270.0094
GLY 1280.0122
GLY 1290.0156
VAL 1300.0195
GLY 1310.0291
GLY 1320.0298
GLY 1330.0250
SER 1340.0251
THR 1350.0210
PHE 1360.0171
THR 1370.0190
PHE 1380.0162
PHE 1390.0205
PRO 1400.0204
LEU 1410.0247
VAL 1420.0304
ILE 1430.0294
GLY 1440.0366
GLY 1450.0360
GLY 1460.0144
SER 1470.0118
ASP 1480.0159
ALA 1490.0130
MET 1500.0120
TYR 1510.0121
LEU 1520.0132
GLY 1530.0158
PHE 1540.0177
ALA 1550.0208
ALA 1560.0284
GLY 1570.0314
GLY 1580.0355
GLY 1590.0287
SER 1600.0231
ALA 1610.0073
GLY 1620.0081
GLY 1630.0062
GLU 1640.0042
ASN 1650.0032
HIS 1660.0046
VAL 1670.0093
ALA 1680.0100
PHE 1690.0147
GLY 1700.0160
PRO 1710.0470
GLY 1720.0649
PRO 1730.0769
GLY 1740.0593
VAL 1750.0324
ASP 1760.0239
LEU 1770.0171
THR 1780.0167
PHE 1790.0129
GLY 1800.0176
GLY 1810.0238
VAL 1820.0252
GLN 1830.0258
PHE 1840.0245
ALA 1850.0292
MET 1860.0308
VAL 1870.0423
ASN 1880.0262
ASN 1890.0448
GLY 1900.0379
PRO 1910.0779
GLY 1920.0616
PRO 1930.0221
GLY 1940.0342
GLU 1950.0394
SER 1960.0393
PHE 1970.0258
THR 1980.0158
ALA 1990.0072
GLN 2000.0100
PRO 2010.0070
ALA 2020.0131
ASP 2030.0192
MET 2040.0162
GLN 2050.0089
ALA 2060.0154
GLY 2070.0132
ILE 2080.0145
LYS 2090.0149
GLY 2100.0232
PRO 2110.0198
GLY 2120.0212
PRO 2130.0239
GLY 2140.0165
GLY 2150.0283
SER 2160.0293
ILE 2170.0262
GLN 2180.0189
VAL 2190.0235
ILE 2200.0207
ASN 2210.0154
GLY 2220.0135
SER 2230.0102
THR 2240.0046
ILE 2250.0060
GLY 2260.0160
THR 2270.0146
GLY 2280.0085
SER 2290.0074
LYS 2300.0065
LYS 2310.0073
THR 2320.0085
ILE 2330.0101
LEU 2340.0120
ILE 2350.0133
TYR 2360.0131
SER 2370.0120
ILE 2380.0097
ILE 2390.0081
GLY 2400.0066
VAL 2410.0053
LYS 2420.0038
LYS 2430.0034
GLY 2440.0027
THR 2450.0031
LEU 2460.0071
ALA 2470.0069
TRP 2480.0087
ALA 2490.0087
ARG 2500.0108
THR 2510.0177
GLY 2520.0151
PHE 2530.0082
SER 2540.0115
PRO 2550.0143
ALA 2560.0216
LYS 2570.0269
LYS 2580.0273
LEU 2590.0293
ASN 2600.0337
ALA 2610.0371
GLY 2620.0244
VAL 2630.0219
VAL 2640.0132
ARG 2650.0159
VAL 2660.0238
PHE 2670.0155
PHE 2680.0138
LEU 2690.0043
ASN 2700.0034
GLN 2710.0020
LYS 2720.0016
LYS 2730.0024
ALA 2740.0030
LYS 2750.0033
ASP 2760.0040
VAL 2770.0045
LEU 2780.0049
ARG 2790.0047
LYS 2800.0046
THR 2810.0061
SER 2820.0032
ARG 2830.0029
PRO 2840.0024
MET 2850.0051
VAL 2860.0079
ASP 2870.0065
LEU 2880.0052
THR 2890.0053
PHE 2900.0051
GLY 2910.0066
GLY 2920.0092

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.