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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 57  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0399
GLU 270.0250
PRO 280.0236
CYS 290.0189
VAL 300.0240
GLU 310.0250
VAL 320.0276
VAL 330.0256
PRO 340.0244
ASN 350.0168
ILE 360.0136
THR 370.0154
TYR 380.0130
GLN 390.0142
CYS 400.0089
MET 410.0107
GLU 420.0100
LEU 430.0089
ASN 440.0046
PHE 450.0048
TYR 460.0077
LYS 470.0114
ILE 480.0089
PRO 490.0105
ASP 500.0174
ASN 510.0205
LEU 520.0142
PRO 530.0130
PHE 540.0104
SER 550.0052
THR 560.0043
LYS 570.0068
ASN 580.0096
LEU 590.0066
ASP 600.0090
LEU 610.0058
SER 620.0094
PHE 630.0092
ASN 640.0056
PRO 650.0069
LEU 660.0086
ARG 670.0111
HIS 680.0125
LEU 690.0130
GLY 700.0143
SER 710.0156
TYR 720.0163
SER 730.0127
PHE 740.0110
PHE 750.0135
SER 760.0111
PHE 770.0085
PRO 780.0116
GLU 790.0082
LEU 800.0082
GLN 810.0121
VAL 820.0130
LEU 830.0119
ASP 840.0122
LEU 850.0118
SER 860.0131
ARG 870.0117
CYS 880.0104
GLU 890.0115
ILE 900.0124
GLN 910.0140
THR 920.0146
ILE 930.0150
GLU 940.0159
ASP 950.0174
GLY 960.0167
ALA 970.0154
TYR 980.0148
GLN 990.0171
SER 1000.0150
LEU 1010.0137
SER 1020.0161
HIS 1030.0149
LEU 1040.0143
SER 1050.0156
THR 1060.0150
LEU 1070.0145
ILE 1080.0141
LEU 1090.0137
THR 1100.0137
GLY 1110.0130
ASN 1120.0132
PRO 1130.0141
ILE 1140.0147
GLN 1150.0155
SER 1160.0158
LEU 1170.0151
ALA 1180.0155
LEU 1190.0163
GLY 1200.0164
ALA 1210.0159
PHE 1220.0164
SER 1230.0174
GLY 1240.0167
LEU 1250.0161
SER 1260.0176
SER 1270.0164
LEU 1280.0154
GLN 1290.0157
LYS 1300.0147
LEU 1310.0136
VAL 1320.0132
ALA 1330.0128
VAL 1340.0126
GLU 1350.0122
THR 1360.0122
ASN 1370.0118
LEU 1380.0108
ALA 1390.0088
SER 1400.0082
LEU 1410.0088
GLU 1420.0098
ASN 1430.0107
PHE 1440.0122
PRO 1450.0133
ILE 1460.0143
GLY 1470.0131
HIS 1480.0139
LEU 1490.0145
LYS 1500.0142
THR 1510.0150
LEU 1520.0132
LYS 1530.0133
GLU 1540.0126
LEU 1550.0116
ASN 1560.0110
VAL 1570.0097
ALA 1580.0096
HIS 1590.0093
ASN 1600.0087
LEU 1610.0076
ILE 1620.0056
GLN 1630.0046
SER 1640.0047
PHE 1650.0060
LYS 1660.0050
LEU 1670.0070
PRO 1680.0065
GLU 1690.0064
TYR 1700.0084
PHE 1710.0089
SER 1720.0091
ASN 1730.0100
LEU 1740.0107
THR 1750.0106
ASN 1760.0117
LEU 1770.0091
GLU 1780.0095
HIS 1790.0091
LEU 1800.0077
ASP 1810.0077
LEU 1820.0051
SER 1830.0057
SER 1840.0055
ASN 1850.0046
LYS 1860.0040
ILE 1870.0052
GLN 1880.0058
SER 1890.0068
ILE 1900.0075
TYR 1910.0080
CYS 1920.0087
THR 1930.0071
ASP 1940.0063
LEU 1950.0075
ARG 1960.0069
VAL 1970.0058
LEU 1980.0078
HIS 1990.0081
GLN 2000.0068
MET 2010.0083
PRO 2020.0073
LEU 2030.0074
LEU 2040.0065
ASN 2050.0064
LEU 2060.0056
SER 2070.0071
LEU 2080.0061
ASP 2090.0061
LEU 2100.0056
SER 2110.0062
LEU 2120.0047
ASN 2130.0049
PRO 2140.0047
MET 2150.0060
ASN 2160.0065
PHE 2170.0077
ILE 2180.0084
GLN 2190.0095
PRO 2200.0106
GLY 2210.0112
ALA 2220.0098
PHE 2230.0103
LYS 2240.0122
GLU 2250.0134
ILE 2260.0120
ARG 2270.0104
LEU 2280.0094
HIS 2290.0101
LYS 2300.0088
LEU 2310.0074
THR 2320.0086
LEU 2330.0065
ARG 2340.0055
ASN 2350.0043
ASN 2360.0043
PHE 2370.0042
ASP 2380.0038
SER 2390.0044
LEU 2400.0048
ASN 2410.0062
VAL 2420.0056
MET 2430.0053
LYS 2440.0062
THR 2450.0077
CYS 2460.0078
ILE 2470.0071
GLN 2480.0084
GLY 2490.0090
LEU 2500.0092
ALA 2510.0103
GLY 2520.0106
LEU 2530.0099
GLU 2540.0112
VAL 2550.0101
HIS 2560.0117
ARG 2570.0106
LEU 2580.0088
VAL 2590.0085
LEU 2600.0068
GLY 2610.0070
GLU 2620.0080
PHE 2630.0097
ARG 2640.0110
ASN 2650.0112
GLU 2660.0090
GLY 2670.0080
ASN 2680.0077
LEU 2690.0065
GLU 2700.0077
LYS 2710.0074
PHE 2720.0067
ASP 2730.0065
LYS 2740.0059
SER 2750.0055
ALA 2760.0050
LEU 2770.0047
GLU 2780.0053
GLY 2790.0065
LEU 2800.0070
CYS 2810.0078
ASN 2820.0085
LEU 2830.0089
THR 2840.0105
ILE 2850.0098
GLU 2860.0116
GLU 2870.0105
PHE 2880.0093
ARG 2890.0107
LEU 2900.0101
ALA 2910.0127
TYR 2920.0128
LEU 2930.0113
ASP 2940.0126
TYR 2950.0117
TYR 2960.0130
LEU 2970.0133
ASP 2980.0140
GLY 2990.0122
ILE 3000.0101
ILE 3010.0090
ASP 3020.0058
LEU 3030.0063
PHE 3040.0064
ASN 3050.0050
CYS 3060.0057
LEU 3070.0069
THR 3080.0067
ASN 3090.0084
VAL 3100.0096
SER 3110.0116
SER 3120.0116
PHE 3130.0109
SER 3140.0132
LEU 3150.0137
VAL 3160.0166
SER 3170.0183
VAL 3180.0162
THR 3190.0170
ILE 3200.0155
GLU 3210.0169
ARG 3220.0158
VAL 3230.0148
LYS 3240.0136
ASP 3250.0111
PHE 3260.0112
SER 3270.0097
TYR 3280.0075
ASN 3290.0062
PHE 3300.0071
GLY 3310.0078
TRP 3320.0094
GLN 3330.0104
HIS 3340.0118
LEU 3350.0119
GLU 3360.0136
LEU 3370.0169
VAL 3380.0204
ASN 3390.0231
CYS 3400.0210
LYS 3410.0224
PHE 3420.0207
GLY 3430.0217
GLN 3440.0205
PHE 3450.0188
PRO 3460.0163
THR 3470.0139
LEU 3480.0124
LYS 3490.0100
LEU 3500.0091
LYS 3510.0074
SER 3520.0086
LEU 3530.0096
LYS 3540.0102
ARG 3550.0113
LEU 3560.0117
THR 3570.0160
PHE 3580.0177
THR 3590.0212
SER 3600.0247
ASN 3610.0236
LYS 3620.0265
GLY 3630.0260
GLY 3640.0248
ASN 3650.0229
ALA 3660.0217
PHE 3670.0187
SER 3680.0172
GLU 3690.0147
VAL 3700.0134
ASP 3710.0109
LEU 3720.0104
PRO 3730.0084
SER 3740.0088
LEU 3750.0104
GLU 3760.0106
PHE 3770.0127
LEU 3780.0135
ASP 3790.0158
LEU 3800.0167
SER 3810.0186
ARG 3820.0227
ASN 3830.0231
GLY 3840.0231
LEU 3850.0210
SER 3860.0204
PHE 3870.0179
LYS 3880.0180
GLY 3890.0160
CYS 3900.0134
CYS 3910.0110
SER 3920.0108
GLN 3930.0100
SER 3940.0118
ASP 3950.0133
PHE 3960.0129
GLY 3970.0112
THR 3980.0099
ILE 3990.0075
SER 4000.0082
LEU 4010.0101
LYS 4020.0103
TYR 4030.0120
LEU 4040.0124
ASP 4050.0141
LEU 4060.0146
SER 4070.0155
PHE 4080.0182
ASN 4090.0186
GLY 4100.0191
VAL 4110.0174
ILE 4120.0149
THR 4130.0146
MET 4140.0118
SER 4150.0131
SER 4160.0108
ASN 4170.0077
PHE 4180.0077
LEU 4190.0078
GLY 4200.0077
LEU 4210.0076
GLU 4220.0051
GLN 4230.0069
LEU 4240.0077
GLU 4250.0082
HIS 4260.0096
LEU 4270.0096
ASP 4280.0106
PHE 4290.0102
GLN 4300.0102
HIS 4310.0111
SER 4320.0134
ASN 4330.0129
LEU 4340.0107
LYS 4350.0120
GLN 4360.0117
MET 4370.0077
SER 4380.0086
GLU 4390.0114
PHE 4400.0096
SER 4410.0064
VAL 4420.0061
PHE 4430.0037
LEU 4440.0037
SER 4450.0033
LEU 4460.0029
ARG 4470.0019
ASN 4480.0046
LEU 4490.0046
ILE 4500.0065
TYR 4510.0066
LEU 4520.0052
ASP 4530.0059
ILE 4540.0041
SER 4550.0045
HIS 4560.0044
THR 4570.0060
HIS 4580.0054
THR 4590.0041
ARG 4600.0051
VAL 4610.0051
ALA 4620.0075
PHE 4630.0077
ASN 4640.0074
GLY 4650.0061
ILE 4660.0040
PHE 4670.0025
ASN 4680.0036
GLY 4690.0022
LEU 4700.0025
SER 4710.0046
SER 4720.0055
LEU 4730.0050
GLU 4740.0067
VAL 4750.0060
LEU 4760.0044
LYS 4770.0049
MET 4780.0036
ALA 4790.0044
GLY 4800.0030
ASN 4810.0023
SER 4820.0041
PHE 4830.0055
GLN 4840.0070
GLU 4850.0089
ASN 4860.0084
PHE 4870.0083
LEU 4880.0077
PRO 4890.0073
ASP 4900.0070
ILE 4910.0058
PHE 4920.0064
THR 4930.0070
GLU 4940.0062
LEU 4950.0063
ARG 4960.0073
ASN 4970.0072
LEU 4980.0071
THR 4990.0074
PHE 5000.0072
LEU 5010.0071
ASP 5020.0077
LEU 5030.0079
SER 5040.0083
GLN 5050.0081
CYS 5060.0078
GLN 5070.0092
LEU 5080.0090
GLU 5090.0098
GLN 5100.0093
LEU 5110.0085
SER 5120.0071
PRO 5130.0060
THR 5140.0063
ALA 5150.0071
PHE 5160.0066
ASN 5170.0064
SER 5180.0068
LEU 5190.0067
SER 5200.0064
SER 5210.0066
LEU 5220.0068
GLN 5230.0071
VAL 5240.0080
LEU 5250.0081
ASN 5260.0091
MET 5270.0099
SER 5280.0111
HIS 5290.0124
ASN 5300.0118
ASN 5310.0119
PHE 5320.0115
PHE 5330.0107
SER 5340.0079
LEU 5350.0055
ASP 5360.0052
THR 5370.0021
PHE 5380.0037
PRO 5390.0051
TYR 5400.0033
LYS 5410.0008
CYS 5420.0032
LEU 5430.0040
ASN 5440.0037
SER 5450.0051
LEU 5460.0058
GLN 5470.0088
VAL 5480.0095
LEU 5490.0081
ASP 5500.0101
TYR 5510.0096
SER 5520.0124
LEU 5530.0142
ASN 5540.0129
HIS 5550.0122
ILE 5560.0089
MET 5570.0084
THR 5580.0075
SER 5590.0070
LYS 5600.0120
LYS 5610.0114
GLN 5620.0121
GLU 5630.0097
LEU 5640.0067
GLN 5650.0095
HIS 5660.0058
PHE 5670.0040
PRO 5680.0050
SER 5690.0079
SER 5700.0079
LEU 5710.0077
ALA 5720.0140
PHE 5730.0131
LEU 5740.0093
ASN 5750.0114
LEU 5760.0088
THR 5770.0131
GLN 5780.0145
ASN 5790.0113
ASP 5800.0118
PHE 5810.0070
ALA 5820.0113
CYS 5830.0060
THR 5840.0150
CYS 5850.0214
GLU 5860.0249
HIS 5870.0156
GLN 5880.0164
SER 5890.0176
PHE 5900.0097
LEU 5910.0091
GLN 5920.0153
TRP 5930.0132
ILE 5940.0101
LYS 5950.0165
ASP 5960.0197
GLN 5970.0150
ARG 5980.0169
GLN 5990.0205
LEU 6000.0157
LEU 6010.0145
VAL 6020.0156
GLU 6030.0168
VAL 6040.0153
GLU 6050.0169
ARG 6060.0161
MET 6070.0129
GLU 6080.0124
CYS 6090.0083
ALA 6100.0137
THR 6110.0149
PRO 6120.0128
SER 6130.0160
ASP 6140.0103
LYS 6150.0068
GLN 6160.0134
GLY 6170.0160
MET 6180.0121
PRO 6190.0131
VAL 6200.0076
LEU 6210.0135
SER 6220.0181
LEU 6230.0110
ASN 6240.0168
ILE 6250.0215
THR 6260.0283
CYS 6270.0368
GLU 10.0226
ALA 20.0162
ALA 30.0146
ALA 40.0144
LYS 50.0051
MET 60.0030
GLN 70.0068
ARG 80.0139
LEU 90.0147
VAL 100.0155
LEU 110.0152
LEU 120.0183
LEU 130.0173
ALA 140.0146
ILE 150.0169
SER 160.0139
LEU 170.0112
LEU 180.0073
LEU 190.0069
TYR 200.0070
GLN 210.0030
ASP 220.0028
LEU 230.0037
PRO 240.0077
VAL 250.0086
ARG 260.0091
SER 270.0088
GLU 280.0073
PHE 290.0106
GLU 300.0097
LEU 310.0066
ASP 320.0041
ARG 330.0043
ILE 340.0039
CYS 350.0064
GLY 360.0050
TYR 370.0008
GLY 380.0038
THR 390.0072
ALA 400.0080
ARG 410.0045
CYS 420.0136
ARG 430.0199
LYS 440.0312
LYS 450.0295
CYS 460.0185
ARG 470.0154
SER 480.0164
GLN 490.0140
GLU 500.0154
TYR 510.0196
ARG 520.0264
ILE 530.0288
GLY 540.0336
ARG 550.0349
CYS 560.0262
PRO 570.0283
ASN 580.0313
THR 590.0399
TYR 600.0338
ALA 610.0248
CYS 620.0197
CYS 630.0172
LEU 640.0156
ARG 650.0133
LYS 660.0151
TRP 670.0148
ASP 680.0137
GLU 690.0145
SER 700.0128
LEU 710.0129
LEU 720.0144
ASN 730.0133
ARG 740.0113
THR 750.0125
LYS 760.0119
PRO 770.0103
GLU 780.0095
ALA 790.0076
ALA 800.0079
ALA 810.0105
LYS 820.0088
LYS 830.0084
GLU 840.0098
MET 850.0088
ASN 860.0069
LEU 870.0045
SER 880.0034
VAL 890.0018
GLY 900.0048
LEU 910.0084
GLY 920.0150
GLY 930.0220
GLY 940.0203
SER 950.0145
ASN 960.0062
LEU 970.0025
SER 980.0022
VAL 990.0047
GLY 1000.0083
LEU 1010.0094
GLY 1020.0108
GLU 1030.0089
ILE 1040.0105
GLY 1050.0101
GLY 1060.0124
GLY 1070.0100
SER 1080.0076
LYS 1090.0051
LEU 1100.0043
LEU 1110.0041
ASP 1120.0031
ILE 1130.0015
ASN 1140.0038
LEU 1150.0046
GLY 1160.0051
ARG 1170.0069
GLY 1180.0079
GLY 1190.0091
GLY 1200.0095
SER 1210.0046
MET 1220.0030
VAL 1230.0026
ASP 1240.0024
LEU 1250.0021
THR 1260.0020
PHE 1270.0022
GLY 1280.0026
GLY 1290.0032
VAL 1300.0034
GLY 1310.0035
GLY 1320.0036
GLY 1330.0043
SER 1340.0038
THR 1350.0041
PHE 1360.0033
THR 1370.0037
PHE 1380.0034
PHE 1390.0041
PRO 1400.0041
LEU 1410.0048
VAL 1420.0060
ILE 1430.0068
GLY 1440.0091
GLY 1450.0094
GLY 1460.0074
SER 1470.0069
ASP 1480.0055
ALA 1490.0060
MET 1500.0051
TYR 1510.0043
LEU 1520.0041
GLY 1530.0041
PHE 1540.0040
ALA 1550.0041
ALA 1560.0048
GLY 1570.0057
GLY 1580.0061
GLY 1590.0062
SER 1600.0059
ALA 1610.0036
GLY 1620.0026
GLY 1630.0018
GLU 1640.0014
ASN 1650.0015
HIS 1660.0021
VAL 1670.0027
ALA 1680.0030
PHE 1690.0036
GLY 1700.0038
PRO 1710.0096
GLY 1720.0118
PRO 1730.0134
GLY 1740.0099
VAL 1750.0055
ASP 1760.0039
LEU 1770.0023
THR 1780.0021
PHE 1790.0011
GLY 1800.0023
GLY 1810.0038
VAL 1820.0037
GLN 1830.0038
PHE 1840.0029
ALA 1850.0039
MET 1860.0040
VAL 1870.0070
ASN 1880.0040
ASN 1890.0074
GLY 1900.0047
PRO 1910.0079
GLY 1920.0079
PRO 1930.0048
GLY 1940.0046
GLU 1950.0045
SER 1960.0058
PHE 1970.0039
THR 1980.0033
ALA 1990.0028
GLN 2000.0004
PRO 2010.0005
ALA 2020.0018
ASP 2030.0030
MET 2040.0029
GLN 2050.0032
ALA 2060.0014
GLY 2070.0015
ILE 2080.0028
LYS 2090.0038
GLY 2100.0060
PRO 2110.0049
GLY 2120.0046
PRO 2130.0047
GLY 2140.0028
GLY 2150.0053
SER 2160.0044
ILE 2170.0051
GLN 2180.0049
VAL 2190.0040
ILE 2200.0059
ASN 2210.0032
GLY 2220.0022
SER 2230.0064
THR 2240.0111
ILE 2250.0117
GLY 2260.0134
THR 2270.0105
GLY 2280.0040
SER 2290.0093
LYS 2300.0077
LYS 2310.0079
THR 2320.0056
ILE 2330.0057
LEU 2340.0039
ILE 2350.0053
TYR 2360.0056
SER 2370.0075
ILE 2380.0111
ILE 2390.0115
GLY 2400.0159
VAL 2410.0228
LYS 2420.0209
LYS 2430.0240
GLY 2440.0239
THR 2450.0202
LEU 2460.0171
ALA 2470.0133
TRP 2480.0099
ALA 2490.0062
ARG 2500.0039
THR 2510.0039
GLY 2520.0050
PHE 2530.0044
SER 2540.0055
PRO 2550.0061
ALA 2560.0057
LYS 2570.0080
LYS 2580.0114
LEU 2590.0111
ASN 2600.0157
ALA 2610.0231
GLY 2620.0162
VAL 2630.0115
VAL 2640.0055
ARG 2650.0027
VAL 2660.0040
PHE 2670.0039
PHE 2680.0044
LEU 2690.0040
ASN 2700.0045
GLN 2710.0034
LYS 2720.0021
LYS 2730.0051
ALA 2740.0067
LYS 2750.0065
ASP 2760.0103
VAL 2770.0082
LEU 2780.0083
ARG 2790.0105
LYS 2800.0106
THR 2810.0103
SER 2820.0099
ARG 2830.0092
PRO 2840.0092
MET 2850.0079
VAL 2860.0104
ASP 2870.0111
LEU 2880.0142
THR 2890.0196
PHE 2900.0180
GLY 2910.0223
GLY 2920.0220

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.