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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 58  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0625
GLU 270.0050
PRO 280.0055
CYS 290.0056
VAL 300.0071
GLU 310.0075
VAL 320.0082
VAL 330.0083
PRO 340.0082
ASN 350.0071
ILE 360.0066
THR 370.0059
TYR 380.0052
GLN 390.0054
CYS 400.0044
MET 410.0052
GLU 420.0059
LEU 430.0055
ASN 440.0054
PHE 450.0040
TYR 460.0041
LYS 470.0027
ILE 480.0020
PRO 490.0024
ASP 500.0024
ASN 510.0035
LEU 520.0042
PRO 530.0050
PHE 540.0047
SER 550.0054
THR 560.0046
LYS 570.0039
ASN 580.0037
LEU 590.0030
ASP 600.0033
LEU 610.0029
SER 620.0030
PHE 630.0039
ASN 640.0039
PRO 650.0044
LEU 660.0036
ARG 670.0039
HIS 680.0035
LEU 690.0026
GLY 700.0027
SER 710.0025
TYR 720.0022
SER 730.0017
PHE 740.0017
PHE 750.0022
SER 760.0024
PHE 770.0026
PRO 780.0031
GLU 790.0033
LEU 800.0025
GLN 810.0024
VAL 820.0016
LEU 830.0015
ASP 840.0018
LEU 850.0021
SER 860.0024
ARG 870.0021
CYS 880.0026
GLU 890.0031
ILE 900.0031
GLN 910.0037
THR 920.0034
ILE 930.0028
GLU 940.0028
ASP 950.0029
GLY 960.0023
ALA 970.0021
TYR 980.0018
GLN 990.0021
SER 1000.0020
LEU 1010.0018
SER 1020.0018
HIS 1030.0017
LEU 1040.0014
SER 1050.0014
THR 1060.0018
LEU 1070.0017
ILE 1080.0015
LEU 1090.0016
THR 1100.0014
GLY 1110.0015
ASN 1120.0021
PRO 1130.0026
ILE 1140.0027
GLN 1150.0033
SER 1160.0034
LEU 1170.0024
ALA 1180.0026
LEU 1190.0025
GLY 1200.0025
ALA 1210.0023
PHE 1220.0020
SER 1230.0019
GLY 1240.0017
LEU 1250.0016
SER 1260.0016
SER 1270.0015
LEU 1280.0015
GLN 1290.0017
LYS 1300.0017
LEU 1310.0016
VAL 1320.0013
ALA 1330.0012
VAL 1340.0005
GLU 1350.0005
THR 1360.0008
ASN 1370.0006
LEU 1380.0007
ALA 1390.0009
SER 1400.0009
LEU 1410.0008
GLU 1420.0011
ASN 1430.0008
PHE 1440.0009
PRO 1450.0015
ILE 1460.0018
GLY 1470.0015
HIS 1480.0019
LEU 1490.0019
LYS 1500.0021
THR 1510.0022
LEU 1520.0019
LYS 1530.0019
GLU 1540.0017
LEU 1550.0014
ASN 1560.0013
VAL 1570.0004
ALA 1580.0006
HIS 1590.0010
ASN 1600.0008
LEU 1610.0013
ILE 1620.0014
GLN 1630.0020
SER 1640.0020
PHE 1650.0016
LYS 1660.0020
LEU 1670.0016
PRO 1680.0018
GLU 1690.0025
TYR 1700.0022
PHE 1710.0021
SER 1720.0024
ASN 1730.0025
LEU 1740.0022
THR 1750.0026
ASN 1760.0026
LEU 1770.0018
GLU 1780.0017
HIS 1790.0014
LEU 1800.0010
ASP 1810.0010
LEU 1820.0004
SER 1830.0012
SER 1840.0019
ASN 1850.0017
LYS 1860.0022
ILE 1870.0024
GLN 1880.0032
SER 1890.0030
ILE 1900.0025
TYR 1910.0032
CYS 1920.0034
THR 1930.0036
ASP 1940.0027
LEU 1950.0025
ARG 1960.0034
VAL 1970.0029
LEU 1980.0026
HIS 1990.0034
GLN 2000.0038
MET 2010.0036
PRO 2020.0033
LEU 2030.0036
LEU 2040.0028
ASN 2050.0025
LEU 2060.0016
SER 2070.0014
LEU 2080.0007
ASP 2090.0011
LEU 2100.0012
SER 2110.0020
LEU 2120.0029
ASN 2130.0026
PRO 2140.0034
MET 2150.0029
ASN 2160.0037
PHE 2170.0034
ILE 2180.0028
GLN 2190.0033
PRO 2200.0033
GLY 2210.0032
ALA 2220.0026
PHE 2230.0019
LYS 2240.0025
GLU 2250.0027
ILE 2260.0021
ARG 2270.0015
LEU 2280.0012
HIS 2290.0018
LYS 2300.0016
LEU 2310.0012
THR 2320.0017
LEU 2330.0020
ARG 2340.0028
ASN 2350.0035
ASN 2360.0031
PHE 2370.0036
ASP 2380.0045
SER 2390.0043
LEU 2400.0037
ASN 2410.0039
VAL 2420.0038
MET 2430.0031
LYS 2440.0030
THR 2450.0032
CYS 2460.0027
ILE 2470.0022
GLN 2480.0024
GLY 2490.0024
LEU 2500.0016
ALA 2510.0018
GLY 2520.0015
LEU 2530.0010
GLU 2540.0011
VAL 2550.0012
HIS 2560.0020
ARG 2570.0020
LEU 2580.0018
VAL 2590.0023
LEU 2600.0025
GLY 2610.0032
GLU 2620.0036
PHE 2630.0043
ARG 2640.0050
ASN 2650.0056
GLU 2660.0052
GLY 2670.0051
ASN 2680.0046
LEU 2690.0041
GLU 2700.0045
LYS 2710.0038
PHE 2720.0029
ASP 2730.0025
LYS 2740.0021
SER 2750.0021
ALA 2760.0023
LEU 2770.0020
GLU 2780.0018
GLY 2790.0018
LEU 2800.0015
CYS 2810.0014
ASN 2820.0013
LEU 2830.0011
THR 2840.0013
ILE 2850.0016
GLU 2860.0021
GLU 2870.0024
PHE 2880.0023
ARG 2890.0025
LEU 2900.0026
ALA 2910.0029
TYR 2920.0033
LEU 2930.0031
ASP 2940.0036
TYR 2950.0031
TYR 2960.0029
LEU 2970.0023
ASP 2980.0023
GLY 2990.0023
ILE 3000.0023
ILE 3010.0025
ASP 3020.0024
LEU 3030.0023
PHE 3040.0024
ASN 3050.0024
CYS 3060.0023
LEU 3070.0026
THR 3080.0029
ASN 3090.0029
VAL 3100.0027
SER 3110.0028
SER 3120.0026
PHE 3130.0025
SER 3140.0025
LEU 3150.0025
VAL 3160.0025
SER 3170.0026
VAL 3180.0024
THR 3190.0024
ILE 3200.0023
GLU 3210.0024
ARG 3220.0026
VAL 3230.0026
LYS 3240.0029
ASP 3250.0028
PHE 3260.0027
SER 3270.0031
TYR 3280.0033
ASN 3290.0032
PHE 3300.0030
GLY 3310.0030
TRP 3320.0028
GLN 3330.0027
HIS 3340.0023
LEU 3350.0022
GLU 3360.0018
LEU 3370.0016
VAL 3380.0016
ASN 3390.0017
CYS 3400.0016
LYS 3410.0017
PHE 3420.0017
GLY 3430.0021
GLN 3440.0021
PHE 3450.0019
PRO 3460.0020
THR 3470.0026
LEU 3480.0024
LYS 3490.0027
LEU 3500.0026
LYS 3510.0028
SER 3520.0028
LEU 3530.0023
LYS 3540.0019
ARG 3550.0016
LEU 3560.0014
THR 3570.0008
PHE 3580.0009
THR 3590.0006
SER 3600.0008
ASN 3610.0011
LYS 3620.0011
GLY 3630.0014
GLY 3640.0015
ASN 3650.0012
ALA 3660.0014
PHE 3670.0016
SER 3680.0019
GLU 3690.0019
VAL 3700.0017
ASP 3710.0019
LEU 3720.0019
PRO 3730.0019
SER 3740.0018
LEU 3750.0015
GLU 3760.0012
PHE 3770.0010
LEU 3780.0008
ASP 3790.0006
LEU 3800.0008
SER 3810.0010
ARG 3820.0011
ASN 3830.0011
GLY 3840.0014
LEU 3850.0012
SER 3860.0014
PHE 3870.0015
LYS 3880.0017
GLY 3890.0018
CYS 3900.0015
CYS 3910.0015
SER 3920.0013
GLN 3930.0013
SER 3940.0017
ASP 3950.0016
PHE 3960.0014
GLY 3970.0015
THR 3980.0013
ILE 3990.0012
SER 4000.0012
LEU 4010.0012
LYS 4020.0016
TYR 4030.0014
LEU 4040.0013
ASP 4050.0014
LEU 4060.0015
SER 4070.0019
PHE 4080.0019
ASN 4090.0018
GLY 4100.0016
VAL 4110.0015
ILE 4120.0018
THR 4130.0018
MET 4140.0017
SER 4150.0019
SER 4160.0018
ASN 4170.0016
PHE 4180.0015
LEU 4190.0016
GLY 4200.0017
LEU 4210.0015
GLU 4220.0019
GLN 4230.0019
LEU 4240.0019
GLU 4250.0024
HIS 4260.0024
LEU 4270.0021
ASP 4280.0022
PHE 4290.0020
GLN 4300.0022
HIS 4310.0022
SER 4320.0018
ASN 4330.0016
LEU 4340.0017
LYS 4350.0017
GLN 4360.0020
MET 4370.0021
SER 4380.0021
GLU 4390.0020
PHE 4400.0019
SER 4410.0019
VAL 4420.0020
PHE 4430.0021
LEU 4440.0021
SER 4450.0021
LEU 4460.0023
ARG 4470.0028
ASN 4480.0029
LEU 4490.0029
ILE 4500.0035
TYR 4510.0035
LEU 4520.0029
ASP 4530.0029
ILE 4540.0026
SER 4550.0027
HIS 4560.0026
THR 4570.0020
HIS 4580.0020
THR 4590.0020
ARG 4600.0020
VAL 4610.0020
ALA 4620.0027
PHE 4630.0025
ASN 4640.0027
GLY 4650.0025
ILE 4660.0026
PHE 4670.0033
ASN 4680.0031
GLY 4690.0031
LEU 4700.0034
SER 4710.0037
SER 4720.0040
LEU 4730.0040
GLU 4740.0045
VAL 4750.0044
LEU 4760.0041
LYS 4770.0035
MET 4780.0034
ALA 4790.0036
GLY 4800.0035
ASN 4810.0034
SER 4820.0042
PHE 4830.0041
GLN 4840.0042
GLU 4850.0046
ASN 4860.0047
PHE 4870.0048
LEU 4880.0047
PRO 4890.0047
ASP 4900.0047
ILE 4910.0047
PHE 4920.0046
THR 4930.0045
GLU 4940.0044
LEU 4950.0045
ARG 4960.0046
ASN 4970.0049
LEU 4980.0049
THR 4990.0051
PHE 5000.0050
LEU 5010.0048
ASP 5020.0043
LEU 5030.0043
SER 5040.0043
GLN 5050.0044
CYS 5060.0044
GLN 5070.0049
LEU 5080.0049
GLU 5090.0049
GLN 5100.0049
LEU 5110.0048
SER 5120.0055
PRO 5130.0054
THR 5140.0055
ALA 5150.0055
PHE 5160.0052
ASN 5170.0052
SER 5180.0053
LEU 5190.0052
SER 5200.0050
SER 5210.0051
LEU 5220.0052
GLN 5230.0051
VAL 5240.0050
LEU 5250.0049
ASN 5260.0048
MET 5270.0047
SER 5280.0046
HIS 5290.0048
ASN 5300.0050
ASN 5310.0051
PHE 5320.0052
PHE 5330.0047
SER 5340.0045
LEU 5350.0043
ASP 5360.0050
THR 5370.0046
PHE 5380.0055
PRO 5390.0059
TYR 5400.0051
LYS 5410.0052
CYS 5420.0052
LEU 5430.0050
ASN 5440.0048
SER 5450.0048
LEU 5460.0046
GLN 5470.0042
VAL 5480.0042
LEU 5490.0043
ASP 5500.0043
TYR 5510.0041
SER 5520.0040
LEU 5530.0045
ASN 5540.0046
HIS 5550.0043
ILE 5560.0037
MET 5570.0029
THR 5580.0033
SER 5590.0042
LYS 5600.0055
LYS 5610.0064
GLN 5620.0061
GLU 5630.0061
LEU 5640.0046
GLN 5650.0048
HIS 5660.0050
PHE 5670.0041
PRO 5680.0041
SER 5690.0036
SER 5700.0036
LEU 5710.0034
ALA 5720.0027
PHE 5730.0028
LEU 5740.0028
ASN 5750.0031
LEU 5760.0027
THR 5770.0029
GLN 5780.0039
ASN 5790.0035
ASP 5800.0036
PHE 5810.0020
ALA 5820.0012
CYS 5830.0017
THR 5840.0019
CYS 5850.0042
GLU 5860.0041
HIS 5870.0031
GLN 5880.0042
SER 5890.0052
PHE 5900.0035
LEU 5910.0025
GLN 5920.0043
TRP 5930.0038
ILE 5940.0018
LYS 5950.0034
ASP 5960.0042
GLN 5970.0024
ARG 5980.0017
GLN 5990.0011
LEU 6000.0012
LEU 6010.0011
VAL 6020.0017
GLU 6030.0024
VAL 6040.0021
GLU 6050.0032
ARG 6060.0033
MET 6070.0029
GLU 6080.0042
CYS 6090.0037
ALA 6100.0048
THR 6110.0042
PRO 6120.0046
SER 6130.0078
ASP 6140.0088
LYS 6150.0070
GLN 6160.0074
GLY 6170.0073
MET 6180.0066
PRO 6190.0051
VAL 6200.0031
LEU 6210.0040
SER 6220.0068
LEU 6230.0063
ASN 6240.0080
ILE 6250.0076
THR 6260.0098
CYS 6270.0148
GLU 10.0067
ALA 20.0053
ALA 30.0038
ALA 40.0035
LYS 50.0002
MET 60.0014
GLN 70.0021
ARG 80.0037
LEU 90.0043
VAL 100.0049
LEU 110.0046
LEU 120.0055
LEU 130.0051
ALA 140.0043
ILE 150.0051
SER 160.0044
LEU 170.0029
LEU 180.0018
LEU 190.0023
TYR 200.0027
GLN 210.0020
ASP 220.0013
LEU 230.0014
PRO 240.0026
VAL 250.0035
ARG 260.0045
SER 270.0037
GLU 280.0043
PHE 290.0048
GLU 300.0034
LEU 310.0026
ASP 320.0030
ARG 330.0028
ILE 340.0018
CYS 350.0017
GLY 360.0014
TYR 370.0012
GLY 380.0013
THR 390.0013
ALA 400.0016
ARG 410.0021
CYS 420.0034
ARG 430.0042
LYS 440.0057
LYS 450.0046
CYS 460.0020
ARG 470.0021
SER 480.0018
GLN 490.0020
GLU 500.0016
TYR 510.0018
ARG 520.0025
ILE 530.0032
GLY 540.0046
ARG 550.0057
CYS 560.0050
PRO 570.0064
ASN 580.0074
THR 590.0079
TYR 600.0065
ALA 610.0040
CYS 620.0031
CYS 630.0022
LEU 640.0013
ARG 650.0014
LYS 660.0026
TRP 670.0025
ASP 680.0021
GLU 690.0019
SER 700.0018
LEU 710.0024
LEU 720.0032
ASN 730.0024
ARG 740.0022
THR 750.0033
LYS 760.0077
PRO 770.0104
GLU 780.0097
ALA 790.0139
ALA 800.0170
ALA 810.0364
LYS 820.0329
LYS 830.0274
GLU 840.0313
MET 850.0247
ASN 860.0234
LEU 870.0216
SER 880.0205
VAL 890.0206
GLY 900.0189
LEU 910.0215
GLY 920.0278
GLY 930.0308
GLY 940.0328
SER 950.0245
ASN 960.0180
LEU 970.0185
SER 980.0210
VAL 990.0235
GLY 1000.0264
LEU 1010.0313
GLY 1020.0373
GLU 1030.0370
ILE 1040.0406
GLY 1050.0402
GLY 1060.0327
GLY 1070.0314
SER 1080.0284
LYS 1090.0268
LEU 1100.0252
LEU 1110.0212
ASP 1120.0146
ILE 1130.0142
ASN 1140.0194
LEU 1150.0218
GLY 1160.0457
ARG 1170.0625
GLY 1180.0361
GLY 1190.0341
GLY 1200.0479
SER 1210.0279
MET 1220.0224
VAL 1230.0191
ASP 1240.0150
LEU 1250.0129
THR 1260.0096
PHE 1270.0090
GLY 1280.0115
GLY 1290.0149
VAL 1300.0161
GLY 1310.0225
GLY 1320.0218
GLY 1330.0209
SER 1340.0177
THR 1350.0159
PHE 1360.0080
THR 1370.0045
PHE 1380.0060
PHE 1390.0083
PRO 1400.0088
LEU 1410.0177
VAL 1420.0275
ILE 1430.0263
GLY 1440.0332
GLY 1450.0391
GLY 1460.0383
SER 1470.0339
ASP 1480.0340
ALA 1490.0228
MET 1500.0172
TYR 1510.0062
LEU 1520.0064
GLY 1530.0075
PHE 1540.0081
ALA 1550.0088
ALA 1560.0168
GLY 1570.0196
GLY 1580.0216
GLY 1590.0225
SER 1600.0227
ALA 1610.0247
GLY 1620.0226
GLY 1630.0178
GLU 1640.0136
ASN 1650.0103
HIS 1660.0109
VAL 1670.0134
ALA 1680.0156
PHE 1690.0197
GLY 1700.0217
PRO 1710.0293
GLY 1720.0361
PRO 1730.0459
GLY 1740.0348
VAL 1750.0225
ASP 1760.0218
LEU 1770.0148
THR 1780.0145
PHE 1790.0097
GLY 1800.0097
GLY 1810.0200
VAL 1820.0241
GLN 1830.0275
PHE 1840.0274
ALA 1850.0342
MET 1860.0322
VAL 1870.0321
ASN 1880.0174
ASN 1890.0109
GLY 1900.0289
PRO 1910.0521
GLY 1920.0400
PRO 1930.0303
GLY 1940.0181
GLU 1950.0095
SER 1960.0318
PHE 1970.0226
THR 1980.0242
ALA 1990.0303
GLN 2000.0059
PRO 2010.0059
ALA 2020.0165
ASP 2030.0312
MET 2040.0341
GLN 2050.0390
ALA 2060.0142
GLY 2070.0050
ILE 2080.0240
LYS 2090.0324
GLY 2100.0418
PRO 2110.0496
GLY 2120.0261
PRO 2130.0556
GLY 2140.0380
GLY 2150.0305
SER 2160.0464
ILE 2170.0511
GLN 2180.0433
VAL 2190.0399
ILE 2200.0408
ASN 2210.0494
GLY 2220.0378
SER 2230.0315
THR 2240.0261
ILE 2250.0144
GLY 2260.0169
THR 2270.0143
GLY 2280.0158
SER 2290.0212
LYS 2300.0155
LYS 2310.0140
THR 2320.0128
ILE 2330.0127
LEU 2340.0155
ILE 2350.0160
TYR 2360.0194
SER 2370.0176
ILE 2380.0156
ILE 2390.0126
GLY 2400.0115
VAL 2410.0086
LYS 2420.0057
LYS 2430.0045
GLY 2440.0029
THR 2450.0045
LEU 2460.0137
ALA 2470.0127
TRP 2480.0137
ALA 2490.0125
ARG 2500.0137
THR 2510.0237
GLY 2520.0221
PHE 2530.0152
SER 2540.0161
PRO 2550.0174
ALA 2560.0194
LYS 2570.0240
LYS 2580.0181
LEU 2590.0216
ASN 2600.0268
ALA 2610.0267
GLY 2620.0156
VAL 2630.0183
VAL 2640.0181
ARG 2650.0185
VAL 2660.0273
PHE 2670.0194
PHE 2680.0176
LEU 2690.0085
ASN 2700.0077
GLN 2710.0022
LYS 2720.0021
LYS 2730.0024
ALA 2740.0027
LYS 2750.0031
ASP 2760.0028
VAL 2770.0034
LEU 2780.0035
ARG 2790.0029
LYS 2800.0027
THR 2810.0040
SER 2820.0047
ARG 2830.0038
PRO 2840.0041
MET 2850.0039
VAL 2860.0028
ASP 2870.0035
LEU 2880.0022
THR 2890.0034
PHE 2900.0019
GLY 2910.0020
GLY 2920.0056

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.