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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 59  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1194
GLU 270.0047
PRO 280.0049
CYS 290.0040
VAL 300.0042
GLU 310.0037
VAL 320.0033
VAL 330.0025
PRO 340.0030
ASN 350.0026
ILE 360.0015
THR 370.0017
TYR 380.0023
GLN 390.0028
CYS 400.0029
MET 410.0034
GLU 420.0041
LEU 430.0040
ASN 440.0039
PHE 450.0031
TYR 460.0027
LYS 470.0022
ILE 480.0017
PRO 490.0026
ASP 500.0030
ASN 510.0038
LEU 520.0030
PRO 530.0029
PHE 540.0027
SER 550.0021
THR 560.0013
LYS 570.0008
ASN 580.0009
LEU 590.0011
ASP 600.0018
LEU 610.0019
SER 620.0024
PHE 630.0031
ASN 640.0028
PRO 650.0028
LEU 660.0020
ARG 670.0022
HIS 680.0017
LEU 690.0012
GLY 700.0008
SER 710.0007
TYR 720.0008
SER 730.0006
PHE 740.0006
PHE 750.0014
SER 760.0017
PHE 770.0013
PRO 780.0020
GLU 790.0018
LEU 800.0011
GLN 810.0017
VAL 820.0018
LEU 830.0016
ASP 840.0019
LEU 850.0018
SER 860.0023
ARG 870.0024
CYS 880.0020
GLU 890.0025
ILE 900.0021
GLN 910.0024
THR 920.0020
ILE 930.0018
GLU 940.0015
ASP 950.0016
GLY 960.0015
ALA 970.0012
TYR 980.0014
GLN 990.0017
SER 1000.0016
LEU 1010.0016
SER 1020.0024
HIS 1030.0024
LEU 1040.0022
SER 1050.0028
THR 1060.0029
LEU 1070.0025
ILE 1080.0025
LEU 1090.0024
THR 1100.0026
GLY 1110.0026
ASN 1120.0023
PRO 1130.0025
ILE 1140.0024
GLN 1150.0025
SER 1160.0022
LEU 1170.0021
ALA 1180.0021
LEU 1190.0022
GLY 1200.0021
ALA 1210.0021
PHE 1220.0023
SER 1230.0023
GLY 1240.0022
LEU 1250.0024
SER 1260.0028
SER 1270.0032
LEU 1280.0031
GLN 1290.0035
LYS 1300.0034
LEU 1310.0032
VAL 1320.0030
ALA 1330.0027
VAL 1340.0029
GLU 1350.0028
THR 1360.0025
ASN 1370.0015
LEU 1380.0013
ALA 1390.0011
SER 1400.0009
LEU 1410.0010
GLU 1420.0007
ASN 1430.0009
PHE 1440.0015
PRO 1450.0017
ILE 1460.0022
GLY 1470.0017
HIS 1480.0024
LEU 1490.0027
LYS 1500.0028
THR 1510.0033
LEU 1520.0033
LYS 1530.0034
GLU 1540.0034
LEU 1550.0032
ASN 1560.0032
VAL 1570.0025
ALA 1580.0029
HIS 1590.0032
ASN 1600.0026
LEU 1610.0023
ILE 1620.0025
GLN 1630.0029
SER 1640.0024
PHE 1650.0017
LYS 1660.0017
LEU 1670.0009
PRO 1680.0010
GLU 1690.0017
TYR 1700.0017
PHE 1710.0017
SER 1720.0020
ASN 1730.0025
LEU 1740.0024
THR 1750.0030
ASN 1760.0034
LEU 1770.0029
GLU 1780.0031
HIS 1790.0030
LEU 1800.0025
ASP 1810.0028
LEU 1820.0020
SER 1830.0030
SER 1840.0040
ASN 1850.0035
LYS 1860.0039
ILE 1870.0041
GLN 1880.0050
SER 1890.0045
ILE 1900.0035
TYR 1910.0045
CYS 1920.0044
THR 1930.0044
ASP 1940.0031
LEU 1950.0028
ARG 1960.0037
VAL 1970.0027
LEU 1980.0026
HIS 1990.0038
GLN 2000.0042
MET 2010.0040
PRO 2020.0040
LEU 2030.0044
LEU 2040.0033
ASN 2050.0032
LEU 2060.0021
SER 2070.0023
LEU 2080.0015
ASP 2090.0024
LEU 2100.0024
SER 2110.0036
LEU 2120.0049
ASN 2130.0045
PRO 2140.0055
MET 2150.0046
ASN 2160.0056
PHE 2170.0053
ILE 2180.0043
GLN 2190.0051
PRO 2200.0052
GLY 2210.0051
ALA 2220.0041
PHE 2230.0032
LYS 2240.0043
GLU 2250.0045
ILE 2260.0033
ARG 2270.0025
LEU 2280.0016
HIS 2290.0023
LYS 2300.0018
LEU 2310.0011
THR 2320.0021
LEU 2330.0025
ARG 2340.0036
ASN 2350.0045
ASN 2360.0044
PHE 2370.0049
ASP 2380.0062
SER 2390.0056
LEU 2400.0044
ASN 2410.0052
VAL 2420.0053
MET 2430.0039
LYS 2440.0038
THR 2450.0048
CYS 2460.0039
ILE 2470.0029
GLN 2480.0038
GLY 2490.0040
LEU 2500.0028
ALA 2510.0035
GLY 2520.0035
LEU 2530.0024
GLU 2540.0024
VAL 2550.0016
HIS 2560.0023
ARG 2570.0018
LEU 2580.0011
VAL 2590.0018
LEU 2600.0020
GLY 2610.0030
GLU 2620.0043
PHE 2630.0057
ARG 2640.0064
ASN 2650.0075
GLU 2660.0070
GLY 2670.0069
ASN 2680.0057
LEU 2690.0047
GLU 2700.0050
LYS 2710.0037
PHE 2720.0021
ASP 2730.0013
LYS 2740.0006
SER 2750.0017
ALA 2760.0016
LEU 2770.0009
GLU 2780.0017
GLY 2790.0023
LEU 2800.0015
CYS 2810.0024
ASN 2820.0028
LEU 2830.0022
THR 2840.0023
ILE 2850.0017
GLU 2860.0024
GLU 2870.0020
PHE 2880.0016
ARG 2890.0019
LEU 2900.0020
ALA 2910.0027
TYR 2920.0038
LEU 2930.0031
ASP 2940.0039
TYR 2950.0028
TYR 2960.0029
LEU 2970.0027
ASP 2980.0031
GLY 2990.0030
ILE 3000.0026
ILE 3010.0029
ASP 3020.0021
LEU 3030.0014
PHE 3040.0017
ASN 3050.0022
CYS 3060.0019
LEU 3070.0019
THR 3080.0025
ASN 3090.0026
VAL 3100.0022
SER 3110.0024
SER 3120.0022
PHE 3130.0021
SER 3140.0021
LEU 3150.0024
VAL 3160.0028
SER 3170.0038
VAL 3180.0034
THR 3190.0038
ILE 3200.0037
GLU 3210.0043
ARG 3220.0044
VAL 3230.0042
LYS 3240.0047
ASP 3250.0040
PHE 3260.0037
SER 3270.0043
TYR 3280.0040
ASN 3290.0038
PHE 3300.0032
GLY 3310.0030
TRP 3320.0024
GLN 3330.0022
HIS 3340.0018
LEU 3350.0021
GLU 3360.0021
LEU 3370.0027
VAL 3380.0030
ASN 3390.0037
CYS 3400.0036
LYS 3410.0043
PHE 3420.0044
GLY 3430.0052
GLN 3440.0050
PHE 3450.0043
PRO 3460.0039
THR 3470.0042
LEU 3480.0035
LYS 3490.0037
LEU 3500.0031
LYS 3510.0033
SER 3520.0025
LEU 3530.0021
LYS 3540.0016
ARG 3550.0014
LEU 3560.0017
THR 3570.0016
PHE 3580.0024
THR 3590.0028
SER 3600.0037
ASN 3610.0040
LYS 3620.0047
GLY 3630.0050
GLY 3640.0050
ASN 3650.0043
ALA 3660.0043
PHE 3670.0035
SER 3680.0038
GLU 3690.0035
VAL 3700.0028
ASP 3710.0029
LEU 3720.0023
PRO 3730.0025
SER 3740.0022
LEU 3750.0019
GLU 3760.0020
PHE 3770.0019
LEU 3780.0012
ASP 3790.0016
LEU 3800.0019
SER 3810.0025
ARG 3820.0032
ASN 3830.0033
GLY 3840.0033
LEU 3850.0029
SER 3860.0027
PHE 3870.0021
LYS 3880.0028
GLY 3890.0030
CYS 3900.0021
CYS 3910.0022
SER 3920.0028
GLN 3930.0031
SER 3940.0035
ASP 3950.0027
PHE 3960.0022
GLY 3970.0026
THR 3980.0025
ILE 3990.0032
SER 4000.0032
LEU 4010.0028
LYS 4020.0035
TYR 4030.0030
LEU 4040.0020
ASP 4050.0021
LEU 4060.0016
SER 4070.0025
PHE 4080.0030
ASN 4090.0026
GLY 4100.0025
VAL 4110.0020
ILE 4120.0017
THR 4130.0023
MET 4140.0022
SER 4150.0031
SER 4160.0032
ASN 4170.0032
PHE 4180.0031
LEU 4190.0041
GLY 4200.0045
LEU 4210.0037
GLU 4220.0048
GLN 4230.0049
LEU 4240.0040
GLU 4250.0046
HIS 4260.0040
LEU 4270.0029
ASP 4280.0027
PHE 4290.0020
GLN 4300.0026
HIS 4310.0026
SER 4320.0018
ASN 4330.0018
LEU 4340.0014
LYS 4350.0022
GLN 4360.0029
MET 4370.0018
SER 4380.0022
GLU 4390.0031
PHE 4400.0031
SER 4410.0029
VAL 4420.0026
PHE 4430.0030
LEU 4440.0039
SER 4450.0045
LEU 4460.0042
ARG 4470.0054
ASN 4480.0056
LEU 4490.0046
ILE 4500.0051
TYR 4510.0045
LEU 4520.0034
ASP 4530.0032
ILE 4540.0025
SER 4550.0028
HIS 4560.0025
THR 4570.0011
HIS 4580.0011
THR 4590.0009
ARG 4600.0011
VAL 4610.0011
ALA 4620.0018
PHE 4630.0019
ASN 4640.0019
GLY 4650.0023
ILE 4660.0020
PHE 4670.0029
ASN 4680.0035
GLY 4690.0041
LEU 4700.0040
SER 4710.0047
SER 4720.0052
LEU 4730.0045
GLU 4740.0048
VAL 4750.0044
LEU 4760.0037
LYS 4770.0034
MET 4780.0028
ALA 4790.0030
GLY 4800.0027
ASN 4810.0022
SER 4820.0022
PHE 4830.0021
GLN 4840.0019
GLU 4850.0022
ASN 4860.0024
PHE 4870.0024
LEU 4880.0024
PRO 4890.0027
ASP 4900.0028
ILE 4910.0030
PHE 4920.0031
THR 4930.0032
GLU 4940.0036
LEU 4950.0035
ARG 4960.0034
ASN 4970.0040
LEU 4980.0037
THR 4990.0038
PHE 5000.0037
LEU 5010.0032
ASP 5020.0032
LEU 5030.0030
SER 5040.0030
GLN 5050.0029
CYS 5060.0028
GLN 5070.0024
LEU 5080.0024
GLU 5090.0024
GLN 5100.0024
LEU 5110.0025
SER 5120.0035
PRO 5130.0035
THR 5140.0035
ALA 5150.0033
PHE 5160.0029
ASN 5170.0032
SER 5180.0034
LEU 5190.0029
SER 5200.0026
SER 5210.0026
LEU 5220.0027
GLN 5230.0024
VAL 5240.0025
LEU 5250.0025
ASN 5260.0025
MET 5270.0026
SER 5280.0024
HIS 5290.0027
ASN 5300.0028
ASN 5310.0028
PHE 5320.0027
PHE 5330.0023
SER 5340.0018
LEU 5350.0017
ASP 5360.0027
THR 5370.0030
PHE 5380.0040
PRO 5390.0038
TYR 5400.0031
LYS 5410.0040
CYS 5420.0034
LEU 5430.0027
ASN 5440.0028
SER 5450.0022
LEU 5460.0020
GLN 5470.0018
VAL 5480.0014
LEU 5490.0016
ASP 5500.0014
TYR 5510.0015
SER 5520.0016
LEU 5530.0028
ASN 5540.0030
HIS 5550.0031
ILE 5560.0019
MET 5570.0022
THR 5580.0008
SER 5590.0014
LYS 5600.0023
LYS 5610.0036
GLN 5620.0041
GLU 5630.0048
LEU 5640.0038
GLN 5650.0052
HIS 5660.0050
PHE 5670.0035
PRO 5680.0035
SER 5690.0037
SER 5700.0029
LEU 5710.0025
ALA 5720.0025
PHE 5730.0015
LEU 5740.0011
ASN 5750.0007
LEU 5760.0010
THR 5770.0020
GLN 5780.0034
ASN 5790.0029
ASP 5800.0041
PHE 5810.0033
ALA 5820.0043
CYS 5830.0054
THR 5840.0060
CYS 5850.0062
GLU 5860.0045
HIS 5870.0031
GLN 5880.0049
SER 5890.0043
PHE 5900.0030
LEU 5910.0045
GLN 5920.0060
TRP 5930.0051
ILE 5940.0045
LYS 5950.0065
ASP 5960.0071
GLN 5970.0051
ARG 5980.0053
GLN 5990.0052
LEU 6000.0035
LEU 6010.0028
VAL 6020.0024
GLU 6030.0032
VAL 6040.0042
GLU 6050.0050
ARG 6060.0041
MET 6070.0041
GLU 6080.0056
CYS 6090.0059
ALA 6100.0064
THR 6110.0066
PRO 6120.0070
SER 6130.0091
ASP 6140.0096
LYS 6150.0075
GLN 6160.0071
GLY 6170.0086
MET 6180.0085
PRO 6190.0071
VAL 6200.0058
LEU 6210.0068
SER 6220.0084
LEU 6230.0090
ASN 6240.0112
ILE 6250.0104
THR 6260.0131
CYS 6270.0233
GLU 10.0095
ALA 20.0086
ALA 30.0068
ALA 40.0044
LYS 50.0013
MET 60.0033
GLN 70.0022
ARG 80.0053
LEU 90.0072
VAL 100.0075
LEU 110.0069
LEU 120.0086
LEU 130.0079
ALA 140.0064
ILE 150.0078
SER 160.0060
LEU 170.0043
LEU 180.0034
LEU 190.0034
TYR 200.0027
GLN 210.0014
ASP 220.0016
LEU 230.0015
PRO 240.0024
VAL 250.0027
ARG 260.0020
SER 270.0018
GLU 280.0016
PHE 290.0022
GLU 300.0016
LEU 310.0004
ASP 320.0008
ARG 330.0006
ILE 340.0008
CYS 350.0018
GLY 360.0025
TYR 370.0032
GLY 380.0020
THR 390.0026
ALA 400.0010
ARG 410.0008
CYS 420.0031
ARG 430.0049
LYS 440.0074
LYS 450.0065
CYS 460.0033
ARG 470.0040
SER 480.0043
GLN 490.0040
GLU 500.0028
TYR 510.0021
ARG 520.0027
ILE 530.0034
GLY 540.0060
ARG 550.0077
CYS 560.0065
PRO 570.0085
ASN 580.0091
THR 590.0105
TYR 600.0082
ALA 610.0046
CYS 620.0029
CYS 630.0020
LEU 640.0005
ARG 650.0021
LYS 660.0041
TRP 670.0040
ASP 680.0036
GLU 690.0035
SER 700.0031
LEU 710.0038
LEU 720.0033
ASN 730.0026
ARG 740.0033
THR 750.0036
LYS 760.0032
PRO 770.0051
GLU 780.0051
ALA 790.0068
ALA 800.0079
ALA 810.0189
LYS 820.0145
LYS 830.0098
GLU 840.0164
MET 850.0106
ASN 860.0139
LEU 870.0124
SER 880.0106
VAL 890.0107
GLY 900.0079
LEU 910.0095
GLY 920.0085
GLY 930.0101
GLY 940.0113
SER 950.0122
ASN 960.0136
LEU 970.0146
SER 980.0172
VAL 990.0191
GLY 1000.0224
LEU 1010.0204
GLY 1020.0187
GLU 1030.0230
ILE 1040.0249
GLY 1050.0321
GLY 1060.0405
GLY 1070.0291
SER 1080.0234
LYS 1090.0179
LEU 1100.0192
LEU 1110.0266
ASP 1120.0250
ILE 1130.0190
ASN 1140.0213
LEU 1150.0174
GLY 1160.0552
ARG 1170.0745
GLY 1180.0662
GLY 1190.0525
GLY 1200.0317
SER 1210.0120
MET 1220.0085
VAL 1230.0051
ASP 1240.0090
LEU 1250.0131
THR 1260.0162
PHE 1270.0178
GLY 1280.0225
GLY 1290.0255
VAL 1300.0297
GLY 1310.0318
GLY 1320.0364
GLY 1330.0298
SER 1340.0334
THR 1350.0271
PHE 1360.0166
THR 1370.0165
PHE 1380.0116
PHE 1390.0148
PRO 1400.0182
LEU 1410.0215
VAL 1420.0472
ILE 1430.0664
GLY 1440.0932
GLY 1450.1194
GLY 1460.0960
SER 1470.0668
ASP 1480.0353
ALA 1490.0307
MET 1500.0149
TYR 1510.0183
LEU 1520.0124
GLY 1530.0084
PHE 1540.0117
ALA 1550.0173
ALA 1560.0393
GLY 1570.0450
GLY 1580.0560
GLY 1590.0472
SER 1600.0368
ALA 1610.0132
GLY 1620.0045
GLY 1630.0066
GLU 1640.0139
ASN 1650.0120
HIS 1660.0154
VAL 1670.0120
ALA 1680.0098
PHE 1690.0071
GLY 1700.0075
PRO 1710.0393
GLY 1720.0385
PRO 1730.0323
GLY 1740.0171
VAL 1750.0079
ASP 1760.0122
LEU 1770.0099
THR 1780.0124
PHE 1790.0105
GLY 1800.0129
GLY 1810.0199
VAL 1820.0179
GLN 1830.0164
PHE 1840.0130
ALA 1850.0128
MET 1860.0180
VAL 1870.0202
ASN 1880.0142
ASN 1890.0143
GLY 1900.0158
PRO 1910.0174
GLY 1920.0151
PRO 1930.0214
GLY 1940.0220
GLU 1950.0168
SER 1960.0237
PHE 1970.0151
THR 1980.0138
ALA 1990.0158
GLN 2000.0019
PRO 2010.0033
ALA 2020.0097
ASP 2030.0164
MET 2040.0129
GLN 2050.0102
ALA 2060.0064
GLY 2070.0087
ILE 2080.0107
LYS 2090.0131
GLY 2100.0169
PRO 2110.0146
GLY 2120.0187
PRO 2130.0275
GLY 2140.0126
GLY 2150.0280
SER 2160.0191
ILE 2170.0330
GLN 2180.0192
VAL 2190.0185
ILE 2200.0171
ASN 2210.0104
GLY 2220.0107
SER 2230.0149
THR 2240.0219
ILE 2250.0236
GLY 2260.0179
THR 2270.0242
GLY 2280.0274
SER 2290.0329
LYS 2300.0288
LYS 2310.0288
THR 2320.0318
ILE 2330.0232
LEU 2340.0251
ILE 2350.0256
TYR 2360.0250
SER 2370.0219
ILE 2380.0208
ILE 2390.0159
GLY 2400.0161
VAL 2410.0112
LYS 2420.0076
LYS 2430.0057
GLY 2440.0049
THR 2450.0071
LEU 2460.0151
ALA 2470.0147
TRP 2480.0173
ALA 2490.0168
ARG 2500.0197
THR 2510.0237
GLY 2520.0227
PHE 2530.0194
SER 2540.0245
PRO 2550.0264
ALA 2560.0191
LYS 2570.0250
LYS 2580.0235
LEU 2590.0286
ASN 2600.0331
ALA 2610.0438
GLY 2620.0327
VAL 2630.0266
VAL 2640.0262
ARG 2650.0136
VAL 2660.0103
PHE 2670.0099
PHE 2680.0106
LEU 2690.0084
ASN 2700.0116
GLN 2710.0051
LYS 2720.0028
LYS 2730.0044
ALA 2740.0040
LYS 2750.0013
ASP 2760.0021
VAL 2770.0026
LEU 2780.0019
ARG 2790.0010
LYS 2800.0021
THR 2810.0028
SER 2820.0036
ARG 2830.0062
PRO 2840.0094
MET 2850.0143
VAL 2860.0110
ASP 2870.0062
LEU 2880.0069
THR 2890.0125
PHE 2900.0177
GLY 2910.0115
GLY 2920.0261

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.