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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 60  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0987
GLU 270.0055
PRO 280.0054
CYS 290.0046
VAL 300.0057
GLU 310.0061
VAL 320.0068
VAL 330.0067
PRO 340.0063
ASN 350.0047
ILE 360.0045
THR 370.0045
TYR 380.0037
GLN 390.0036
CYS 400.0025
MET 410.0025
GLU 420.0022
LEU 430.0022
ASN 440.0016
PHE 450.0014
TYR 460.0014
LYS 470.0017
ILE 480.0011
PRO 490.0021
ASP 500.0029
ASN 510.0040
LEU 520.0031
PRO 530.0028
PHE 540.0018
SER 550.0021
THR 560.0024
LYS 570.0027
ASN 580.0029
LEU 590.0021
ASP 600.0022
LEU 610.0013
SER 620.0015
PHE 630.0012
ASN 640.0008
PRO 650.0008
LEU 660.0012
ARG 670.0014
HIS 680.0015
LEU 690.0016
GLY 700.0017
SER 710.0018
TYR 720.0019
SER 730.0016
PHE 740.0015
PHE 750.0015
SER 760.0014
PHE 770.0011
PRO 780.0015
GLU 790.0016
LEU 800.0017
GLN 810.0024
VAL 820.0025
LEU 830.0021
ASP 840.0022
LEU 850.0020
SER 860.0022
ARG 870.0014
CYS 880.0017
GLU 890.0014
ILE 900.0017
GLN 910.0017
THR 920.0018
ILE 930.0018
GLU 940.0018
ASP 950.0018
GLY 960.0019
ALA 970.0020
TYR 980.0020
GLN 990.0021
SER 1000.0020
LEU 1010.0020
SER 1020.0022
HIS 1030.0022
LEU 1040.0022
SER 1050.0022
THR 1060.0021
LEU 1070.0022
ILE 1080.0021
LEU 1090.0021
THR 1100.0020
GLY 1110.0019
ASN 1120.0019
PRO 1130.0019
ILE 1140.0018
GLN 1150.0018
SER 1160.0017
LEU 1170.0018
ALA 1180.0017
LEU 1190.0014
GLY 1200.0016
ALA 1210.0018
PHE 1220.0018
SER 1230.0019
GLY 1240.0020
LEU 1250.0019
SER 1260.0020
SER 1270.0018
LEU 1280.0017
GLN 1290.0015
LYS 1300.0015
LEU 1310.0015
VAL 1320.0018
ALA 1330.0018
VAL 1340.0018
GLU 1350.0018
THR 1360.0019
ASN 1370.0026
LEU 1380.0022
ALA 1390.0025
SER 1400.0023
LEU 1410.0018
GLU 1420.0026
ASN 1430.0026
PHE 1440.0018
PRO 1450.0014
ILE 1460.0010
GLY 1470.0013
HIS 1480.0010
LEU 1490.0008
LYS 1500.0011
THR 1510.0012
LEU 1520.0010
LYS 1530.0011
GLU 1540.0011
LEU 1550.0008
ASN 1560.0010
VAL 1570.0009
ALA 1580.0014
HIS 1590.0022
ASN 1600.0022
LEU 1610.0027
ILE 1620.0031
GLN 1630.0038
SER 1640.0037
PHE 1650.0031
LYS 1660.0038
LEU 1670.0031
PRO 1680.0032
GLU 1690.0036
TYR 1700.0025
PHE 1710.0025
SER 1720.0029
ASN 1730.0024
LEU 1740.0018
THR 1750.0025
ASN 1760.0022
LEU 1770.0011
GLU 1780.0015
HIS 1790.0012
LEU 1800.0006
ASP 1810.0007
LEU 1820.0007
SER 1830.0013
SER 1840.0023
ASN 1850.0025
LYS 1860.0033
ILE 1870.0033
GLN 1880.0041
SER 1890.0042
ILE 1900.0040
TYR 1910.0052
CYS 1920.0057
THR 1930.0061
ASP 1940.0049
LEU 1950.0047
ARG 1960.0057
VAL 1970.0047
LEU 1980.0045
HIS 1990.0058
GLN 2000.0059
MET 2010.0054
PRO 2020.0055
LEU 2030.0055
LEU 2040.0041
ASN 2050.0036
LEU 2060.0022
SER 2070.0020
LEU 2080.0012
ASP 2090.0008
LEU 2100.0004
SER 2110.0011
LEU 2120.0021
ASN 2130.0021
PRO 2140.0031
MET 2150.0027
ASN 2160.0037
PHE 2170.0040
ILE 2180.0037
GLN 2190.0048
PRO 2200.0050
GLY 2210.0055
ALA 2220.0049
PHE 2230.0043
LYS 2240.0054
GLU 2250.0060
ILE 2260.0049
ARG 2270.0040
LEU 2280.0031
HIS 2290.0034
LYS 2300.0025
LEU 2310.0015
THR 2320.0012
LEU 2330.0006
ARG 2340.0012
ASN 2350.0016
ASN 2360.0013
PHE 2370.0017
ASP 2380.0026
SER 2390.0023
LEU 2400.0015
ASN 2410.0018
VAL 2420.0023
MET 2430.0012
LYS 2440.0013
THR 2450.0023
CYS 2460.0020
ILE 2470.0015
GLN 2480.0024
GLY 2490.0030
LEU 2500.0027
ALA 2510.0034
GLY 2520.0040
LEU 2530.0033
GLU 2540.0038
VAL 2550.0030
HIS 2560.0038
ARG 2570.0031
LEU 2580.0024
VAL 2590.0022
LEU 2600.0016
GLY 2610.0019
GLU 2620.0018
PHE 2630.0023
ARG 2640.0028
ASN 2650.0030
GLU 2660.0026
GLY 2670.0026
ASN 2680.0022
LEU 2690.0018
GLU 2700.0023
LYS 2710.0018
PHE 2720.0016
ASP 2730.0015
LYS 2740.0015
SER 2750.0009
ALA 2760.0009
LEU 2770.0012
GLU 2780.0012
GLY 2790.0013
LEU 2800.0018
CYS 2810.0023
ASN 2820.0028
LEU 2830.0026
THR 2840.0033
ILE 2850.0030
GLU 2860.0038
GLU 2870.0033
PHE 2880.0029
ARG 2890.0029
LEU 2900.0026
ALA 2910.0028
TYR 2920.0023
LEU 2930.0021
ASP 2940.0022
TYR 2950.0020
TYR 2960.0024
LEU 2970.0025
ASP 2980.0026
GLY 2990.0026
ILE 3000.0025
ILE 3010.0025
ASP 3020.0024
LEU 3030.0023
PHE 3040.0025
ASN 3050.0025
CYS 3060.0023
LEU 3070.0027
THR 3080.0027
ASN 3090.0028
VAL 3100.0029
SER 3110.0031
SER 3120.0032
PHE 3130.0030
SER 3140.0031
LEU 3150.0030
VAL 3160.0030
SER 3170.0029
VAL 3180.0028
THR 3190.0027
ILE 3200.0026
GLU 3210.0026
ARG 3220.0023
VAL 3230.0023
LYS 3240.0023
ASP 3250.0023
PHE 3260.0023
SER 3270.0022
TYR 3280.0023
ASN 3290.0023
PHE 3300.0025
GLY 3310.0025
TRP 3320.0025
GLN 3330.0024
HIS 3340.0024
LEU 3350.0024
GLU 3360.0025
LEU 3370.0026
VAL 3380.0029
ASN 3390.0031
CYS 3400.0027
LYS 3410.0026
PHE 3420.0022
GLY 3430.0021
GLN 3440.0019
PHE 3450.0019
PRO 3460.0018
THR 3470.0017
LEU 3480.0017
LYS 3490.0016
LEU 3500.0018
LYS 3510.0018
SER 3520.0020
LEU 3530.0018
LYS 3540.0015
ARG 3550.0015
LEU 3560.0016
THR 3570.0019
PHE 3580.0020
THR 3590.0025
SER 3600.0030
ASN 3610.0026
LYS 3620.0032
GLY 3630.0030
GLY 3640.0027
ASN 3650.0024
ALA 3660.0024
PHE 3670.0021
SER 3680.0018
GLU 3690.0015
VAL 3700.0012
ASP 3710.0011
LEU 3720.0012
PRO 3730.0013
SER 3740.0014
LEU 3750.0011
GLU 3760.0009
PHE 3770.0008
LEU 3780.0010
ASP 3790.0014
LEU 3800.0016
SER 3810.0021
ARG 3820.0030
ASN 3830.0030
GLY 3840.0038
LEU 3850.0032
SER 3860.0039
PHE 3870.0036
LYS 3880.0039
GLY 3890.0037
CYS 3900.0030
CYS 3910.0024
SER 3920.0020
GLN 3930.0015
SER 3940.0017
ASP 3950.0018
PHE 3960.0012
GLY 3970.0005
THR 3980.0005
ILE 3990.0008
SER 4000.0007
LEU 4010.0005
LYS 4020.0007
TYR 4030.0009
LEU 4040.0013
ASP 4050.0016
LEU 4060.0020
SER 4070.0023
PHE 4080.0031
ASN 4090.0034
GLY 4100.0042
VAL 4110.0044
ILE 4120.0035
THR 4130.0036
MET 4140.0033
SER 4150.0036
SER 4160.0033
ASN 4170.0026
PHE 4180.0021
LEU 4190.0022
GLY 4200.0017
LEU 4210.0014
GLU 4220.0014
GLN 4230.0010
LEU 4240.0010
GLU 4250.0008
HIS 4260.0010
LEU 4270.0018
ASP 4280.0019
PHE 4290.0021
GLN 4300.0021
HIS 4310.0023
SER 4320.0031
ASN 4330.0033
LEU 4340.0030
LYS 4350.0032
GLN 4360.0032
MET 4370.0026
SER 4380.0025
GLU 4390.0029
PHE 4400.0027
SER 4410.0023
VAL 4420.0024
PHE 4430.0020
LEU 4440.0021
SER 4450.0020
LEU 4460.0016
ARG 4470.0014
ASN 4480.0010
LEU 4490.0011
ILE 4500.0008
TYR 4510.0010
LEU 4520.0015
ASP 4530.0016
ILE 4540.0016
SER 4550.0016
HIS 4560.0017
THR 4570.0028
HIS 4580.0025
THR 4590.0020
ARG 4600.0014
VAL 4610.0011
ALA 4620.0013
PHE 4630.0014
ASN 4640.0011
GLY 4650.0015
ILE 4660.0016
PHE 4670.0013
ASN 4680.0014
GLY 4690.0015
LEU 4700.0012
SER 4710.0011
SER 4720.0008
LEU 4730.0008
GLU 4740.0006
VAL 4750.0007
LEU 4760.0009
LYS 4770.0011
MET 4780.0010
ALA 4790.0011
GLY 4800.0012
ASN 4810.0010
SER 4820.0008
PHE 4830.0004
GLN 4840.0003
GLU 4850.0006
ASN 4860.0007
PHE 4870.0006
LEU 4880.0004
PRO 4890.0006
ASP 4900.0008
ILE 4910.0007
PHE 4920.0006
THR 4930.0008
GLU 4940.0010
LEU 4950.0008
ARG 4960.0008
ASN 4970.0007
LEU 4980.0006
THR 4990.0005
PHE 5000.0006
LEU 5010.0006
ASP 5020.0006
LEU 5030.0005
SER 5040.0005
GLN 5050.0006
CYS 5060.0005
GLN 5070.0007
LEU 5080.0007
GLU 5090.0010
GLN 5100.0011
LEU 5110.0010
SER 5120.0010
PRO 5130.0012
THR 5140.0012
ALA 5150.0009
PHE 5160.0009
ASN 5170.0010
SER 5180.0010
LEU 5190.0008
SER 5200.0009
SER 5210.0007
LEU 5220.0007
GLN 5230.0007
VAL 5240.0007
LEU 5250.0007
ASN 5260.0007
MET 5270.0007
SER 5280.0006
HIS 5290.0006
ASN 5300.0008
ASN 5310.0009
PHE 5320.0011
PHE 5330.0011
SER 5340.0011
LEU 5350.0010
ASP 5360.0011
THR 5370.0010
PHE 5380.0010
PRO 5390.0011
TYR 5400.0009
LYS 5410.0009
CYS 5420.0010
LEU 5430.0009
ASN 5440.0009
SER 5450.0008
LEU 5460.0008
GLN 5470.0009
VAL 5480.0009
LEU 5490.0008
ASP 5500.0009
TYR 5510.0009
SER 5520.0009
LEU 5530.0010
ASN 5540.0012
HIS 5550.0013
ILE 5560.0012
MET 5570.0016
THR 5580.0014
SER 5590.0012
LYS 5600.0014
LYS 5610.0012
GLN 5620.0011
GLU 5630.0009
LEU 5640.0008
GLN 5650.0006
HIS 5660.0007
PHE 5670.0008
PRO 5680.0007
SER 5690.0008
SER 5700.0008
LEU 5710.0008
ALA 5720.0010
PHE 5730.0009
LEU 5740.0007
ASN 5750.0009
LEU 5760.0009
THR 5770.0011
GLN 5780.0015
ASN 5790.0016
ASP 5800.0019
PHE 5810.0017
ALA 5820.0027
CYS 5830.0025
THR 5840.0035
CYS 5850.0040
GLU 5860.0040
HIS 5870.0027
GLN 5880.0026
SER 5890.0021
PHE 5900.0014
LEU 5910.0017
GLN 5920.0019
TRP 5930.0013
ILE 5940.0011
LYS 5950.0014
ASP 5960.0015
GLN 5970.0009
ARG 5980.0008
GLN 5990.0010
LEU 6000.0007
LEU 6010.0005
VAL 6020.0009
GLU 6030.0010
VAL 6040.0009
GLU 6050.0012
ARG 6060.0017
MET 6070.0014
GLU 6080.0018
CYS 6090.0022
ALA 6100.0027
THR 6110.0031
PRO 6120.0034
SER 6130.0037
ASP 6140.0033
LYS 6150.0026
GLN 6160.0026
GLY 6170.0025
MET 6180.0021
PRO 6190.0015
VAL 6200.0015
LEU 6210.0012
SER 6220.0015
LEU 6230.0024
ASN 6240.0035
ILE 6250.0038
THR 6260.0051
CYS 6270.0093
GLU 10.0059
ALA 20.0056
ALA 30.0063
ALA 40.0030
LYS 50.0020
MET 60.0046
GLN 70.0033
ARG 80.0032
LEU 90.0058
VAL 100.0067
LEU 110.0053
LEU 120.0062
LEU 130.0062
ALA 140.0051
ILE 150.0054
SER 160.0038
LEU 170.0032
LEU 180.0032
LEU 190.0032
TYR 200.0026
GLN 210.0024
ASP 220.0022
LEU 230.0022
PRO 240.0024
VAL 250.0028
ARG 260.0033
SER 270.0023
GLU 280.0026
PHE 290.0029
GLU 300.0021
LEU 310.0008
ASP 320.0007
ARG 330.0006
ILE 340.0012
CYS 350.0021
GLY 360.0019
TYR 370.0015
GLY 380.0015
THR 390.0023
ALA 400.0020
ARG 410.0008
CYS 420.0027
ARG 430.0041
LYS 440.0068
LYS 450.0057
CYS 460.0022
ARG 470.0020
SER 480.0017
GLN 490.0014
GLU 500.0014
TYR 510.0017
ARG 520.0042
ILE 530.0054
GLY 540.0073
ARG 550.0082
CYS 560.0065
PRO 570.0079
ASN 580.0084
THR 590.0101
TYR 600.0079
ALA 610.0047
CYS 620.0035
CYS 630.0025
LEU 640.0019
ARG 650.0011
LYS 660.0011
TRP 670.0012
ASP 680.0010
GLU 690.0012
SER 700.0011
LEU 710.0019
LEU 720.0016
ASN 730.0016
ARG 740.0022
THR 750.0027
LYS 760.0074
PRO 770.0135
GLU 780.0118
ALA 790.0183
ALA 800.0234
ALA 810.0480
LYS 820.0449
LYS 830.0389
GLU 840.0352
MET 850.0297
ASN 860.0173
LEU 870.0140
SER 880.0046
VAL 890.0076
GLY 900.0170
LEU 910.0328
GLY 920.0612
GLY 930.0987
GLY 940.0976
SER 950.0751
ASN 960.0304
LEU 970.0267
SER 980.0181
VAL 990.0266
GLY 1000.0309
LEU 1010.0365
GLY 1020.0344
GLU 1030.0199
ILE 1040.0268
GLY 1050.0362
GLY 1060.0827
GLY 1070.0634
SER 1080.0485
LYS 1090.0193
LEU 1100.0087
LEU 1110.0063
ASP 1120.0126
ILE 1130.0120
ASN 1140.0244
LEU 1150.0240
GLY 1160.0362
ARG 1170.0406
GLY 1180.0255
GLY 1190.0161
GLY 1200.0142
SER 1210.0079
MET 1220.0106
VAL 1230.0105
ASP 1240.0134
LEU 1250.0150
THR 1260.0193
PHE 1270.0231
GLY 1280.0302
GLY 1290.0327
VAL 1300.0370
GLY 1310.0410
GLY 1320.0232
GLY 1330.0031
SER 1340.0154
THR 1350.0188
PHE 1360.0206
THR 1370.0215
PHE 1380.0158
PHE 1390.0170
PRO 1400.0124
LEU 1410.0092
VAL 1420.0186
ILE 1430.0208
GLY 1440.0370
GLY 1450.0446
GLY 1460.0509
SER 1470.0456
ASP 1480.0382
ALA 1490.0325
MET 1500.0210
TYR 1510.0157
LEU 1520.0162
GLY 1530.0210
PHE 1540.0248
ALA 1550.0321
ALA 1560.0458
GLY 1570.0468
GLY 1580.0427
GLY 1590.0354
SER 1600.0283
ALA 1610.0290
GLY 1620.0280
GLY 1630.0279
GLU 1640.0225
ASN 1650.0107
HIS 1660.0136
VAL 1670.0117
ALA 1680.0127
PHE 1690.0138
GLY 1700.0131
PRO 1710.0100
GLY 1720.0067
PRO 1730.0091
GLY 1740.0064
VAL 1750.0068
ASP 1760.0057
LEU 1770.0028
THR 1780.0124
PHE 1790.0151
GLY 1800.0254
GLY 1810.0343
VAL 1820.0295
GLN 1830.0198
PHE 1840.0138
ALA 1850.0079
MET 1860.0117
VAL 1870.0083
ASN 1880.0036
ASN 1890.0055
GLY 1900.0120
PRO 1910.0423
GLY 1920.0225
PRO 1930.0150
GLY 1940.0173
GLU 1950.0099
SER 1960.0041
PHE 1970.0058
THR 1980.0073
ALA 1990.0134
GLN 2000.0088
PRO 2010.0072
ALA 2020.0084
ASP 2030.0072
MET 2040.0141
GLN 2050.0181
ALA 2060.0122
GLY 2070.0074
ILE 2080.0098
LYS 2090.0032
GLY 2100.0052
PRO 2110.0094
GLY 2120.0145
PRO 2130.0265
GLY 2140.0216
GLY 2150.0171
SER 2160.0205
ILE 2170.0452
GLN 2180.0292
VAL 2190.0530
ILE 2200.0552
ASN 2210.0555
GLY 2220.0460
SER 2230.0419
THR 2240.0380
ILE 2250.0293
GLY 2260.0147
THR 2270.0235
GLY 2280.0338
SER 2290.0500
LYS 2300.0365
LYS 2310.0297
THR 2320.0238
ILE 2330.0240
LEU 2340.0208
ILE 2350.0207
TYR 2360.0203
SER 2370.0205
ILE 2380.0186
ILE 2390.0165
GLY 2400.0163
VAL 2410.0108
LYS 2420.0088
LYS 2430.0091
GLY 2440.0062
THR 2450.0039
LEU 2460.0076
ALA 2470.0104
TRP 2480.0130
ALA 2490.0167
ARG 2500.0196
THR 2510.0215
GLY 2520.0161
PHE 2530.0121
SER 2540.0095
PRO 2550.0115
ALA 2560.0049
LYS 2570.0070
LYS 2580.0130
LEU 2590.0178
ASN 2600.0239
ALA 2610.0389
GLY 2620.0211
VAL 2630.0153
VAL 2640.0081
ARG 2650.0128
VAL 2660.0080
PHE 2670.0087
PHE 2680.0032
LEU 2690.0057
ASN 2700.0032
GLN 2710.0037
LYS 2720.0040
LYS 2730.0042
ALA 2740.0036
LYS 2750.0029
ASP 2760.0032
VAL 2770.0023
LEU 2780.0006
ARG 2790.0017
LYS 2800.0031
THR 2810.0047
SER 2820.0056
ARG 2830.0073
PRO 2840.0090
MET 2850.0103
VAL 2860.0097
ASP 2870.0032
LEU 2880.0052
THR 2890.0105
PHE 2900.0138
GLY 2910.0104
GLY 2920.0207

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.