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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 61  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0586
GLU 270.0186
PRO 280.0183
CYS 290.0147
VAL 300.0147
GLU 310.0146
VAL 320.0118
VAL 330.0132
PRO 340.0167
ASN 350.0158
ILE 360.0120
THR 370.0083
TYR 380.0086
GLN 390.0083
CYS 400.0095
MET 410.0101
GLU 420.0134
LEU 430.0141
ASN 440.0140
PHE 450.0108
TYR 460.0098
LYS 470.0078
ILE 480.0056
PRO 490.0091
ASP 500.0109
ASN 510.0145
LEU 520.0127
PRO 530.0141
PHE 540.0134
SER 550.0135
THR 560.0095
LYS 570.0074
ASN 580.0039
LEU 590.0023
ASP 600.0029
LEU 610.0046
SER 620.0060
PHE 630.0094
ASN 640.0087
PRO 650.0099
LEU 660.0066
ARG 670.0079
HIS 680.0057
LEU 690.0037
GLY 700.0030
SER 710.0051
TYR 720.0048
SER 730.0013
PHE 740.0033
PHE 750.0067
SER 760.0078
PHE 770.0069
PRO 780.0100
GLU 790.0096
LEU 800.0057
GLN 810.0064
VAL 820.0058
LEU 830.0050
ASP 840.0056
LEU 850.0061
SER 860.0080
ARG 870.0082
CYS 880.0065
GLU 890.0085
ILE 900.0072
GLN 910.0087
THR 920.0075
ILE 930.0069
GLU 940.0068
ASP 950.0083
GLY 960.0078
ALA 970.0055
TYR 980.0061
GLN 990.0081
SER 1000.0075
LEU 1010.0070
SER 1020.0096
HIS 1030.0086
LEU 1040.0073
SER 1050.0096
THR 1060.0097
LEU 1070.0093
ILE 1080.0096
LEU 1090.0092
THR 1100.0100
GLY 1110.0099
ASN 1120.0086
PRO 1130.0090
ILE 1140.0086
GLN 1150.0087
SER 1160.0079
LEU 1170.0089
ALA 1180.0090
LEU 1190.0094
GLY 1200.0090
ALA 1210.0086
PHE 1220.0089
SER 1230.0092
GLY 1240.0087
LEU 1250.0085
SER 1260.0095
SER 1270.0105
LEU 1280.0107
GLN 1290.0123
LYS 1300.0124
LEU 1310.0114
VAL 1320.0112
ALA 1330.0097
VAL 1340.0105
GLU 1350.0099
THR 1360.0084
ASN 1370.0057
LEU 1380.0042
ALA 1390.0044
SER 1400.0041
LEU 1410.0043
GLU 1420.0064
ASN 1430.0061
PHE 1440.0052
PRO 1450.0054
ILE 1460.0072
GLY 1470.0060
HIS 1480.0080
LEU 1490.0094
LYS 1500.0103
THR 1510.0122
LEU 1520.0120
LYS 1530.0131
GLU 1540.0127
LEU 1550.0113
ASN 1560.0112
VAL 1570.0077
ALA 1580.0090
HIS 1590.0102
ASN 1600.0079
LEU 1610.0080
ILE 1620.0089
GLN 1630.0116
SER 1640.0109
PHE 1650.0088
LYS 1660.0115
LEU 1670.0097
PRO 1680.0100
GLU 1690.0124
TYR 1700.0096
PHE 1710.0104
SER 1720.0126
ASN 1730.0125
LEU 1740.0112
THR 1750.0147
ASN 1760.0152
LEU 1770.0120
GLU 1780.0132
HIS 1790.0116
LEU 1800.0091
ASP 1810.0088
LEU 1820.0042
SER 1830.0074
SER 1840.0107
ASN 1850.0094
LYS 1860.0117
ILE 1870.0123
GLN 1880.0161
SER 1890.0161
ILE 1900.0147
TYR 1910.0198
CYS 1920.0219
THR 1930.0227
ASP 1940.0173
LEU 1950.0172
ARG 1960.0213
VAL 1970.0178
LEU 1980.0175
HIS 1990.0227
GLN 2000.0237
MET 2010.0226
PRO 2020.0239
LEU 2030.0248
LEU 2040.0191
ASN 2050.0182
LEU 2060.0124
SER 2070.0112
LEU 2080.0066
ASP 2090.0058
LEU 2100.0033
SER 2110.0072
LEU 2120.0116
ASN 2130.0104
PRO 2140.0143
MET 2150.0119
ASN 2160.0165
PHE 2170.0173
ILE 2180.0156
GLN 2190.0202
PRO 2200.0213
GLY 2210.0230
ALA 2220.0194
PHE 2230.0171
LYS 2240.0220
GLU 2250.0238
ILE 2260.0192
ARG 2270.0161
LEU 2280.0123
HIS 2290.0138
LYS 2300.0101
LEU 2310.0057
THR 2320.0045
LEU 2330.0027
ARG 2340.0064
ASN 2350.0087
ASN 2360.0080
PHE 2370.0093
ASP 2380.0133
SER 2390.0112
LEU 2400.0073
ASN 2410.0110
VAL 2420.0119
MET 2430.0070
LYS 2440.0087
THR 2450.0128
CYS 2460.0104
ILE 2470.0081
GLN 2480.0127
GLY 2490.0142
LEU 2500.0119
ALA 2510.0156
GLY 2520.0173
LEU 2530.0137
GLU 2540.0149
VAL 2550.0116
HIS 2560.0140
ARG 2570.0106
LEU 2580.0075
VAL 2590.0066
LEU 2600.0045
GLY 2610.0065
GLU 2620.0096
PHE 2630.0135
ARG 2640.0152
ASN 2650.0179
GLU 2660.0157
GLY 2670.0151
ASN 2680.0115
LEU 2690.0081
GLU 2700.0088
LYS 2710.0046
PHE 2720.0031
ASP 2730.0026
LYS 2740.0056
SER 2750.0054
ALA 2760.0029
LEU 2770.0041
GLU 2780.0068
GLY 2790.0078
LEU 2800.0078
CYS 2810.0113
ASN 2820.0135
LEU 2830.0115
THR 2840.0130
ILE 2850.0110
GLU 2860.0135
GLU 2870.0108
PHE 2880.0090
ARG 2890.0087
LEU 2900.0080
ALA 2910.0089
TYR 2920.0107
LEU 2930.0087
ASP 2940.0097
TYR 2950.0073
TYR 2960.0096
LEU 2970.0111
ASP 2980.0126
GLY 2990.0126
ILE 3000.0113
ILE 3010.0122
ASP 3020.0104
LEU 3030.0087
PHE 3040.0091
ASN 3050.0103
CYS 3060.0089
LEU 3070.0085
THR 3080.0090
ASN 3090.0087
VAL 3100.0083
SER 3110.0083
SER 3120.0090
PHE 3130.0090
SER 3140.0090
LEU 3150.0094
VAL 3160.0098
SER 3170.0123
VAL 3180.0118
THR 3190.0128
ILE 3200.0133
GLU 3210.0147
ARG 3220.0144
VAL 3230.0132
LYS 3240.0141
ASP 3250.0128
PHE 3260.0114
SER 3270.0119
TYR 3280.0117
ASN 3290.0105
PHE 3300.0091
GLY 3310.0078
TRP 3320.0072
GLN 3330.0058
HIS 3340.0058
LEU 3350.0075
GLU 3360.0080
LEU 3370.0100
VAL 3380.0104
ASN 3390.0116
CYS 3400.0117
LYS 3410.0131
PHE 3420.0132
GLY 3430.0150
GLN 3440.0138
PHE 3450.0118
PRO 3460.0111
THR 3470.0108
LEU 3480.0088
LYS 3490.0083
LEU 3500.0068
LYS 3510.0064
SER 3520.0046
LEU 3530.0038
LYS 3540.0019
ARG 3550.0029
LEU 3560.0049
THR 3570.0069
PHE 3580.0084
THR 3590.0090
SER 3600.0105
ASN 3610.0111
LYS 3620.0126
GLY 3630.0135
GLY 3640.0132
ASN 3650.0112
ALA 3660.0107
PHE 3670.0092
SER 3680.0083
GLU 3690.0069
VAL 3700.0052
ASP 3710.0040
LEU 3720.0018
PRO 3730.0019
SER 3740.0032
LEU 3750.0034
GLU 3760.0057
PHE 3770.0042
LEU 3780.0048
ASP 3790.0057
LEU 3800.0065
SER 3810.0073
ARG 3820.0077
ASN 3830.0079
GLY 3840.0077
LEU 3850.0073
SER 3860.0070
PHE 3870.0069
LYS 3880.0076
GLY 3890.0088
CYS 3900.0082
CYS 3910.0088
SER 3920.0079
GLN 3930.0073
SER 3940.0061
ASP 3950.0061
PHE 3960.0059
GLY 3970.0042
THR 3980.0055
ILE 3990.0062
SER 4000.0075
LEU 4010.0082
LYS 4020.0078
TYR 4030.0071
LEU 4040.0068
ASP 4050.0064
LEU 4060.0063
SER 4070.0051
PHE 4080.0044
ASN 4090.0046
GLY 4100.0046
VAL 4110.0055
ILE 4120.0068
THR 4130.0081
MET 4140.0088
SER 4150.0103
SER 4160.0108
ASN 4170.0109
PHE 4180.0104
LEU 4190.0114
GLY 4200.0114
LEU 4210.0106
GLU 4220.0121
GLN 4230.0116
LEU 4240.0102
GLU 4250.0101
HIS 4260.0085
LEU 4270.0078
ASP 4280.0061
PHE 4290.0052
GLN 4300.0035
HIS 4310.0025
SER 4320.0036
ASN 4330.0047
LEU 4340.0061
LYS 4350.0078
GLN 4360.0094
MET 4370.0089
SER 4380.0097
GLU 4390.0118
PHE 4400.0119
SER 4410.0109
VAL 4420.0105
PHE 4430.0103
LEU 4440.0120
SER 4450.0129
LEU 4460.0116
ARG 4470.0130
ASN 4480.0127
LEU 4490.0107
ILE 4500.0100
TYR 4510.0082
LEU 4520.0068
ASP 4530.0051
ILE 4540.0044
SER 4550.0026
HIS 4560.0026
THR 4570.0036
HIS 4580.0048
THR 4590.0056
ARG 4600.0069
VAL 4610.0067
ALA 4620.0092
PHE 4630.0094
ASN 4640.0081
GLY 4650.0093
ILE 4660.0084
PHE 4670.0083
ASN 4680.0102
GLY 4690.0115
LEU 4700.0101
SER 4710.0111
SER 4720.0114
LEU 4730.0093
GLU 4740.0089
VAL 4750.0073
LEU 4760.0057
LYS 4770.0041
MET 4780.0033
ALA 4790.0032
GLY 4800.0037
ASN 4810.0042
SER 4820.0066
PHE 4830.0066
GLN 4840.0084
GLU 4850.0097
ASN 4860.0083
PHE 4870.0078
LEU 4880.0061
PRO 4890.0063
ASP 4900.0055
ILE 4910.0059
PHE 4920.0057
THR 4930.0063
GLU 4940.0079
LEU 4950.0071
ARG 4960.0075
ASN 4970.0086
LEU 4980.0070
THR 4990.0076
PHE 5000.0066
LEU 5010.0052
ASP 5020.0052
LEU 5030.0049
SER 5040.0057
GLN 5050.0060
CYS 5060.0056
GLN 5070.0077
LEU 5080.0076
GLU 5090.0086
GLN 5100.0082
LEU 5110.0072
SER 5120.0083
PRO 5130.0080
THR 5140.0067
ALA 5150.0063
PHE 5160.0056
ASN 5170.0055
SER 5180.0051
LEU 5190.0051
SER 5200.0057
SER 5210.0064
LEU 5220.0061
GLN 5230.0070
VAL 5240.0068
LEU 5250.0063
ASN 5260.0065
MET 5270.0075
SER 5280.0077
HIS 5290.0078
ASN 5300.0078
ASN 5310.0081
PHE 5320.0086
PHE 5330.0085
SER 5340.0086
LEU 5350.0086
ASP 5360.0093
THR 5370.0093
PHE 5380.0101
PRO 5390.0092
TYR 5400.0083
LYS 5410.0090
CYS 5420.0067
LEU 5430.0064
ASN 5440.0066
SER 5450.0064
LEU 5460.0066
GLN 5470.0073
VAL 5480.0073
LEU 5490.0075
ASP 5500.0075
TYR 5510.0078
SER 5520.0075
LEU 5530.0075
ASN 5540.0078
HIS 5550.0074
ILE 5560.0070
MET 5570.0059
THR 5580.0063
SER 5590.0077
LYS 5600.0093
LYS 5610.0109
GLN 5620.0107
GLU 5630.0111
LEU 5640.0094
GLN 5650.0103
HIS 5660.0106
PHE 5670.0088
PRO 5680.0076
SER 5690.0081
SER 5700.0069
LEU 5710.0072
ALA 5720.0075
PHE 5730.0073
LEU 5740.0069
ASN 5750.0068
LEU 5760.0063
THR 5770.0053
GLN 5780.0055
ASN 5790.0057
ASP 5800.0059
PHE 5810.0035
ALA 5820.0060
CYS 5830.0065
THR 5840.0088
CYS 5850.0092
GLU 5860.0062
HIS 5870.0018
GLN 5880.0044
SER 5890.0050
PHE 5900.0042
LEU 5910.0037
GLN 5920.0060
TRP 5930.0065
ILE 5940.0048
LYS 5950.0071
ASP 5960.0096
GLN 5970.0068
ARG 5980.0051
GLN 5990.0072
LEU 6000.0075
LEU 6010.0048
VAL 6020.0062
GLU 6030.0042
VAL 6040.0031
GLU 6050.0018
ARG 6060.0023
MET 6070.0010
GLU 6080.0042
CYS 6090.0065
ALA 6100.0095
THR 6110.0114
PRO 6120.0146
SER 6130.0185
ASP 6140.0192
LYS 6150.0147
GLN 6160.0139
GLY 6170.0105
MET 6180.0094
PRO 6190.0059
VAL 6200.0042
LEU 6210.0067
SER 6220.0098
LEU 6230.0109
ASN 6240.0158
ILE 6250.0149
THR 6260.0201
CYS 6270.0350
GLU 10.0492
ALA 20.0586
ALA 30.0453
ALA 40.0252
LYS 50.0396
MET 60.0447
GLN 70.0356
ARG 80.0331
LEU 90.0478
VAL 100.0522
LEU 110.0418
LEU 120.0458
LEU 130.0440
ALA 140.0400
ILE 150.0425
SER 160.0301
LEU 170.0245
LEU 180.0256
LEU 190.0262
TYR 200.0231
GLN 210.0164
ASP 220.0147
LEU 230.0142
PRO 240.0176
VAL 250.0226
ARG 260.0100
SER 270.0055
GLU 280.0068
PHE 290.0047
GLU 300.0023
LEU 310.0047
ASP 320.0060
ARG 330.0037
ILE 340.0076
CYS 350.0115
GLY 360.0096
TYR 370.0106
GLY 380.0089
THR 390.0088
ALA 400.0071
ARG 410.0044
CYS 420.0125
ARG 430.0183
LYS 440.0288
LYS 450.0244
CYS 460.0132
ARG 470.0159
SER 480.0175
GLN 490.0165
GLU 500.0122
TYR 510.0079
ARG 520.0107
ILE 530.0157
GLY 540.0261
ARG 550.0333
CYS 560.0290
PRO 570.0381
ASN 580.0390
THR 590.0437
TYR 600.0331
ALA 610.0181
CYS 620.0122
CYS 630.0075
LEU 640.0045
ARG 650.0088
LYS 660.0170
TRP 670.0164
ASP 680.0146
GLU 690.0140
SER 700.0125
LEU 710.0150
LEU 720.0153
ASN 730.0127
ARG 740.0133
THR 750.0156
LYS 760.0129
PRO 770.0138
GLU 780.0126
ALA 790.0137
ALA 800.0160
ALA 810.0059
LYS 820.0037
LYS 830.0015
GLU 840.0013
MET 850.0031
ASN 860.0027
LEU 870.0021
SER 880.0020
VAL 890.0014
GLY 900.0017
LEU 910.0018
GLY 920.0028
GLY 930.0037
GLY 940.0038
SER 950.0026
ASN 960.0021
LEU 970.0015
SER 980.0020
VAL 990.0020
GLY 1000.0027
LEU 1010.0016
GLY 1020.0012
GLU 1030.0009
ILE 1040.0018
GLY 1050.0022
GLY 1060.0036
GLY 1070.0032
SER 1080.0029
LYS 1090.0024
LEU 1100.0024
LEU 1110.0026
ASP 1120.0023
ILE 1130.0016
ASN 1140.0021
LEU 1150.0019
GLY 1160.0080
ARG 1170.0112
GLY 1180.0081
GLY 1190.0065
GLY 1200.0060
SER 1210.0026
MET 1220.0026
VAL 1230.0023
ASP 1240.0028
LEU 1250.0027
THR 1260.0037
PHE 1270.0038
GLY 1280.0043
GLY 1290.0042
VAL 1300.0048
GLY 1310.0074
GLY 1320.0083
GLY 1330.0073
SER 1340.0068
THR 1350.0052
PHE 1360.0034
THR 1370.0023
PHE 1380.0018
PHE 1390.0015
PRO 1400.0023
LEU 1410.0024
VAL 1420.0039
ILE 1430.0064
GLY 1440.0086
GLY 1450.0112
GLY 1460.0099
SER 1470.0067
ASP 1480.0036
ALA 1490.0035
MET 1500.0024
TYR 1510.0028
LEU 1520.0031
GLY 1530.0027
PHE 1540.0032
ALA 1550.0032
ALA 1560.0058
GLY 1570.0060
GLY 1580.0084
GLY 1590.0086
SER 1600.0093
ALA 1610.0066
GLY 1620.0055
GLY 1630.0034
GLU 1640.0034
ASN 1650.0026
HIS 1660.0029
VAL 1670.0028
ALA 1680.0029
PHE 1690.0030
GLY 1700.0032
PRO 1710.0047
GLY 1720.0060
PRO 1730.0077
GLY 1740.0059
VAL 1750.0036
ASP 1760.0029
LEU 1770.0015
THR 1780.0013
PHE 1790.0010
GLY 1800.0012
GLY 1810.0021
VAL 1820.0028
GLN 1830.0029
PHE 1840.0025
ALA 1850.0035
MET 1860.0026
VAL 1870.0041
ASN 1880.0021
ASN 1890.0022
GLY 1900.0014
PRO 1910.0030
GLY 1920.0015
PRO 1930.0027
GLY 1940.0026
GLU 1950.0017
SER 1960.0061
PHE 1970.0042
THR 1980.0058
ALA 1990.0074
GLN 2000.0023
PRO 2010.0017
ALA 2020.0034
ASP 2030.0051
MET 2040.0068
GLN 2050.0088
ALA 2060.0050
GLY 2070.0042
ILE 2080.0057
LYS 2090.0076
GLY 2100.0106
PRO 2110.0079
GLY 2120.0061
PRO 2130.0109
GLY 2140.0080
GLY 2150.0097
SER 2160.0113
ILE 2170.0145
GLN 2180.0113
VAL 2190.0100
ILE 2200.0115
ASN 2210.0101
GLY 2220.0076
SER 2230.0069
THR 2240.0089
ILE 2250.0074
GLY 2260.0068
THR 2270.0057
GLY 2280.0074
SER 2290.0102
LYS 2300.0069
LYS 2310.0049
THR 2320.0019
ILE 2330.0026
LEU 2340.0062
ILE 2350.0086
TYR 2360.0137
SER 2370.0131
ILE 2380.0122
ILE 2390.0086
GLY 2400.0087
VAL 2410.0065
LYS 2420.0030
LYS 2430.0033
GLY 2440.0066
THR 2450.0068
LEU 2460.0103
ALA 2470.0065
TRP 2480.0066
ALA 2490.0035
ARG 2500.0047
THR 2510.0086
GLY 2520.0059
PHE 2530.0040
SER 2540.0045
PRO 2550.0070
ALA 2560.0117
LYS 2570.0115
LYS 2580.0071
LEU 2590.0046
ASN 2600.0029
ALA 2610.0032
GLY 2620.0026
VAL 2630.0044
VAL 2640.0041
ARG 2650.0045
VAL 2660.0087
PHE 2670.0090
PHE 2680.0089
LEU 2690.0092
ASN 2700.0093
GLN 2710.0076
LYS 2720.0072
LYS 2730.0091
ALA 2740.0093
LYS 2750.0083
ASP 2760.0087
VAL 2770.0063
LEU 2780.0058
ARG 2790.0058
LYS 2800.0063
THR 2810.0073
SER 2820.0075
ARG 2830.0066
PRO 2840.0071
MET 2850.0060
VAL 2860.0095
ASP 2870.0082
LEU 2880.0101
THR 2890.0116
PHE 2900.0105
GLY 2910.0146
GLY 2920.0135

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.