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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 62  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1022
GLU 270.0060
PRO 280.0059
CYS 290.0046
VAL 300.0053
GLU 310.0049
VAL 320.0050
VAL 330.0039
PRO 340.0040
ASN 350.0029
ILE 360.0014
THR 370.0022
TYR 380.0023
GLN 390.0030
CYS 400.0024
MET 410.0031
GLU 420.0035
LEU 430.0034
ASN 440.0026
PHE 450.0019
TYR 460.0015
LYS 470.0020
ILE 480.0019
PRO 490.0028
ASP 500.0045
ASN 510.0052
LEU 520.0037
PRO 530.0036
PHE 540.0037
SER 550.0026
THR 560.0013
LYS 570.0016
ASN 580.0017
LEU 590.0012
ASP 600.0018
LEU 610.0013
SER 620.0021
PHE 630.0024
ASN 640.0015
PRO 650.0013
LEU 660.0011
ARG 670.0018
HIS 680.0020
LEU 690.0023
GLY 700.0026
SER 710.0032
TYR 720.0036
SER 730.0025
PHE 740.0027
PHE 750.0036
SER 760.0034
PHE 770.0028
PRO 780.0039
GLU 790.0032
LEU 800.0026
GLN 810.0032
VAL 820.0031
LEU 830.0027
ASP 840.0027
LEU 850.0025
SER 860.0028
ARG 870.0024
CYS 880.0020
GLU 890.0022
ILE 900.0023
GLN 910.0026
THR 920.0027
ILE 930.0029
GLU 940.0031
ASP 950.0036
GLY 960.0037
ALA 970.0031
TYR 980.0033
GLN 990.0040
SER 1000.0038
LEU 1010.0035
SER 1020.0042
HIS 1030.0040
LEU 1040.0036
SER 1050.0041
THR 1060.0038
LEU 1070.0035
ILE 1080.0033
LEU 1090.0031
THR 1100.0031
GLY 1110.0029
ASN 1120.0028
PRO 1130.0029
ILE 1140.0030
GLN 1150.0030
SER 1160.0030
LEU 1170.0032
ALA 1180.0033
LEU 1190.0035
GLY 1200.0035
ALA 1210.0034
PHE 1220.0036
SER 1230.0039
GLY 1240.0038
LEU 1250.0038
SER 1260.0042
SER 1270.0041
LEU 1280.0039
GLN 1290.0041
LYS 1300.0039
LEU 1310.0036
VAL 1320.0034
ALA 1330.0031
VAL 1340.0031
GLU 1350.0028
THR 1360.0026
ASN 1370.0018
LEU 1380.0016
ALA 1390.0012
SER 1400.0011
LEU 1410.0014
GLU 1420.0016
ASN 1430.0017
PHE 1440.0022
PRO 1450.0025
ILE 1460.0029
GLY 1470.0023
HIS 1480.0029
LEU 1490.0033
LYS 1500.0032
THR 1510.0037
LEU 1520.0033
LYS 1530.0035
GLU 1540.0034
LEU 1550.0031
ASN 1560.0031
VAL 1570.0023
ALA 1580.0025
HIS 1590.0026
ASN 1600.0020
LEU 1610.0017
ILE 1620.0019
GLN 1630.0023
SER 1640.0019
PHE 1650.0015
LYS 1660.0013
LEU 1670.0012
PRO 1680.0011
GLU 1690.0014
TYR 1700.0016
PHE 1710.0015
SER 1720.0018
ASN 1730.0023
LEU 1740.0023
THR 1750.0025
ASN 1760.0029
LEU 1770.0023
GLU 1780.0025
HIS 1790.0024
LEU 1800.0020
ASP 1810.0021
LEU 1820.0015
SER 1830.0023
SER 1840.0029
ASN 1850.0025
LYS 1860.0028
ILE 1870.0030
GLN 1880.0036
SER 1890.0032
ILE 1900.0025
TYR 1910.0028
CYS 1920.0026
THR 1930.0027
ASP 1940.0021
LEU 1950.0016
ARG 1960.0021
VAL 1970.0016
LEU 1980.0014
HIS 1990.0020
GLN 2000.0022
MET 2010.0020
PRO 2020.0020
LEU 2030.0022
LEU 2040.0015
ASN 2050.0015
LEU 2060.0010
SER 2070.0011
LEU 2080.0010
ASP 2090.0017
LEU 2100.0020
SER 2110.0027
LEU 2120.0034
ASN 2130.0032
PRO 2140.0037
MET 2150.0031
ASN 2160.0036
PHE 2170.0034
ILE 2180.0027
GLN 2190.0030
PRO 2200.0027
GLY 2210.0026
ALA 2220.0024
PHE 2230.0017
LYS 2240.0020
GLU 2250.0020
ILE 2260.0014
ARG 2270.0009
LEU 2280.0004
HIS 2290.0004
LYS 2300.0005
LEU 2310.0008
THR 2320.0018
LEU 2330.0019
ARG 2340.0023
ASN 2350.0026
ASN 2360.0025
PHE 2370.0028
ASP 2380.0032
SER 2390.0026
LEU 2400.0020
ASN 2410.0018
VAL 2420.0026
MET 2430.0021
LYS 2440.0015
THR 2450.0020
CYS 2460.0021
ILE 2470.0015
GLN 2480.0016
GLY 2490.0020
LEU 2500.0015
ALA 2510.0013
GLY 2520.0015
LEU 2530.0011
GLU 2540.0008
VAL 2550.0004
HIS 2560.0004
ARG 2570.0006
LEU 2580.0007
VAL 2590.0013
LEU 2600.0016
GLY 2610.0022
GLU 2620.0031
PHE 2630.0037
ARG 2640.0039
ASN 2650.0041
GLU 2660.0035
GLY 2670.0038
ASN 2680.0034
LEU 2690.0028
GLU 2700.0027
LYS 2710.0024
PHE 2720.0027
ASP 2730.0023
LYS 2740.0021
SER 2750.0015
ALA 2760.0017
LEU 2770.0015
GLU 2780.0010
GLY 2790.0008
LEU 2800.0008
CYS 2810.0006
ASN 2820.0008
LEU 2830.0007
THR 2840.0007
ILE 2850.0006
GLU 2860.0008
GLU 2870.0009
PHE 2880.0013
ARG 2890.0018
LEU 2900.0023
ALA 2910.0027
TYR 2920.0036
LEU 2930.0035
ASP 2940.0039
TYR 2950.0037
TYR 2960.0040
LEU 2970.0042
ASP 2980.0045
GLY 2990.0040
ILE 3000.0035
ILE 3010.0035
ASP 3020.0026
LEU 3030.0026
PHE 3040.0022
ASN 3050.0020
CYS 3060.0015
LEU 3070.0015
THR 3080.0015
ASN 3090.0011
VAL 3100.0011
SER 3110.0009
SER 3120.0013
PHE 3130.0017
SER 3140.0022
LEU 3150.0027
VAL 3160.0031
SER 3170.0040
VAL 3180.0040
THR 3190.0043
ILE 3200.0042
GLU 3210.0045
ARG 3220.0043
VAL 3230.0036
LYS 3240.0037
ASP 3250.0035
PHE 3260.0028
SER 3270.0028
TYR 3280.0027
ASN 3290.0022
PHE 3300.0018
GLY 3310.0012
TRP 3320.0012
GLN 3330.0008
HIS 3340.0012
LEU 3350.0016
GLU 3360.0020
LEU 3370.0026
VAL 3380.0031
ASN 3390.0038
CYS 3400.0038
LYS 3410.0043
PHE 3420.0040
GLY 3430.0046
GLN 3440.0038
PHE 3450.0029
PRO 3460.0028
THR 3470.0026
LEU 3480.0021
LYS 3490.0021
LEU 3500.0016
LYS 3510.0014
SER 3520.0007
LEU 3530.0007
LYS 3540.0005
ARG 3550.0011
LEU 3560.0012
THR 3570.0018
PHE 3580.0019
THR 3590.0026
SER 3600.0032
ASN 3610.0033
LYS 3620.0040
GLY 3630.0041
GLY 3640.0037
ASN 3650.0027
ALA 3660.0027
PHE 3670.0013
SER 3680.0021
GLU 3690.0022
VAL 3700.0015
ASP 3710.0015
LEU 3720.0009
PRO 3730.0012
SER 3740.0006
LEU 3750.0009
GLU 3760.0018
PHE 3770.0027
LEU 3780.0019
ASP 3790.0021
LEU 3800.0014
SER 3810.0020
ARG 3820.0032
ASN 3830.0024
GLY 3840.0024
LEU 3850.0018
SER 3860.0016
PHE 3870.0013
LYS 3880.0022
GLY 3890.0031
CYS 3900.0029
CYS 3910.0036
SER 3920.0037
GLN 3930.0034
SER 3940.0032
ASP 3950.0023
PHE 3960.0017
GLY 3970.0023
THR 3980.0023
ILE 3990.0033
SER 4000.0032
LEU 4010.0033
LYS 4020.0050
TYR 4030.0045
LEU 4040.0035
ASP 4050.0031
LEU 4060.0022
SER 4070.0032
PHE 4080.0030
ASN 4090.0024
GLY 4100.0021
VAL 4110.0020
ILE 4120.0017
THR 4130.0023
MET 4140.0032
SER 4150.0038
SER 4160.0044
ASN 4170.0050
PHE 4180.0049
LEU 4190.0056
GLY 4200.0057
LEU 4210.0053
GLU 4220.0069
GLN 4230.0070
LEU 4240.0061
GLU 4250.0066
HIS 4260.0057
LEU 4270.0054
ASP 4280.0046
PHE 4290.0033
GLN 4300.0033
HIS 4310.0024
SER 4320.0022
ASN 4330.0017
LEU 4340.0019
LYS 4350.0023
GLN 4360.0032
MET 4370.0030
SER 4380.0033
GLU 4390.0041
PHE 4400.0046
SER 4410.0048
VAL 4420.0047
PHE 4430.0052
LEU 4440.0061
SER 4450.0067
LEU 4460.0064
ARG 4470.0076
ASN 4480.0077
LEU 4490.0067
ILE 4500.0067
TYR 4510.0058
LEU 4520.0052
ASP 4530.0043
ILE 4540.0033
SER 4550.0028
HIS 4560.0019
THR 4570.0024
HIS 4580.0018
THR 4590.0017
ARG 4600.0015
VAL 4610.0020
ALA 4620.0026
PHE 4630.0033
ASN 4640.0032
GLY 4650.0040
ILE 4660.0037
PHE 4670.0045
ASN 4680.0053
GLY 4690.0061
LEU 4700.0057
SER 4710.0061
SER 4720.0064
LEU 4730.0055
GLU 4740.0052
VAL 4750.0048
LEU 4760.0040
LYS 4770.0036
MET 4780.0028
ALA 4790.0023
GLY 4800.0017
ASN 4810.0016
SER 4820.0018
PHE 4830.0018
GLN 4840.0023
GLU 4850.0022
ASN 4860.0016
PHE 4870.0021
LEU 4880.0017
PRO 4890.0026
ASP 4900.0026
ILE 4910.0030
PHE 4920.0028
THR 4930.0033
GLU 4940.0040
LEU 4950.0034
ARG 4960.0027
ASN 4970.0034
LEU 4980.0028
THR 4990.0028
PHE 5000.0029
LEU 5010.0020
ASP 5020.0021
LEU 5030.0015
SER 5040.0015
GLN 5050.0013
CYS 5060.0010
GLN 5070.0015
LEU 5080.0013
GLU 5090.0014
GLN 5100.0019
LEU 5110.0020
SER 5120.0040
PRO 5130.0043
THR 5140.0039
ALA 5150.0028
PHE 5160.0019
ASN 5170.0031
SER 5180.0024
LEU 5190.0009
SER 5200.0016
SER 5210.0014
LEU 5220.0014
GLN 5230.0026
VAL 5240.0023
LEU 5250.0012
ASN 5260.0013
MET 5270.0004
SER 5280.0011
HIS 5290.0015
ASN 5300.0011
ASN 5310.0012
PHE 5320.0019
PHE 5330.0019
SER 5340.0020
LEU 5350.0025
ASP 5360.0039
THR 5370.0051
PHE 5380.0061
PRO 5390.0048
TYR 5400.0045
LYS 5410.0064
CYS 5420.0051
LEU 5430.0041
ASN 5440.0051
SER 5450.0045
LEU 5460.0041
GLN 5470.0049
VAL 5480.0039
LEU 5490.0027
ASP 5500.0021
TYR 5510.0011
SER 5520.0020
LEU 5530.0028
ASN 5540.0020
HIS 5550.0021
ILE 5560.0007
MET 5570.0013
THR 5580.0017
SER 5590.0036
LYS 5600.0052
LYS 5610.0068
GLN 5620.0077
GLU 5630.0082
LEU 5640.0071
GLN 5650.0090
HIS 5660.0085
PHE 5670.0065
PRO 5680.0069
SER 5690.0082
SER 5700.0074
LEU 5710.0064
ALA 5720.0061
PHE 5730.0049
LEU 5740.0034
ASN 5750.0031
LEU 5760.0023
THR 5770.0038
GLN 5780.0044
ASN 5790.0033
ASP 5800.0037
PHE 5810.0030
ALA 5820.0025
CYS 5830.0038
THR 5840.0029
CYS 5850.0029
GLU 5860.0016
HIS 5870.0023
GLN 5880.0043
SER 5890.0055
PHE 5900.0046
LEU 5910.0050
GLN 5920.0067
TRP 5930.0069
ILE 5940.0063
LYS 5950.0081
ASP 5960.0091
GLN 5970.0072
ARG 5980.0075
GLN 5990.0083
LEU 6000.0062
LEU 6010.0052
VAL 6020.0046
GLU 6030.0055
VAL 6040.0055
GLU 6050.0068
ARG 6060.0065
MET 6070.0047
GLU 6080.0055
CYS 6090.0051
ALA 6100.0052
THR 6110.0048
PRO 6120.0048
SER 6130.0064
ASP 6140.0074
LYS 6150.0058
GLN 6160.0046
GLY 6170.0077
MET 6180.0078
PRO 6190.0072
VAL 6200.0059
LEU 6210.0075
SER 6220.0092
LEU 6230.0083
ASN 6240.0095
ILE 6250.0087
THR 6260.0100
CYS 6270.0159
GLU 10.0112
ALA 20.0135
ALA 30.0121
ALA 40.0070
LYS 50.0089
MET 60.0112
GLN 70.0094
ARG 80.0079
LEU 90.0115
VAL 100.0133
LEU 110.0104
LEU 120.0114
LEU 130.0111
ALA 140.0100
ILE 150.0104
SER 160.0074
LEU 170.0057
LEU 180.0057
LEU 190.0065
TYR 200.0051
GLN 210.0029
ASP 220.0032
LEU 230.0027
PRO 240.0030
VAL 250.0036
ARG 260.0015
SER 270.0012
GLU 280.0016
PHE 290.0012
GLU 300.0009
LEU 310.0013
ASP 320.0015
ARG 330.0008
ILE 340.0014
CYS 350.0020
GLY 360.0031
TYR 370.0040
GLY 380.0027
THR 390.0032
ALA 400.0018
ARG 410.0002
CYS 420.0018
ARG 430.0029
LYS 440.0045
LYS 450.0041
CYS 460.0026
ARG 470.0034
SER 480.0043
GLN 490.0041
GLU 500.0030
TYR 510.0025
ARG 520.0011
ILE 530.0017
GLY 540.0035
ARG 550.0049
CYS 560.0045
PRO 570.0063
ASN 580.0064
THR 590.0068
TYR 600.0051
ALA 610.0025
CYS 620.0013
CYS 630.0008
LEU 640.0012
ARG 650.0026
LYS 660.0046
TRP 670.0045
ASP 680.0041
GLU 690.0042
SER 700.0037
LEU 710.0039
LEU 720.0040
ASN 730.0033
ARG 740.0032
THR 750.0036
LYS 760.0028
PRO 770.0034
GLU 780.0034
ALA 790.0038
ALA 800.0045
ALA 810.0073
LYS 820.0074
LYS 830.0076
GLU 840.0076
MET 850.0082
ASN 860.0074
LEU 870.0049
SER 880.0042
VAL 890.0025
GLY 900.0039
LEU 910.0048
GLY 920.0091
GLY 930.0096
GLY 940.0096
SER 950.0054
ASN 960.0046
LEU 970.0038
SER 980.0060
VAL 990.0065
GLY 1000.0089
LEU 1010.0084
GLY 1020.0097
GLU 1030.0074
ILE 1040.0069
GLY 1050.0047
GLY 1060.0130
GLY 1070.0119
SER 1080.0111
LYS 1090.0047
LEU 1100.0053
LEU 1110.0066
ASP 1120.0080
ILE 1130.0062
ASN 1140.0095
LEU 1150.0086
GLY 1160.0206
ARG 1170.0270
GLY 1180.0190
GLY 1190.0201
GLY 1200.0202
SER 1210.0107
MET 1220.0085
VAL 1230.0054
ASP 1240.0039
LEU 1250.0028
THR 1260.0045
PHE 1270.0045
GLY 1280.0065
GLY 1290.0068
VAL 1300.0084
GLY 1310.0101
GLY 1320.0120
GLY 1330.0112
SER 1340.0103
THR 1350.0089
PHE 1360.0043
THR 1370.0054
PHE 1380.0048
PHE 1390.0082
PRO 1400.0097
LEU 1410.0090
VAL 1420.0157
ILE 1430.0219
GLY 1440.0294
GLY 1450.0392
GLY 1460.0282
SER 1470.0172
ASP 1480.0052
ALA 1490.0062
MET 1500.0016
TYR 1510.0025
LEU 1520.0021
GLY 1530.0012
PHE 1540.0010
ALA 1550.0006
ALA 1560.0077
GLY 1570.0112
GLY 1580.0161
GLY 1590.0164
SER 1600.0163
ALA 1610.0095
GLY 1620.0068
GLY 1630.0036
GLU 1640.0045
ASN 1650.0034
HIS 1660.0033
VAL 1670.0027
ALA 1680.0025
PHE 1690.0044
GLY 1700.0056
PRO 1710.0150
GLY 1720.0112
PRO 1730.0088
GLY 1740.0030
VAL 1750.0035
ASP 1760.0031
LEU 1770.0038
THR 1780.0033
PHE 1790.0046
GLY 1800.0053
GLY 1810.0059
VAL 1820.0065
GLN 1830.0050
PHE 1840.0059
ALA 1850.0055
MET 1860.0074
VAL 1870.0030
ASN 1880.0025
ASN 1890.0023
GLY 1900.0069
PRO 1910.0261
GLY 1920.0141
PRO 1930.0049
GLY 1940.0114
GLU 1950.0076
SER 1960.0042
PHE 1970.0038
THR 1980.0019
ALA 1990.0060
GLN 2000.0056
PRO 2010.0031
ALA 2020.0036
ASP 2030.0040
MET 2040.0082
GLN 2050.0094
ALA 2060.0104
GLY 2070.0092
ILE 2080.0052
LYS 2090.0066
GLY 2100.0181
PRO 2110.0145
GLY 2120.0170
PRO 2130.0098
GLY 2140.0175
GLY 2150.0187
SER 2160.0122
ILE 2170.0195
GLN 2180.0268
VAL 2190.0207
ILE 2200.0430
ASN 2210.0141
GLY 2220.0075
SER 2230.0416
THR 2240.0670
ILE 2250.0663
GLY 2260.0676
THR 2270.0529
GLY 2280.0280
SER 2290.0657
LYS 2300.0533
LYS 2310.0422
THR 2320.0290
ILE 2330.0258
LEU 2340.0086
ILE 2350.0125
TYR 2360.0117
SER 2370.0115
ILE 2380.0123
ILE 2390.0108
GLY 2400.0117
VAL 2410.0090
LYS 2420.0072
LYS 2430.0072
GLY 2440.0072
THR 2450.0070
LEU 2460.0148
ALA 2470.0138
TRP 2480.0143
ALA 2490.0143
ARG 2500.0151
THR 2510.0191
GLY 2520.0188
PHE 2530.0199
SER 2540.0234
PRO 2550.0236
ALA 2560.0147
LYS 2570.0150
LYS 2580.0297
LEU 2590.0503
ASN 2600.0715
ALA 2610.1016
GLY 2620.0726
VAL 2630.0534
VAL 2640.0480
ARG 2650.0254
VAL 2660.0262
PHE 2670.0246
PHE 2680.0237
LEU 2690.0238
ASN 2700.0260
GLN 2710.0157
LYS 2720.0161
LYS 2730.0175
ALA 2740.0135
LYS 2750.0080
ASP 2760.0090
VAL 2770.0049
LEU 2780.0016
ARG 2790.0045
LYS 2800.0093
THR 2810.0177
SER 2820.0263
ARG 2830.0367
PRO 2840.0491
MET 2850.0585
VAL 2860.0649
ASP 2870.0328
LEU 2880.0091
THR 2890.0346
PHE 2900.0687
GLY 2910.0423
GLY 2920.1022

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.