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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 63  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0654
GLU 270.0022
PRO 280.0019
CYS 290.0015
VAL 300.0014
GLU 310.0016
VAL 320.0011
VAL 330.0015
PRO 340.0021
ASN 350.0023
ILE 360.0019
THR 370.0012
TYR 380.0011
GLN 390.0006
CYS 400.0007
MET 410.0004
GLU 420.0007
LEU 430.0009
ASN 440.0007
PHE 450.0007
TYR 460.0007
LYS 470.0010
ILE 480.0012
PRO 490.0014
ASP 500.0021
ASN 510.0022
LEU 520.0019
PRO 530.0022
PHE 540.0024
SER 550.0023
THR 560.0018
LYS 570.0017
ASN 580.0012
LEU 590.0010
ASP 600.0006
LEU 610.0005
SER 620.0005
PHE 630.0005
ASN 640.0002
PRO 650.0002
LEU 660.0006
ARG 670.0008
HIS 680.0011
LEU 690.0013
GLY 700.0016
SER 710.0019
TYR 720.0020
SER 730.0015
PHE 740.0016
PHE 750.0021
SER 760.0020
PHE 770.0019
PRO 780.0023
GLU 790.0021
LEU 800.0017
GLN 810.0016
VAL 820.0014
LEU 830.0012
ASP 840.0011
LEU 850.0010
SER 860.0011
ARG 870.0011
CYS 880.0008
GLU 890.0009
ILE 900.0011
GLN 910.0012
THR 920.0015
ILE 930.0016
GLU 940.0018
ASP 950.0020
GLY 960.0020
ALA 970.0017
TYR 980.0017
GLN 990.0021
SER 1000.0020
LEU 1010.0018
SER 1020.0020
HIS 1030.0018
LEU 1040.0015
SER 1050.0016
THR 1060.0014
LEU 1070.0015
ILE 1080.0014
LEU 1090.0014
THR 1100.0014
GLY 1110.0013
ASN 1120.0012
PRO 1130.0013
ILE 1140.0014
GLN 1150.0015
SER 1160.0016
LEU 1170.0017
ALA 1180.0018
LEU 1190.0019
GLY 1200.0018
ALA 1210.0017
PHE 1220.0017
SER 1230.0018
GLY 1240.0017
LEU 1250.0015
SER 1260.0017
SER 1270.0015
LEU 1280.0015
GLN 1290.0015
LYS 1300.0015
LEU 1310.0014
VAL 1320.0015
ALA 1330.0014
VAL 1340.0014
GLU 1350.0012
THR 1360.0011
ASN 1370.0009
LEU 1380.0008
ALA 1390.0007
SER 1400.0007
LEU 1410.0006
GLU 1420.0010
ASN 1430.0010
PHE 1440.0010
PRO 1450.0010
ILE 1460.0011
GLY 1470.0008
HIS 1480.0010
LEU 1490.0011
LYS 1500.0010
THR 1510.0012
LEU 1520.0012
LYS 1530.0012
GLU 1540.0012
LEU 1550.0011
ASN 1560.0011
VAL 1570.0008
ALA 1580.0007
HIS 1590.0006
ASN 1600.0005
LEU 1610.0006
ILE 1620.0007
GLN 1630.0009
SER 1640.0009
PHE 1650.0009
LYS 1660.0010
LEU 1670.0009
PRO 1680.0008
GLU 1690.0009
TYR 1700.0007
PHE 1710.0008
SER 1720.0010
ASN 1730.0009
LEU 1740.0008
THR 1750.0009
ASN 1760.0009
LEU 1770.0008
GLU 1780.0008
HIS 1790.0007
LEU 1800.0006
ASP 1810.0006
LEU 1820.0006
SER 1830.0005
SER 1840.0005
ASN 1850.0006
LYS 1860.0008
ILE 1870.0010
GLN 1880.0011
SER 1890.0011
ILE 1900.0011
TYR 1910.0012
CYS 1920.0013
THR 1930.0013
ASP 1940.0012
LEU 1950.0012
ARG 1960.0012
VAL 1970.0012
LEU 1980.0012
HIS 1990.0013
GLN 2000.0013
MET 2010.0012
PRO 2020.0014
LEU 2030.0013
LEU 2040.0011
ASN 2050.0011
LEU 2060.0010
SER 2070.0011
LEU 2080.0011
ASP 2090.0011
LEU 2100.0011
SER 2110.0011
LEU 2120.0013
ASN 2130.0012
PRO 2140.0012
MET 2150.0011
ASN 2160.0011
PHE 2170.0012
ILE 2180.0012
GLN 2190.0011
PRO 2200.0010
GLY 2210.0010
ALA 2220.0012
PHE 2230.0012
LYS 2240.0012
GLU 2250.0012
ILE 2260.0013
ARG 2270.0014
LEU 2280.0014
HIS 2290.0015
LYS 2300.0015
LEU 2310.0015
THR 2320.0018
LEU 2330.0016
ARG 2340.0021
ASN 2350.0022
ASN 2360.0018
PHE 2370.0022
ASP 2380.0026
SER 2390.0024
LEU 2400.0020
ASN 2410.0020
VAL 2420.0018
MET 2430.0016
LYS 2440.0013
THR 2450.0012
CYS 2460.0012
ILE 2470.0012
GLN 2480.0010
GLY 2490.0011
LEU 2500.0011
ALA 2510.0007
GLY 2520.0011
LEU 2530.0012
GLU 2540.0013
VAL 2550.0015
HIS 2560.0016
ARG 2570.0017
LEU 2580.0016
VAL 2590.0018
LEU 2600.0018
GLY 2610.0020
GLU 2620.0028
PHE 2630.0036
ARG 2640.0043
ASN 2650.0047
GLU 2660.0041
GLY 2670.0040
ASN 2680.0035
LEU 2690.0031
GLU 2700.0033
LYS 2710.0028
PHE 2720.0023
ASP 2730.0021
LYS 2740.0016
SER 2750.0017
ALA 2760.0018
LEU 2770.0014
GLU 2780.0013
GLY 2790.0012
LEU 2800.0011
CYS 2810.0009
ASN 2820.0009
LEU 2830.0010
THR 2840.0012
ILE 2850.0014
GLU 2860.0016
GLU 2870.0017
PHE 2880.0016
ARG 2890.0019
LEU 2900.0019
ALA 2910.0023
TYR 2920.0029
LEU 2930.0027
ASP 2940.0032
TYR 2950.0029
TYR 2960.0025
LEU 2970.0021
ASP 2980.0019
GLY 2990.0015
ILE 3000.0014
ILE 3010.0016
ASP 3020.0014
LEU 3030.0014
PHE 3040.0012
ASN 3050.0012
CYS 3060.0012
LEU 3070.0013
THR 3080.0014
ASN 3090.0016
VAL 3100.0015
SER 3110.0018
SER 3120.0018
PHE 3130.0016
SER 3140.0019
LEU 3150.0019
VAL 3160.0024
SER 3170.0028
VAL 3180.0023
THR 3190.0021
ILE 3200.0015
GLU 3210.0014
ARG 3220.0012
VAL 3230.0011
LYS 3240.0014
ASP 3250.0015
PHE 3260.0013
SER 3270.0018
TYR 3280.0019
ASN 3290.0019
PHE 3300.0017
GLY 3310.0017
TRP 3320.0018
GLN 3330.0020
HIS 3340.0019
LEU 3350.0018
GLU 3360.0019
LEU 3370.0019
VAL 3380.0025
ASN 3390.0026
CYS 3400.0020
LYS 3410.0018
PHE 3420.0011
GLY 3430.0009
GLN 3440.0008
PHE 3450.0011
PRO 3460.0010
THR 3470.0017
LEU 3480.0017
LYS 3490.0021
LEU 3500.0019
LYS 3510.0023
SER 3520.0024
LEU 3530.0021
LYS 3540.0023
ARG 3550.0020
LEU 3560.0021
THR 3570.0025
PHE 3580.0023
THR 3590.0026
SER 3600.0026
ASN 3610.0021
LYS 3620.0018
GLY 3630.0012
GLY 3640.0006
ASN 3650.0011
ALA 3660.0014
PHE 3670.0021
SER 3680.0021
GLU 3690.0025
VAL 3700.0019
ASP 3710.0022
LEU 3720.0022
PRO 3730.0028
SER 3740.0021
LEU 3750.0018
GLU 3760.0020
PHE 3770.0030
LEU 3780.0030
ASP 3790.0030
LEU 3800.0030
SER 3810.0032
ARG 3820.0034
ASN 3830.0023
GLY 3840.0017
LEU 3850.0017
SER 3860.0016
PHE 3870.0027
LYS 3880.0030
GLY 3890.0037
CYS 3900.0039
CYS 3910.0043
SER 3920.0042
GLN 3930.0039
SER 3940.0038
ASP 3950.0033
PHE 3960.0028
GLY 3970.0028
THR 3980.0026
ILE 3990.0033
SER 4000.0027
LEU 4010.0026
LYS 4020.0042
TYR 4030.0041
LEU 4040.0040
ASP 4050.0040
LEU 4060.0039
SER 4070.0042
PHE 4080.0035
ASN 4090.0027
GLY 4100.0022
VAL 4110.0022
ILE 4120.0037
THR 4130.0039
MET 4140.0044
SER 4150.0045
SER 4160.0048
ASN 4170.0049
PHE 4180.0046
LEU 4190.0047
GLY 4200.0045
LEU 4210.0044
GLU 4220.0049
GLN 4230.0050
LEU 4240.0048
GLU 4250.0050
HIS 4260.0048
LEU 4270.0056
ASP 4280.0052
PHE 4290.0043
GLN 4300.0045
HIS 4310.0039
SER 4320.0044
ASN 4330.0044
LEU 4340.0048
LYS 4350.0046
GLN 4360.0051
MET 4370.0047
SER 4380.0047
GLU 4390.0047
PHE 4400.0047
SER 4410.0047
VAL 4420.0047
PHE 4430.0047
LEU 4440.0047
SER 4450.0047
LEU 4460.0047
ARG 4470.0046
ASN 4480.0048
LEU 4490.0047
ILE 4500.0047
TYR 4510.0047
LEU 4520.0050
ASP 4530.0048
ILE 4540.0036
SER 4550.0040
HIS 4560.0037
THR 4570.0054
HIS 4580.0047
THR 4590.0044
ARG 4600.0038
VAL 4610.0041
ALA 4620.0038
PHE 4630.0035
ASN 4640.0030
GLY 4650.0034
ILE 4660.0041
PHE 4670.0037
ASN 4680.0034
GLY 4690.0035
LEU 4700.0035
SER 4710.0032
SER 4720.0036
LEU 4730.0034
GLU 4740.0033
VAL 4750.0036
LEU 4760.0035
LYS 4770.0033
MET 4780.0029
ALA 4790.0036
GLY 4800.0039
ASN 4810.0032
SER 4820.0046
PHE 4830.0038
GLN 4840.0041
GLU 4850.0057
ASN 4860.0057
PHE 4870.0055
LEU 4880.0049
PRO 4890.0045
ASP 4900.0043
ILE 4910.0038
PHE 4920.0038
THR 4930.0037
GLU 4940.0032
LEU 4950.0031
ARG 4960.0033
ASN 4970.0033
LEU 4980.0033
THR 4990.0036
PHE 5000.0041
LEU 5010.0042
ASP 5020.0032
LEU 5030.0042
SER 5040.0047
GLN 5050.0055
CYS 5060.0055
GLN 5070.0063
LEU 5080.0058
GLU 5090.0070
GLN 5100.0066
LEU 5110.0058
SER 5120.0068
PRO 5130.0072
THR 5140.0065
ALA 5150.0061
PHE 5160.0062
ASN 5170.0063
SER 5180.0052
LEU 5190.0052
SER 5200.0057
SER 5210.0051
LEU 5220.0060
GLN 5230.0061
VAL 5240.0062
LEU 5250.0063
ASN 5260.0064
MET 5270.0068
SER 5280.0068
HIS 5290.0072
ASN 5300.0076
ASN 5310.0082
PHE 5320.0085
PHE 5330.0086
SER 5340.0086
LEU 5350.0083
ASP 5360.0085
THR 5370.0085
PHE 5380.0086
PRO 5390.0085
TYR 5400.0084
LYS 5410.0084
CYS 5420.0078
LEU 5430.0076
ASN 5440.0077
SER 5450.0074
LEU 5460.0078
GLN 5470.0084
VAL 5480.0083
LEU 5490.0082
ASP 5500.0082
TYR 5510.0080
SER 5520.0078
LEU 5530.0079
ASN 5540.0078
HIS 5550.0077
ILE 5560.0076
MET 5570.0071
THR 5580.0070
SER 5590.0075
LYS 5600.0081
LYS 5610.0088
GLN 5620.0081
GLU 5630.0083
LEU 5640.0079
GLN 5650.0079
HIS 5660.0084
PHE 5670.0088
PRO 5680.0088
SER 5690.0091
SER 5700.0090
LEU 5710.0091
ALA 5720.0097
PHE 5730.0095
LEU 5740.0088
ASN 5750.0089
LEU 5760.0080
THR 5770.0081
GLN 5780.0086
ASN 5790.0080
ASP 5800.0076
PHE 5810.0060
ALA 5820.0056
CYS 5830.0049
THR 5840.0053
CYS 5850.0057
GLU 5860.0035
HIS 5870.0005
GLN 5880.0022
SER 5890.0044
PHE 5900.0042
LEU 5910.0015
GLN 5920.0023
TRP 5930.0047
ILE 5940.0042
LYS 5950.0024
ASP 5960.0050
GLN 5970.0060
ARG 5980.0055
GLN 5990.0074
LEU 6000.0088
LEU 6010.0081
VAL 6020.0092
GLU 6030.0089
VAL 6040.0077
GLU 6050.0083
ARG 6060.0092
MET 6070.0084
GLU 6080.0089
CYS 6090.0082
ALA 6100.0107
THR 6110.0101
PRO 6120.0127
SER 6130.0174
ASP 6140.0183
LYS 6150.0142
GLN 6160.0153
GLY 6170.0136
MET 6180.0108
PRO 6190.0081
VAL 6200.0051
LEU 6210.0029
SER 6220.0063
LEU 6230.0074
ASN 6240.0100
ILE 6250.0095
THR 6260.0146
CYS 6270.0354
GLU 10.0178
ALA 20.0207
ALA 30.0185
ALA 40.0090
LYS 50.0115
MET 60.0161
GLN 70.0127
ARG 80.0113
LEU 90.0180
VAL 100.0208
LEU 110.0163
LEU 120.0184
LEU 130.0175
ALA 140.0149
ILE 150.0160
SER 160.0106
LEU 170.0070
LEU 180.0073
LEU 190.0090
TYR 200.0055
GLN 210.0033
ASP 220.0049
LEU 230.0038
PRO 240.0042
VAL 250.0032
ARG 260.0035
SER 270.0029
GLU 280.0030
PHE 290.0024
GLU 300.0020
LEU 310.0022
ASP 320.0020
ARG 330.0015
ILE 340.0017
CYS 350.0019
GLY 360.0028
TYR 370.0034
GLY 380.0025
THR 390.0024
ALA 400.0016
ARG 410.0011
CYS 420.0011
ARG 430.0010
LYS 440.0017
LYS 450.0017
CYS 460.0014
ARG 470.0015
SER 480.0020
GLN 490.0019
GLU 500.0015
TYR 510.0018
ARG 520.0009
ILE 530.0014
GLY 540.0012
ARG 550.0015
CYS 560.0021
PRO 570.0031
ASN 580.0030
THR 590.0025
TYR 600.0017
ALA 610.0004
CYS 620.0005
CYS 630.0005
LEU 640.0012
ARG 650.0015
LYS 660.0024
TRP 670.0023
ASP 680.0020
GLU 690.0018
SER 700.0017
LEU 710.0022
LEU 720.0024
ASN 730.0019
ARG 740.0017
THR 750.0022
LYS 760.0034
PRO 770.0037
GLU 780.0025
ALA 790.0034
ALA 800.0049
ALA 810.0162
LYS 820.0185
LYS 830.0138
GLU 840.0176
MET 850.0140
ASN 860.0157
LEU 870.0127
SER 880.0144
VAL 890.0130
GLY 900.0150
LEU 910.0180
GLY 920.0267
GLY 930.0424
GLY 940.0421
SER 950.0355
ASN 960.0219
LEU 970.0208
SER 980.0193
VAL 990.0182
GLY 1000.0182
LEU 1010.0169
GLY 1020.0187
GLU 1030.0206
ILE 1040.0191
GLY 1050.0217
GLY 1060.0256
GLY 1070.0206
SER 1080.0214
LYS 1090.0158
LEU 1100.0191
LEU 1110.0176
ASP 1120.0170
ILE 1130.0118
ASN 1140.0134
LEU 1150.0094
GLY 1160.0121
ARG 1170.0137
GLY 1180.0114
GLY 1190.0075
GLY 1200.0130
SER 1210.0042
MET 1220.0020
VAL 1230.0015
ASP 1240.0030
LEU 1250.0024
THR 1260.0065
PHE 1270.0066
GLY 1280.0073
GLY 1290.0113
VAL 1300.0129
GLY 1310.0230
GLY 1320.0234
GLY 1330.0224
SER 1340.0185
THR 1350.0163
PHE 1360.0064
THR 1370.0059
PHE 1380.0072
PHE 1390.0102
PRO 1400.0128
LEU 1410.0175
VAL 1420.0303
ILE 1430.0371
GLY 1440.0548
GLY 1450.0654
GLY 1460.0612
SER 1470.0460
ASP 1480.0268
ALA 1490.0261
MET 1500.0160
TYR 1510.0176
LEU 1520.0147
GLY 1530.0147
PHE 1540.0126
ALA 1550.0119
ALA 1560.0160
GLY 1570.0189
GLY 1580.0236
GLY 1590.0247
SER 1600.0245
ALA 1610.0228
GLY 1620.0216
GLY 1630.0172
GLU 1640.0125
ASN 1650.0090
HIS 1660.0050
VAL 1670.0054
ALA 1680.0072
PHE 1690.0092
GLY 1700.0116
PRO 1710.0474
GLY 1720.0535
PRO 1730.0524
GLY 1740.0325
VAL 1750.0117
ASP 1760.0134
LEU 1770.0087
THR 1780.0113
PHE 1790.0118
GLY 1800.0139
GLY 1810.0313
VAL 1820.0376
GLN 1830.0358
PHE 1840.0357
ALA 1850.0395
MET 1860.0277
VAL 1870.0323
ASN 1880.0218
ASN 1890.0109
GLY 1900.0392
PRO 1910.0389
GLY 1920.0367
PRO 1930.0189
GLY 1940.0235
GLU 1950.0177
SER 1960.0251
PHE 1970.0165
THR 1980.0155
ALA 1990.0117
GLN 2000.0059
PRO 2010.0035
ALA 2020.0078
ASP 2030.0083
MET 2040.0098
GLN 2050.0140
ALA 2060.0039
GLY 2070.0101
ILE 2080.0148
LYS 2090.0192
GLY 2100.0284
PRO 2110.0158
GLY 2120.0024
PRO 2130.0136
GLY 2140.0212
GLY 2150.0163
SER 2160.0252
ILE 2170.0175
GLN 2180.0191
VAL 2190.0199
ILE 2200.0253
ASN 2210.0296
GLY 2220.0223
SER 2230.0145
THR 2240.0268
ILE 2250.0262
GLY 2260.0299
THR 2270.0255
GLY 2280.0116
SER 2290.0152
LYS 2300.0230
LYS 2310.0246
THR 2320.0342
ILE 2330.0391
LEU 2340.0482
ILE 2350.0586
TYR 2360.0553
SER 2370.0466
ILE 2380.0377
ILE 2390.0287
GLY 2400.0210
VAL 2410.0182
LYS 2420.0125
LYS 2430.0106
GLY 2440.0089
THR 2450.0114
LEU 2460.0302
ALA 2470.0294
TRP 2480.0357
ALA 2490.0340
ARG 2500.0403
THR 2510.0509
GLY 2520.0420
PHE 2530.0376
SER 2540.0338
PRO 2550.0220
ALA 2560.0236
LYS 2570.0149
LYS 2580.0111
LEU 2590.0128
ASN 2600.0176
ALA 2610.0246
GLY 2620.0247
VAL 2630.0265
VAL 2640.0269
ARG 2650.0280
VAL 2660.0196
PHE 2670.0194
PHE 2680.0172
LEU 2690.0199
ASN 2700.0245
GLN 2710.0177
LYS 2720.0177
LYS 2730.0201
ALA 2740.0176
LYS 2750.0131
ASP 2760.0127
VAL 2770.0121
LEU 2780.0082
ARG 2790.0050
LYS 2800.0087
THR 2810.0095
SER 2820.0135
ARG 2830.0145
PRO 2840.0191
MET 2850.0213
VAL 2860.0216
ASP 2870.0179
LEU 2880.0079
THR 2890.0055
PHE 2900.0142
GLY 2910.0115
GLY 2920.0238

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.