CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 64  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0821
GLU 270.0106
PRO 280.0119
CYS 290.0092
VAL 300.0117
GLU 310.0119
VAL 320.0138
VAL 330.0139
PRO 340.0120
ASN 350.0082
ILE 360.0097
THR 370.0087
TYR 380.0066
GLN 390.0068
CYS 400.0049
MET 410.0051
GLU 420.0061
LEU 430.0072
ASN 440.0073
PHE 450.0061
TYR 460.0076
LYS 470.0068
ILE 480.0042
PRO 490.0038
ASP 500.0052
ASN 510.0054
LEU 520.0023
PRO 530.0020
PHE 540.0036
SER 550.0061
THR 560.0053
LYS 570.0072
ASN 580.0065
LEU 590.0039
ASP 600.0033
LEU 610.0009
SER 620.0011
PHE 630.0011
ASN 640.0024
PRO 650.0043
LEU 660.0044
ARG 670.0049
HIS 680.0052
LEU 690.0050
GLY 700.0056
SER 710.0062
TYR 720.0067
SER 730.0056
PHE 740.0053
PHE 750.0061
SER 760.0053
PHE 770.0050
PRO 780.0070
GLU 790.0072
LEU 800.0059
GLN 810.0067
VAL 820.0052
LEU 830.0044
ASP 840.0038
LEU 850.0035
SER 860.0032
ARG 870.0030
CYS 880.0028
GLU 890.0037
ILE 900.0042
GLN 910.0052
THR 920.0048
ILE 930.0050
GLU 940.0055
ASP 950.0059
GLY 960.0059
ALA 970.0060
TYR 980.0060
GLN 990.0069
SER 1000.0068
LEU 1010.0065
SER 1020.0068
HIS 1030.0067
LEU 1040.0059
SER 1050.0055
THR 1060.0049
LEU 1070.0044
ILE 1080.0043
LEU 1090.0043
THR 1100.0043
GLY 1110.0043
ASN 1120.0039
PRO 1130.0041
ILE 1140.0043
GLN 1150.0046
SER 1160.0047
LEU 1170.0034
ALA 1180.0036
LEU 1190.0032
GLY 1200.0044
ALA 1210.0047
PHE 1220.0045
SER 1230.0048
GLY 1240.0052
LEU 1250.0050
SER 1260.0052
SER 1270.0039
LEU 1280.0035
GLN 1290.0040
LYS 1300.0040
LEU 1310.0031
VAL 1320.0035
ALA 1330.0035
VAL 1340.0041
GLU 1350.0048
THR 1360.0043
ASN 1370.0057
LEU 1380.0046
ALA 1390.0053
SER 1400.0047
LEU 1410.0039
GLU 1420.0055
ASN 1430.0050
PHE 1440.0032
PRO 1450.0027
ILE 1460.0031
GLY 1470.0031
HIS 1480.0031
LEU 1490.0029
LYS 1500.0044
THR 1510.0048
LEU 1520.0036
LYS 1530.0047
GLU 1540.0041
LEU 1550.0025
ASN 1560.0028
VAL 1570.0020
ALA 1580.0032
HIS 1590.0048
ASN 1600.0046
LEU 1610.0058
ILE 1620.0053
GLN 1630.0068
SER 1640.0068
PHE 1650.0057
LYS 1660.0076
LEU 1670.0067
PRO 1680.0074
GLU 1690.0089
TYR 1700.0069
PHE 1710.0068
SER 1720.0083
ASN 1730.0076
LEU 1740.0062
THR 1750.0082
ASN 1760.0078
LEU 1770.0050
GLU 1780.0057
HIS 1790.0044
LEU 1800.0027
ASP 1810.0022
LEU 1820.0008
SER 1830.0022
SER 1840.0041
ASN 1850.0041
LYS 1860.0056
ILE 1870.0048
GLN 1880.0063
SER 1890.0066
ILE 1900.0065
TYR 1910.0087
CYS 1920.0103
THR 1930.0117
ASP 1940.0094
LEU 1950.0093
ARG 1960.0118
VAL 1970.0106
LEU 1980.0099
HIS 1990.0124
GLN 2000.0135
MET 2010.0128
PRO 2020.0129
LEU 2030.0135
LEU 2040.0106
ASN 2050.0096
LEU 2060.0065
SER 2070.0052
LEU 2080.0035
ASP 2090.0026
LEU 2100.0009
SER 2110.0021
LEU 2120.0031
ASN 2130.0025
PRO 2140.0041
MET 2150.0034
ASN 2160.0049
PHE 2170.0055
ILE 2180.0049
GLN 2190.0068
PRO 2200.0066
GLY 2210.0079
ALA 2220.0073
PHE 2230.0064
LYS 2240.0081
GLU 2250.0095
ILE 2260.0082
ARG 2270.0067
LEU 2280.0056
HIS 2290.0065
LYS 2300.0051
LEU 2310.0033
THR 2320.0026
LEU 2330.0018
ARG 2340.0026
ASN 2350.0028
ASN 2360.0019
PHE 2370.0020
ASP 2380.0031
SER 2390.0029
LEU 2400.0023
ASN 2410.0018
VAL 2420.0024
MET 2430.0014
LYS 2440.0009
THR 2450.0015
CYS 2460.0013
ILE 2470.0006
GLN 2480.0014
GLY 2490.0028
LEU 2500.0029
ALA 2510.0036
GLY 2520.0047
LEU 2530.0040
GLU 2540.0052
VAL 2550.0046
HIS 2560.0060
ARG 2570.0050
LEU 2580.0040
VAL 2590.0042
LEU 2600.0037
GLY 2610.0042
GLU 2620.0034
PHE 2630.0035
ARG 2640.0034
ASN 2650.0035
GLU 2660.0036
GLY 2670.0028
ASN 2680.0029
LEU 2690.0028
GLU 2700.0031
LYS 2710.0031
PHE 2720.0036
ASP 2730.0040
LYS 2740.0044
SER 2750.0038
ALA 2760.0034
LEU 2770.0036
GLU 2780.0034
GLY 2790.0027
LEU 2800.0035
CYS 2810.0039
ASN 2820.0029
LEU 2830.0032
THR 2840.0040
ILE 2850.0043
GLU 2860.0051
GLU 2870.0049
PHE 2880.0046
ARG 2890.0048
LEU 2900.0046
ALA 2910.0048
TYR 2920.0034
LEU 2930.0035
ASP 2940.0035
TYR 2950.0035
TYR 2960.0034
LEU 2970.0043
ASP 2980.0045
GLY 2990.0046
ILE 3000.0048
ILE 3010.0054
ASP 3020.0057
LEU 3030.0053
PHE 3040.0053
ASN 3050.0057
CYS 3060.0055
LEU 3070.0055
THR 3080.0055
ASN 3090.0057
VAL 3100.0053
SER 3110.0052
SER 3120.0047
PHE 3130.0046
SER 3140.0044
LEU 3150.0043
VAL 3160.0041
SER 3170.0034
VAL 3180.0038
THR 3190.0038
ILE 3200.0038
GLU 3210.0039
ARG 3220.0038
VAL 3230.0035
LYS 3240.0038
ASP 3250.0043
PHE 3260.0041
SER 3270.0042
TYR 3280.0048
ASN 3290.0052
PHE 3300.0053
GLY 3310.0057
TRP 3320.0048
GLN 3330.0048
HIS 3340.0041
LEU 3350.0036
GLU 3360.0033
LEU 3370.0032
VAL 3380.0030
ASN 3390.0032
CYS 3400.0034
LYS 3410.0037
PHE 3420.0035
GLY 3430.0039
GLN 3440.0035
PHE 3450.0033
PRO 3460.0032
THR 3470.0035
LEU 3480.0035
LYS 3490.0038
LEU 3500.0042
LYS 3510.0049
SER 3520.0053
LEU 3530.0043
LYS 3540.0049
ARG 3550.0041
LEU 3560.0036
THR 3570.0045
PHE 3580.0041
THR 3590.0043
SER 3600.0043
ASN 3610.0039
LYS 3620.0044
GLY 3630.0045
GLY 3640.0046
ASN 3650.0047
ALA 3660.0051
PHE 3670.0048
SER 3680.0044
GLU 3690.0044
VAL 3700.0041
ASP 3710.0043
LEU 3720.0031
PRO 3730.0049
SER 3740.0048
LEU 3750.0039
GLU 3760.0049
PHE 3770.0065
LEU 3780.0063
ASP 3790.0063
LEU 3800.0061
SER 3810.0064
ARG 3820.0074
ASN 3830.0061
GLY 3840.0067
LEU 3850.0060
SER 3860.0061
PHE 3870.0064
LYS 3880.0060
GLY 3890.0061
CYS 3900.0066
CYS 3910.0070
SER 3920.0065
GLN 3930.0060
SER 3940.0057
ASP 3950.0055
PHE 3960.0051
GLY 3970.0033
THR 3980.0040
ILE 3990.0055
SER 4000.0051
LEU 4010.0050
LYS 4020.0089
TYR 4030.0089
LEU 4040.0083
ASP 4050.0084
LEU 4060.0079
SER 4070.0093
PHE 4080.0093
ASN 4090.0082
GLY 4100.0072
VAL 4110.0062
ILE 4120.0069
THR 4130.0061
MET 4140.0064
SER 4150.0059
SER 4160.0065
ASN 4170.0073
PHE 4180.0074
LEU 4190.0072
GLY 4200.0073
LEU 4210.0077
GLU 4220.0091
GLN 4230.0096
LEU 4240.0095
GLU 4250.0105
HIS 4260.0103
LEU 4270.0103
ASP 4280.0102
PHE 4290.0089
GLN 4300.0098
HIS 4310.0095
SER 4320.0089
ASN 4330.0076
LEU 4340.0068
LYS 4350.0055
GLN 4360.0046
MET 4370.0051
SER 4380.0041
GLU 4390.0039
PHE 4400.0048
SER 4410.0059
VAL 4420.0066
PHE 4430.0077
LEU 4440.0078
SER 4450.0086
LEU 4460.0092
ARG 4470.0103
ASN 4480.0111
LEU 4490.0104
ILE 4500.0112
TYR 4510.0107
LEU 4520.0097
ASP 4530.0094
ILE 4540.0075
SER 4550.0082
HIS 4560.0079
THR 4570.0080
HIS 4580.0066
THR 4590.0048
ARG 4600.0032
VAL 4610.0026
ALA 4620.0024
PHE 4630.0029
ASN 4640.0039
GLY 4650.0053
ILE 4660.0051
PHE 4670.0064
ASN 4680.0073
GLY 4690.0088
LEU 4700.0090
SER 4710.0101
SER 4720.0110
LEU 4730.0096
GLU 4740.0099
VAL 4750.0090
LEU 4760.0074
LYS 4770.0071
MET 4780.0051
ALA 4790.0056
GLY 4800.0055
ASN 4810.0037
SER 4820.0034
PHE 4830.0025
GLN 4840.0040
GLU 4850.0060
ASN 4860.0048
PHE 4870.0048
LEU 4880.0037
PRO 4890.0048
ASP 4900.0059
ILE 4910.0053
PHE 4920.0058
THR 4930.0077
GLU 4940.0088
LEU 4950.0080
ARG 4960.0090
ASN 4970.0094
LEU 4980.0075
THR 4990.0071
PHE 5000.0060
LEU 5010.0045
ASP 5020.0034
LEU 5030.0016
SER 5040.0021
GLN 5050.0033
CYS 5060.0023
GLN 5070.0039
LEU 5080.0035
GLU 5090.0053
GLN 5100.0056
LEU 5110.0053
SER 5120.0064
PRO 5130.0071
THR 5140.0072
ALA 5150.0057
PHE 5160.0054
ASN 5170.0071
SER 5180.0076
LEU 5190.0063
SER 5200.0071
SER 5210.0066
LEU 5220.0047
GLN 5230.0038
VAL 5240.0029
LEU 5250.0025
ASN 5260.0018
MET 5270.0027
SER 5280.0023
HIS 5290.0029
ASN 5300.0036
ASN 5310.0046
PHE 5320.0046
PHE 5330.0048
SER 5340.0049
LEU 5350.0049
ASP 5360.0049
THR 5370.0051
PHE 5380.0053
PRO 5390.0052
TYR 5400.0050
LYS 5410.0051
CYS 5420.0061
LEU 5430.0050
ASN 5440.0053
SER 5450.0043
LEU 5460.0041
GLN 5470.0047
VAL 5480.0047
LEU 5490.0047
ASP 5500.0047
TYR 5510.0046
SER 5520.0052
LEU 5530.0052
ASN 5540.0050
HIS 5550.0049
ILE 5560.0048
MET 5570.0042
THR 5580.0036
SER 5590.0032
LYS 5600.0034
LYS 5610.0030
GLN 5620.0037
GLU 5630.0038
LEU 5640.0041
GLN 5650.0046
HIS 5660.0045
PHE 5670.0060
PRO 5680.0058
SER 5690.0066
SER 5700.0060
LEU 5710.0061
ALA 5720.0088
PHE 5730.0083
LEU 5740.0072
ASN 5750.0075
LEU 5760.0065
THR 5770.0080
GLN 5780.0084
ASN 5790.0068
ASP 5800.0066
PHE 5810.0050
ALA 5820.0100
CYS 5830.0089
THR 5840.0123
CYS 5850.0135
GLU 5860.0140
HIS 5870.0076
GLN 5880.0078
SER 5890.0075
PHE 5900.0033
LEU 5910.0027
GLN 5920.0046
TRP 5930.0052
ILE 5940.0041
LYS 5950.0046
ASP 5960.0077
GLN 5970.0076
ARG 5980.0079
GLN 5990.0107
LEU 6000.0102
LEU 6010.0091
VAL 6020.0121
GLU 6030.0119
VAL 6040.0110
GLU 6050.0115
ARG 6060.0117
MET 6070.0103
GLU 6080.0111
CYS 6090.0103
ALA 6100.0130
THR 6110.0138
PRO 6120.0172
SER 6130.0214
ASP 6140.0215
LYS 6150.0167
GLN 6160.0178
GLY 6170.0168
MET 6180.0135
PRO 6190.0106
VAL 6200.0065
LEU 6210.0051
SER 6220.0074
LEU 6230.0082
ASN 6240.0112
ILE 6250.0133
THR 6260.0201
CYS 6270.0578
GLU 10.0295
ALA 20.0325
ALA 30.0319
ALA 40.0151
LYS 50.0160
MET 60.0258
GLN 70.0193
ARG 80.0181
LEU 90.0303
VAL 100.0344
LEU 110.0271
LEU 120.0310
LEU 130.0294
ALA 140.0244
ILE 150.0264
SER 160.0162
LEU 170.0110
LEU 180.0119
LEU 190.0145
TYR 200.0093
GLN 210.0070
ASP 220.0080
LEU 230.0084
PRO 240.0088
VAL 250.0081
ARG 260.0120
SER 270.0087
GLU 280.0110
PHE 290.0105
GLU 300.0067
LEU 310.0050
ASP 320.0060
ARG 330.0050
ILE 340.0033
CYS 350.0037
GLY 360.0042
TYR 370.0054
GLY 380.0034
THR 390.0047
ALA 400.0033
ARG 410.0034
CYS 420.0047
ARG 430.0071
LYS 440.0097
LYS 450.0081
CYS 460.0057
ARG 470.0062
SER 480.0061
GLN 490.0064
GLU 500.0059
TYR 510.0054
ARG 520.0032
ILE 530.0040
GLY 540.0057
ARG 550.0081
CYS 560.0083
PRO 570.0121
ASN 580.0135
THR 590.0130
TYR 600.0103
ALA 610.0050
CYS 620.0044
CYS 630.0038
LEU 640.0034
ARG 650.0045
LYS 660.0065
TRP 670.0066
ASP 680.0050
GLU 690.0047
SER 700.0043
LEU 710.0054
LEU 720.0062
ASN 730.0055
ARG 740.0058
THR 750.0072
LYS 760.0058
PRO 770.0071
GLU 780.0072
ALA 790.0083
ALA 800.0093
ALA 810.0084
LYS 820.0065
LYS 830.0057
GLU 840.0097
MET 850.0072
ASN 860.0105
LEU 870.0055
SER 880.0089
VAL 890.0055
GLY 900.0107
LEU 910.0103
GLY 920.0207
GLY 930.0339
GLY 940.0383
SER 950.0294
ASN 960.0192
LEU 970.0159
SER 980.0164
VAL 990.0145
GLY 1000.0164
LEU 1010.0116
GLY 1020.0101
GLU 1030.0122
ILE 1040.0119
GLY 1050.0148
GLY 1060.0174
GLY 1070.0128
SER 1080.0117
LYS 1090.0095
LEU 1100.0093
LEU 1110.0072
ASP 1120.0089
ILE 1130.0067
ASN 1140.0090
LEU 1150.0080
GLY 1160.0178
ARG 1170.0234
GLY 1180.0273
GLY 1190.0227
GLY 1200.0144
SER 1210.0134
MET 1220.0139
VAL 1230.0111
ASP 1240.0105
LEU 1250.0085
THR 1260.0101
PHE 1270.0104
GLY 1280.0106
GLY 1290.0124
VAL 1300.0118
GLY 1310.0137
GLY 1320.0136
GLY 1330.0122
SER 1340.0139
THR 1350.0129
PHE 1360.0105
THR 1370.0097
PHE 1380.0095
PHE 1390.0094
PRO 1400.0095
LEU 1410.0096
VAL 1420.0160
ILE 1430.0166
GLY 1440.0244
GLY 1450.0279
GLY 1460.0124
SER 1470.0092
ASP 1480.0080
ALA 1490.0096
MET 1500.0096
TYR 1510.0098
LEU 1520.0101
GLY 1530.0110
PHE 1540.0116
ALA 1550.0119
ALA 1560.0139
GLY 1570.0133
GLY 1580.0123
GLY 1590.0117
SER 1600.0110
ALA 1610.0110
GLY 1620.0114
GLY 1630.0104
GLU 1640.0102
ASN 1650.0087
HIS 1660.0086
VAL 1670.0105
ALA 1680.0128
PHE 1690.0154
GLY 1700.0170
PRO 1710.0437
GLY 1720.0453
PRO 1730.0434
GLY 1740.0261
VAL 1750.0114
ASP 1760.0088
LEU 1770.0009
THR 1780.0072
PHE 1790.0069
GLY 1800.0125
GLY 1810.0300
VAL 1820.0318
GLN 1830.0274
PHE 1840.0243
ALA 1850.0247
MET 1860.0156
VAL 1870.0197
ASN 1880.0113
ASN 1890.0116
GLY 1900.0174
PRO 1910.0541
GLY 1920.0400
PRO 1930.0093
GLY 1940.0201
GLU 1950.0252
SER 1960.0357
PHE 1970.0240
THR 1980.0168
ALA 1990.0099
GLN 2000.0039
PRO 2010.0077
ALA 2020.0096
ASP 2030.0140
MET 2040.0109
GLN 2050.0059
ALA 2060.0112
GLY 2070.0123
ILE 2080.0131
LYS 2090.0129
GLY 2100.0170
PRO 2110.0103
GLY 2120.0040
PRO 2130.0152
GLY 2140.0186
GLY 2150.0139
SER 2160.0182
ILE 2170.0143
GLN 2180.0162
VAL 2190.0140
ILE 2200.0164
ASN 2210.0248
GLY 2220.0223
SER 2230.0210
THR 2240.0154
ILE 2250.0126
GLY 2260.0203
THR 2270.0174
GLY 2280.0141
SER 2290.0100
LYS 2300.0126
LYS 2310.0102
THR 2320.0095
ILE 2330.0059
LEU 2340.0061
ILE 2350.0107
TYR 2360.0181
SER 2370.0187
ILE 2380.0187
ILE 2390.0170
GLY 2400.0177
VAL 2410.0159
LYS 2420.0122
LYS 2430.0092
GLY 2440.0081
THR 2450.0097
LEU 2460.0159
ALA 2470.0147
TRP 2480.0137
ALA 2490.0128
ARG 2500.0120
THR 2510.0099
GLY 2520.0033
PHE 2530.0014
SER 2540.0064
PRO 2550.0091
ALA 2560.0068
LYS 2570.0074
LYS 2580.0175
LEU 2590.0280
ASN 2600.0398
ALA 2610.0248
GLY 2620.0179
VAL 2630.0090
VAL 2640.0158
ARG 2650.0153
VAL 2660.0161
PHE 2670.0172
PHE 2680.0162
LEU 2690.0178
ASN 2700.0186
GLN 2710.0172
LYS 2720.0181
LYS 2730.0191
ALA 2740.0163
LYS 2750.0138
ASP 2760.0128
VAL 2770.0119
LEU 2780.0070
ARG 2790.0046
LYS 2800.0086
THR 2810.0128
SER 2820.0288
ARG 2830.0365
PRO 2840.0549
MET 2850.0630
VAL 2860.0737
ASP 2870.0541
LEU 2880.0175
THR 2890.0141
PHE 2900.0528
GLY 2910.0362
GLY 2920.0821

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.