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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 65  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1003
GLU 270.0153
PRO 280.0156
CYS 290.0128
VAL 300.0161
GLU 310.0167
VAL 320.0192
VAL 330.0183
PRO 340.0162
ASN 350.0107
ILE 360.0113
THR 370.0118
TYR 380.0095
GLN 390.0099
CYS 400.0064
MET 410.0069
GLU 420.0063
LEU 430.0063
ASN 440.0045
PHE 450.0037
TYR 460.0041
LYS 470.0050
ILE 480.0029
PRO 490.0048
ASP 500.0077
ASN 510.0102
LEU 520.0065
PRO 530.0048
PHE 540.0024
SER 550.0037
THR 560.0050
LYS 570.0075
ASN 580.0081
LEU 590.0057
ASP 600.0061
LEU 610.0034
SER 620.0047
PHE 630.0040
ASN 640.0022
PRO 650.0020
LEU 660.0028
ARG 670.0039
HIS 680.0043
LEU 690.0048
GLY 700.0051
SER 710.0056
TYR 720.0061
SER 730.0050
PHE 740.0050
PHE 750.0056
SER 760.0049
PHE 770.0043
PRO 780.0064
GLU 790.0064
LEU 800.0060
GLN 810.0080
VAL 820.0075
LEU 830.0066
ASP 840.0062
LEU 850.0055
SER 860.0056
ARG 870.0048
CYS 880.0045
GLU 890.0046
ILE 900.0046
GLN 910.0049
THR 920.0046
ILE 930.0048
GLU 940.0051
ASP 950.0052
GLY 960.0057
ALA 970.0059
TYR 980.0063
GLN 990.0070
SER 1000.0070
LEU 1010.0068
SER 1020.0079
HIS 1030.0081
LEU 1040.0073
SER 1050.0070
THR 1060.0064
LEU 1070.0057
ILE 1080.0053
LEU 1090.0050
THR 1100.0045
GLY 1110.0042
ASN 1120.0046
PRO 1130.0046
ILE 1140.0045
GLN 1150.0045
SER 1160.0045
LEU 1170.0040
ALA 1180.0042
LEU 1190.0034
GLY 1200.0044
ALA 1210.0048
PHE 1220.0050
SER 1230.0055
GLY 1240.0062
LEU 1250.0060
SER 1260.0065
SER 1270.0054
LEU 1280.0046
GLN 1290.0046
LYS 1300.0045
LEU 1310.0034
VAL 1320.0033
ALA 1330.0029
VAL 1340.0030
GLU 1350.0030
THR 1360.0032
ASN 1370.0030
LEU 1380.0024
ALA 1390.0032
SER 1400.0037
LEU 1410.0035
GLU 1420.0042
ASN 1430.0037
PHE 1440.0026
PRO 1450.0027
ILE 1460.0026
GLY 1470.0025
HIS 1480.0024
LEU 1490.0026
LYS 1500.0027
THR 1510.0036
LEU 1520.0028
LYS 1530.0044
GLU 1540.0044
LEU 1550.0030
ASN 1560.0033
VAL 1570.0024
ALA 1580.0028
HIS 1590.0026
ASN 1600.0019
LEU 1610.0021
ILE 1620.0036
GLN 1630.0045
SER 1640.0058
PHE 1650.0065
LYS 1660.0070
LEU 1670.0064
PRO 1680.0060
GLU 1690.0068
TYR 1700.0051
PHE 1710.0056
SER 1720.0063
ASN 1730.0052
LEU 1740.0047
THR 1750.0059
ASN 1760.0058
LEU 1770.0047
GLU 1780.0060
HIS 1790.0057
LEU 1800.0049
ASP 1810.0047
LEU 1820.0050
SER 1830.0049
SER 1840.0042
ASN 1850.0039
LYS 1860.0040
ILE 1870.0058
GLN 1880.0056
SER 1890.0063
ILE 1900.0070
TYR 1910.0076
CYS 1920.0090
THR 1930.0089
ASP 1940.0079
LEU 1950.0086
ARG 1960.0094
VAL 1970.0086
LEU 1980.0089
HIS 1990.0103
GLN 2000.0105
MET 2010.0102
PRO 2020.0110
LEU 2030.0110
LEU 2040.0093
ASN 2050.0091
LEU 2060.0076
SER 2070.0076
LEU 2080.0072
ASP 2090.0069
LEU 2100.0067
SER 2110.0066
LEU 2120.0059
ASN 2130.0059
PRO 2140.0055
MET 2150.0059
ASN 2160.0056
PHE 2170.0058
ILE 2180.0063
GLN 2190.0067
PRO 2200.0070
GLY 2210.0077
ALA 2220.0075
PHE 2230.0078
LYS 2240.0086
GLU 2250.0092
ILE 2260.0086
ARG 2270.0081
LEU 2280.0076
HIS 2290.0079
LYS 2300.0073
LEU 2310.0068
THR 2320.0072
LEU 2330.0064
ARG 2340.0062
ASN 2350.0056
ASN 2360.0056
PHE 2370.0054
ASP 2380.0048
SER 2390.0039
LEU 2400.0036
ASN 2410.0034
VAL 2420.0046
MET 2430.0049
LYS 2440.0043
THR 2450.0048
CYS 2460.0058
ILE 2470.0054
GLN 2480.0053
GLY 2490.0059
LEU 2500.0064
ALA 2510.0063
GLY 2520.0067
LEU 2530.0064
GLU 2540.0069
VAL 2550.0066
HIS 2560.0071
ARG 2570.0060
LEU 2580.0055
VAL 2590.0056
LEU 2600.0049
GLY 2610.0050
GLU 2620.0058
PHE 2630.0070
ARG 2640.0074
ASN 2650.0079
GLU 2660.0068
GLY 2670.0062
ASN 2680.0056
LEU 2690.0047
GLU 2700.0040
LYS 2710.0036
PHE 2720.0040
ASP 2730.0031
LYS 2740.0027
SER 2750.0020
ALA 2760.0030
LEU 2770.0031
GLU 2780.0023
GLY 2790.0030
LEU 2800.0036
CYS 2810.0029
ASN 2820.0043
LEU 2830.0045
THR 2840.0047
ILE 2850.0047
GLU 2860.0049
GLU 2870.0040
PHE 2880.0036
ARG 2890.0043
LEU 2900.0042
ALA 2910.0053
TYR 2920.0060
LEU 2930.0057
ASP 2940.0065
TYR 2950.0058
TYR 2960.0059
LEU 2970.0058
ASP 2980.0059
GLY 2990.0052
ILE 3000.0043
ILE 3010.0040
ASP 3020.0028
LEU 3030.0030
PHE 3040.0029
ASN 3050.0022
CYS 3060.0018
LEU 3070.0018
THR 3080.0014
ASN 3090.0015
VAL 3100.0016
SER 3110.0014
SER 3120.0022
PHE 3130.0026
SER 3140.0035
LEU 3150.0041
VAL 3160.0049
SER 3170.0059
VAL 3180.0056
THR 3190.0060
ILE 3200.0056
GLU 3210.0061
ARG 3220.0056
VAL 3230.0049
LYS 3240.0048
ASP 3250.0043
PHE 3260.0038
SER 3270.0042
TYR 3280.0035
ASN 3290.0034
PHE 3300.0028
GLY 3310.0027
TRP 3320.0021
GLN 3330.0022
HIS 3340.0021
LEU 3350.0022
GLU 3360.0024
LEU 3370.0038
VAL 3380.0042
ASN 3390.0047
CYS 3400.0048
LYS 3410.0051
PHE 3420.0048
GLY 3430.0053
GLN 3440.0046
PHE 3450.0038
PRO 3460.0036
THR 3470.0039
LEU 3480.0036
LYS 3490.0036
LEU 3500.0035
LYS 3510.0037
SER 3520.0035
LEU 3530.0033
LYS 3540.0035
ARG 3550.0032
LEU 3560.0029
THR 3570.0033
PHE 3580.0032
THR 3590.0036
SER 3600.0038
ASN 3610.0036
LYS 3620.0036
GLY 3630.0036
GLY 3640.0032
ASN 3650.0026
ALA 3660.0026
PHE 3670.0033
SER 3680.0031
GLU 3690.0032
VAL 3700.0034
ASP 3710.0035
LEU 3720.0037
PRO 3730.0041
SER 3740.0043
LEU 3750.0041
GLU 3760.0045
PHE 3770.0041
LEU 3780.0040
ASP 3790.0042
LEU 3800.0040
SER 3810.0044
ARG 3820.0052
ASN 3830.0042
GLY 3840.0042
LEU 3850.0031
SER 3860.0029
PHE 3870.0049
LYS 3880.0049
GLY 3890.0050
CYS 3900.0050
CYS 3910.0051
SER 3920.0044
GLN 3930.0043
SER 3940.0041
ASP 3950.0043
PHE 3960.0044
GLY 3970.0039
THR 3980.0042
ILE 3990.0044
SER 4000.0046
LEU 4010.0046
LYS 4020.0047
TYR 4030.0050
LEU 4040.0049
ASP 4050.0053
LEU 4060.0052
SER 4070.0061
PHE 4080.0069
ASN 4090.0062
GLY 4100.0064
VAL 4110.0060
ILE 4120.0061
THR 4130.0061
MET 4140.0058
SER 4150.0059
SER 4160.0056
ASN 4170.0051
PHE 4180.0050
LEU 4190.0048
GLY 4200.0046
LEU 4210.0046
GLU 4220.0044
GLN 4230.0044
LEU 4240.0046
GLU 4250.0045
HIS 4260.0048
LEU 4270.0053
ASP 4280.0061
PHE 4290.0063
GLN 4300.0072
HIS 4310.0079
SER 4320.0072
ASN 4330.0072
LEU 4340.0066
LYS 4350.0067
GLN 4360.0067
MET 4370.0063
SER 4380.0066
GLU 4390.0073
PHE 4400.0065
SER 4410.0053
VAL 4420.0054
PHE 4430.0047
LEU 4440.0045
SER 4450.0042
LEU 4460.0040
ARG 4470.0033
ASN 4480.0032
LEU 4490.0036
ILE 4500.0032
TYR 4510.0038
LEU 4520.0044
ASP 4530.0052
ILE 4540.0055
SER 4550.0061
HIS 4560.0071
THR 4570.0074
HIS 4580.0076
THR 4590.0063
ARG 4600.0064
VAL 4610.0056
ALA 4620.0072
PHE 4630.0066
ASN 4640.0057
GLY 4650.0051
ILE 4660.0049
PHE 4670.0040
ASN 4680.0040
GLY 4690.0033
LEU 4700.0027
SER 4710.0020
SER 4720.0015
LEU 4730.0019
GLU 4740.0014
VAL 4750.0019
LEU 4760.0027
LYS 4770.0028
MET 4780.0034
ALA 4790.0035
GLY 4800.0044
ASN 4810.0048
SER 4820.0051
PHE 4830.0056
GLN 4840.0074
GLU 4850.0082
ASN 4860.0065
PHE 4870.0062
LEU 4880.0051
PRO 4890.0053
ASP 4900.0046
ILE 4910.0037
PHE 4920.0037
THR 4930.0039
GLU 4940.0031
LEU 4950.0026
ARG 4960.0027
ASN 4970.0021
LEU 4980.0023
THR 4990.0022
PHE 5000.0022
LEU 5010.0029
ASP 5020.0020
LEU 5030.0031
SER 5040.0028
GLN 5050.0036
CYS 5060.0044
GLN 5070.0042
LEU 5080.0042
GLU 5090.0055
GLN 5100.0055
LEU 5110.0047
SER 5120.0052
PRO 5130.0054
THR 5140.0050
ALA 5150.0048
PHE 5160.0048
ASN 5170.0051
SER 5180.0045
LEU 5190.0041
SER 5200.0043
SER 5210.0037
LEU 5220.0043
GLN 5230.0044
VAL 5240.0045
LEU 5250.0045
ASN 5260.0046
MET 5270.0050
SER 5280.0050
HIS 5290.0050
ASN 5300.0051
ASN 5310.0051
PHE 5320.0053
PHE 5330.0051
SER 5340.0048
LEU 5350.0050
ASP 5360.0045
THR 5370.0051
PHE 5380.0049
PRO 5390.0052
TYR 5400.0054
LYS 5410.0052
CYS 5420.0054
LEU 5430.0053
ASN 5440.0053
SER 5450.0052
LEU 5460.0055
GLN 5470.0068
VAL 5480.0068
LEU 5490.0062
ASP 5500.0065
TYR 5510.0060
SER 5520.0070
LEU 5530.0071
ASN 5540.0065
HIS 5550.0058
ILE 5560.0051
MET 5570.0059
THR 5580.0050
SER 5590.0045
LYS 5600.0051
LYS 5610.0046
GLN 5620.0063
GLU 5630.0054
LEU 5640.0054
GLN 5650.0061
HIS 5660.0056
PHE 5670.0056
PRO 5680.0057
SER 5690.0063
SER 5700.0065
LEU 5710.0066
ALA 5720.0091
PHE 5730.0087
LEU 5740.0068
ASN 5750.0076
LEU 5760.0061
THR 5770.0084
GLN 5780.0085
ASN 5790.0073
ASP 5800.0069
PHE 5810.0051
ALA 5820.0084
CYS 5830.0070
THR 5840.0135
CYS 5850.0184
GLU 5860.0194
HIS 5870.0114
GLN 5880.0122
SER 5890.0113
PHE 5900.0066
LEU 5910.0077
GLN 5920.0106
TRP 5930.0086
ILE 5940.0076
LYS 5950.0112
ASP 5960.0125
GLN 5970.0086
ARG 5980.0099
GLN 5990.0118
LEU 6000.0093
LEU 6010.0087
VAL 6020.0069
GLU 6030.0085
VAL 6040.0062
GLU 6050.0082
ARG 6060.0092
MET 6070.0079
GLU 6080.0068
CYS 6090.0051
ALA 6100.0077
THR 6110.0091
PRO 6120.0095
SER 6130.0095
ASP 6140.0062
LYS 6150.0052
GLN 6160.0071
GLY 6170.0073
MET 6180.0061
PRO 6190.0075
VAL 6200.0056
LEU 6210.0090
SER 6220.0135
LEU 6230.0103
ASN 6240.0159
ILE 6250.0186
THR 6260.0249
CYS 6270.0355
GLU 10.0114
ALA 20.0094
ALA 30.0100
ALA 40.0047
LYS 50.0015
MET 60.0066
GLN 70.0041
ARG 80.0062
LEU 90.0103
VAL 100.0115
LEU 110.0093
LEU 120.0107
LEU 130.0099
ALA 140.0077
ILE 150.0083
SER 160.0046
LEU 170.0039
LEU 180.0035
LEU 190.0044
TYR 200.0043
GLN 210.0046
ASP 220.0042
LEU 230.0055
PRO 240.0065
VAL 250.0071
ARG 260.0064
SER 270.0043
GLU 280.0047
PHE 290.0038
GLU 300.0020
LEU 310.0017
ASP 320.0022
ARG 330.0012
ILE 340.0014
CYS 350.0025
GLY 360.0020
TYR 370.0019
GLY 380.0020
THR 390.0025
ALA 400.0026
ARG 410.0032
CYS 420.0022
ARG 430.0027
LYS 440.0040
LYS 450.0029
CYS 460.0042
ARG 470.0045
SER 480.0049
GLN 490.0060
GLU 500.0058
TYR 510.0043
ARG 520.0035
ILE 530.0046
GLY 540.0048
ARG 550.0052
CYS 560.0050
PRO 570.0069
ASN 580.0070
THR 590.0071
TYR 600.0049
ALA 610.0023
CYS 620.0024
CYS 630.0031
LEU 640.0041
ARG 650.0052
LYS 660.0069
TRP 670.0076
ASP 680.0058
GLU 690.0060
SER 700.0047
LEU 710.0054
LEU 720.0064
ASN 730.0049
ARG 740.0037
THR 750.0054
LYS 760.0051
PRO 770.0054
GLU 780.0054
ALA 790.0061
ALA 800.0060
ALA 810.0065
LYS 820.0074
LYS 830.0069
GLU 840.0058
MET 850.0062
ASN 860.0034
LEU 870.0039
SER 880.0034
VAL 890.0030
GLY 900.0052
LEU 910.0062
GLY 920.0142
GLY 930.0235
GLY 940.0242
SER 950.0172
ASN 960.0078
LEU 970.0057
SER 980.0042
VAL 990.0054
GLY 1000.0060
LEU 1010.0084
GLY 1020.0081
GLU 1030.0057
ILE 1040.0061
GLY 1050.0069
GLY 1060.0177
GLY 1070.0136
SER 1080.0113
LYS 1090.0050
LEU 1100.0044
LEU 1110.0043
ASP 1120.0048
ILE 1130.0044
ASN 1140.0050
LEU 1150.0049
GLY 1160.0105
ARG 1170.0123
GLY 1180.0136
GLY 1190.0100
GLY 1200.0049
SER 1210.0063
MET 1220.0070
VAL 1230.0063
ASP 1240.0066
LEU 1250.0062
THR 1260.0076
PHE 1270.0082
GLY 1280.0090
GLY 1290.0093
VAL 1300.0099
GLY 1310.0077
GLY 1320.0093
GLY 1330.0077
SER 1340.0100
THR 1350.0082
PHE 1360.0069
THR 1370.0058
PHE 1380.0050
PHE 1390.0039
PRO 1400.0032
LEU 1410.0025
VAL 1420.0042
ILE 1430.0034
GLY 1440.0049
GLY 1450.0053
GLY 1460.0058
SER 1470.0056
ASP 1480.0050
ALA 1490.0047
MET 1500.0040
TYR 1510.0050
LEU 1520.0054
GLY 1530.0059
PHE 1540.0065
ALA 1550.0069
ALA 1560.0115
GLY 1570.0108
GLY 1580.0122
GLY 1590.0103
SER 1600.0091
ALA 1610.0060
GLY 1620.0046
GLY 1630.0042
GLU 1640.0065
ASN 1650.0052
HIS 1660.0061
VAL 1670.0066
ALA 1680.0073
PHE 1690.0082
GLY 1700.0085
PRO 1710.0200
GLY 1720.0211
PRO 1730.0208
GLY 1740.0135
VAL 1750.0069
ASP 1760.0051
LEU 1770.0016
THR 1780.0037
PHE 1790.0032
GLY 1800.0067
GLY 1810.0153
VAL 1820.0154
GLN 1830.0126
PHE 1840.0102
ALA 1850.0097
MET 1860.0052
VAL 1870.0076
ASN 1880.0028
ASN 1890.0061
GLY 1900.0041
PRO 1910.0217
GLY 1920.0157
PRO 1930.0044
GLY 1940.0063
GLU 1950.0090
SER 1960.0149
PHE 1970.0107
THR 1980.0077
ALA 1990.0049
GLN 2000.0007
PRO 2010.0032
ALA 2020.0046
ASP 2030.0058
MET 2040.0040
GLN 2050.0046
ALA 2060.0034
GLY 2070.0082
ILE 2080.0113
LYS 2090.0107
GLY 2100.0217
PRO 2110.0101
GLY 2120.0104
PRO 2130.0105
GLY 2140.0106
GLY 2150.0103
SER 2160.0082
ILE 2170.0095
GLN 2180.0195
VAL 2190.0242
ILE 2200.0340
ASN 2210.0202
GLY 2220.0137
SER 2230.0227
THR 2240.0454
ILE 2250.0457
GLY 2260.0386
THR 2270.0240
GLY 2280.0307
SER 2290.0591
LYS 2300.0426
LYS 2310.0243
THR 2320.0149
ILE 2330.0132
LEU 2340.0240
ILE 2350.0275
TYR 2360.0329
SER 2370.0282
ILE 2380.0229
ILE 2390.0182
GLY 2400.0152
VAL 2410.0159
LYS 2420.0125
LYS 2430.0133
GLY 2440.0135
THR 2450.0120
LEU 2460.0197
ALA 2470.0208
TRP 2480.0236
ALA 2490.0241
ARG 2500.0276
THR 2510.0358
GLY 2520.0258
PHE 2530.0222
SER 2540.0252
PRO 2550.0180
ALA 2560.0171
LYS 2570.0102
LYS 2580.0171
LEU 2590.0296
ASN 2600.0480
ALA 2610.0374
GLY 2620.0266
VAL 2630.0219
VAL 2640.0156
ARG 2650.0206
VAL 2660.0119
PHE 2670.0109
PHE 2680.0109
LEU 2690.0119
ASN 2700.0156
GLN 2710.0135
LYS 2720.0136
LYS 2730.0137
ALA 2740.0116
LYS 2750.0096
ASP 2760.0092
VAL 2770.0072
LEU 2780.0003
ARG 2790.0055
LYS 2800.0108
THR 2810.0225
SER 2820.0400
ARG 2830.0488
PRO 2840.0740
MET 2850.0815
VAL 2860.0963
ASP 2870.0698
LEU 2880.0229
THR 2890.0189
PHE 2900.0638
GLY 2910.0408
GLY 2920.1003

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.