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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 66  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0438
GLU 270.0303
PRO 280.0307
CYS 290.0232
VAL 300.0278
GLU 310.0261
VAL 320.0288
VAL 330.0239
PRO 340.0206
ASN 350.0111
ILE 360.0097
THR 370.0136
TYR 380.0120
GLN 390.0152
CYS 400.0109
MET 410.0135
GLU 420.0147
LEU 430.0147
ASN 440.0115
PHE 450.0092
TYR 460.0096
LYS 470.0120
ILE 480.0098
PRO 490.0133
ASP 500.0216
ASN 510.0248
LEU 520.0154
PRO 530.0130
PHE 540.0144
SER 550.0083
THR 560.0039
LYS 570.0103
ASN 580.0112
LEU 590.0074
ASP 600.0093
LEU 610.0053
SER 620.0089
PHE 630.0088
ASN 640.0045
PRO 650.0034
LEU 660.0054
ARG 670.0077
HIS 680.0087
LEU 690.0102
GLY 700.0111
SER 710.0128
TYR 720.0155
SER 730.0119
PHE 740.0127
PHE 750.0162
SER 760.0155
PHE 770.0132
PRO 780.0181
GLU 790.0158
LEU 800.0134
GLN 810.0166
VAL 820.0150
LEU 830.0133
ASP 840.0127
LEU 850.0114
SER 860.0122
ARG 870.0098
CYS 880.0089
GLU 890.0092
ILE 900.0097
GLN 910.0101
THR 920.0103
ILE 930.0112
GLU 940.0116
ASP 950.0128
GLY 960.0138
ALA 970.0132
TYR 980.0143
GLN 990.0169
SER 1000.0168
LEU 1010.0161
SER 1020.0181
HIS 1030.0183
LEU 1040.0162
SER 1050.0173
THR 1060.0156
LEU 1070.0138
ILE 1080.0131
LEU 1090.0120
THR 1100.0117
GLY 1110.0107
ASN 1120.0107
PRO 1130.0111
ILE 1140.0112
GLN 1150.0114
SER 1160.0113
LEU 1170.0108
ALA 1180.0109
LEU 1190.0110
GLY 1200.0119
ALA 1210.0123
PHE 1220.0132
SER 1230.0140
GLY 1240.0146
LEU 1250.0147
SER 1260.0163
SER 1270.0145
LEU 1280.0132
GLN 1290.0139
LYS 1300.0130
LEU 1310.0114
VAL 1320.0105
ALA 1330.0094
VAL 1340.0094
GLU 1350.0088
THR 1360.0085
ASN 1370.0070
LEU 1380.0061
ALA 1390.0058
SER 1400.0060
LEU 1410.0060
GLU 1420.0063
ASN 1430.0064
PHE 1440.0073
PRO 1450.0078
ILE 1460.0086
GLY 1470.0060
HIS 1480.0078
LEU 1490.0091
LYS 1500.0074
THR 1510.0098
LEU 1520.0082
LYS 1530.0091
GLU 1540.0092
LEU 1550.0081
ASN 1560.0083
VAL 1570.0059
ALA 1580.0068
HIS 1590.0072
ASN 1600.0058
LEU 1610.0050
ILE 1620.0059
GLN 1630.0066
SER 1640.0073
PHE 1650.0080
LYS 1660.0079
LEU 1670.0067
PRO 1680.0062
GLU 1690.0072
TYR 1700.0059
PHE 1710.0058
SER 1720.0059
ASN 1730.0054
LEU 1740.0052
THR 1750.0054
ASN 1760.0064
LEU 1770.0045
GLU 1780.0063
HIS 1790.0065
LEU 1800.0057
ASP 1810.0062
LEU 1820.0067
SER 1830.0071
SER 1840.0072
ASN 1850.0068
LYS 1860.0070
ILE 1870.0086
GLN 1880.0088
SER 1890.0090
ILE 1900.0093
TYR 1910.0095
CYS 1920.0105
THR 1930.0099
ASP 1940.0090
LEU 1950.0097
ARG 1960.0103
VAL 1970.0088
LEU 1980.0094
HIS 1990.0112
GLN 2000.0111
MET 2010.0107
PRO 2020.0112
LEU 2030.0112
LEU 2040.0093
ASN 2050.0093
LEU 2060.0080
SER 2070.0085
LEU 2080.0086
ASP 2090.0087
LEU 2100.0089
SER 2110.0091
LEU 2120.0088
ASN 2130.0088
PRO 2140.0085
MET 2150.0087
ASN 2160.0085
PHE 2170.0089
ILE 2180.0091
GLN 2190.0089
PRO 2200.0088
GLY 2210.0092
ALA 2220.0092
PHE 2230.0095
LYS 2240.0100
GLU 2250.0104
ILE 2260.0100
ARG 2270.0094
LEU 2280.0090
HIS 2290.0092
LYS 2300.0090
LEU 2310.0087
THR 2320.0106
LEU 2330.0086
ARG 2340.0096
ASN 2350.0091
ASN 2360.0073
PHE 2370.0096
ASP 2380.0096
SER 2390.0087
LEU 2400.0080
ASN 2410.0065
VAL 2420.0077
MET 2430.0087
LYS 2440.0070
THR 2450.0064
CYS 2460.0083
ILE 2470.0088
GLN 2480.0075
GLY 2490.0083
LEU 2500.0090
ALA 2510.0080
GLY 2520.0087
LEU 2530.0085
GLU 2540.0088
VAL 2550.0088
HIS 2560.0091
ARG 2570.0084
LEU 2580.0079
VAL 2590.0090
LEU 2600.0088
GLY 2610.0100
GLU 2620.0130
PHE 2630.0161
ARG 2640.0187
ASN 2650.0193
GLU 2660.0159
GLY 2670.0160
ASN 2680.0151
LEU 2690.0138
GLU 2700.0142
LYS 2710.0132
PHE 2720.0133
ASP 2730.0124
LYS 2740.0110
SER 2750.0101
ALA 2760.0109
LEU 2770.0097
GLU 2780.0082
GLY 2790.0079
LEU 2800.0083
CYS 2810.0066
ASN 2820.0069
LEU 2830.0072
THR 2840.0069
ILE 2850.0073
GLU 2860.0072
GLU 2870.0071
PHE 2880.0076
ARG 2890.0094
LEU 2900.0104
ALA 2910.0124
TYR 2920.0149
LEU 2930.0152
ASP 2940.0172
TYR 2950.0167
TYR 2960.0159
LEU 2970.0155
ASP 2980.0157
GLY 2990.0136
ILE 3000.0121
ILE 3010.0123
ASP 3020.0105
LEU 3030.0112
PHE 3040.0097
ASN 3050.0086
CYS 3060.0085
LEU 3070.0074
THR 3080.0058
ASN 3090.0049
VAL 3100.0060
SER 3110.0053
SER 3120.0064
PHE 3130.0072
SER 3140.0087
LEU 3150.0099
VAL 3160.0115
SER 3170.0134
VAL 3180.0131
THR 3190.0131
ILE 3200.0120
GLU 3210.0125
ARG 3220.0116
VAL 3230.0085
LYS 3240.0092
ASP 3250.0099
PHE 3260.0063
SER 3270.0067
TYR 3280.0070
ASN 3290.0050
PHE 3300.0049
GLY 3310.0038
TRP 3320.0043
GLN 3330.0038
HIS 3340.0046
LEU 3350.0043
GLU 3360.0052
LEU 3370.0065
VAL 3380.0085
ASN 3390.0093
CYS 3400.0084
LYS 3410.0080
PHE 3420.0062
GLY 3430.0073
GLN 3440.0050
PHE 3450.0022
PRO 3460.0027
THR 3470.0040
LEU 3480.0025
LYS 3490.0032
LEU 3500.0018
LYS 3510.0014
SER 3520.0013
LEU 3530.0019
LYS 3540.0037
ARG 3550.0045
LEU 3560.0035
THR 3570.0058
PHE 3580.0048
THR 3590.0075
SER 3600.0081
ASN 3610.0050
LYS 3620.0054
GLY 3630.0024
GLY 3640.0013
ASN 3650.0040
ALA 3660.0063
PHE 3670.0072
SER 3680.0060
GLU 3690.0066
VAL 3700.0042
ASP 3710.0038
LEU 3720.0033
PRO 3730.0034
SER 3740.0035
LEU 3750.0050
GLU 3760.0070
PHE 3770.0079
LEU 3780.0079
ASP 3790.0090
LEU 3800.0088
SER 3810.0106
ARG 3820.0123
ASN 3830.0110
GLY 3840.0122
LEU 3850.0109
SER 3860.0116
PHE 3870.0139
LYS 3880.0139
GLY 3890.0132
CYS 3900.0128
CYS 3910.0120
SER 3920.0109
GLN 3930.0095
SER 3940.0090
ASP 3950.0093
PHE 3960.0085
GLY 3970.0071
THR 3980.0076
ILE 3990.0083
SER 4000.0084
LEU 4010.0095
LYS 4020.0104
TYR 4030.0110
LEU 4040.0113
ASP 4050.0119
LEU 4060.0122
SER 4070.0130
PHE 4080.0155
ASN 4090.0156
GLY 4100.0168
VAL 4110.0165
ILE 4120.0151
THR 4130.0150
MET 4140.0136
SER 4150.0137
SER 4160.0125
ASN 4170.0107
PHE 4180.0108
LEU 4190.0105
GLY 4200.0105
LEU 4210.0106
GLU 4220.0103
GLN 4230.0106
LEU 4240.0107
GLU 4250.0102
HIS 4260.0108
LEU 4270.0112
ASP 4280.0120
PHE 4290.0123
GLN 4300.0124
HIS 4310.0133
SER 4320.0156
ASN 4330.0160
LEU 4340.0144
LYS 4350.0152
GLN 4360.0145
MET 4370.0114
SER 4380.0107
GLU 4390.0128
PHE 4400.0114
SER 4410.0091
VAL 4420.0102
PHE 4430.0089
LEU 4440.0081
SER 4450.0085
LEU 4460.0082
ARG 4470.0067
ASN 4480.0078
LEU 4490.0081
ILE 4500.0080
TYR 4510.0090
LEU 4520.0082
ASP 4530.0091
ILE 4540.0085
SER 4550.0083
HIS 4560.0089
THR 4570.0112
HIS 4580.0103
THR 4590.0090
ARG 4600.0078
VAL 4610.0070
ALA 4620.0073
PHE 4630.0078
ASN 4640.0059
GLY 4650.0064
ILE 4660.0063
PHE 4670.0037
ASN 4680.0042
GLY 4690.0044
LEU 4700.0037
SER 4710.0021
SER 4720.0042
LEU 4730.0044
GLU 4740.0062
VAL 4750.0068
LEU 4760.0048
LYS 4770.0051
MET 4780.0035
ALA 4790.0050
GLY 4800.0046
ASN 4810.0031
SER 4820.0014
PHE 4830.0032
GLN 4840.0064
GLU 4850.0081
ASN 4860.0070
PHE 4870.0077
LEU 4880.0066
PRO 4890.0065
ASP 4900.0061
ILE 4910.0036
PHE 4920.0046
THR 4930.0057
GLU 4940.0037
LEU 4950.0040
ARG 4960.0058
ASN 4970.0062
LEU 4980.0065
THR 4990.0083
PHE 5000.0081
LEU 5010.0069
ASP 5020.0068
LEU 5030.0063
SER 5040.0069
GLN 5050.0061
CYS 5060.0053
GLN 5070.0074
LEU 5080.0082
GLU 5090.0098
GLN 5100.0102
LEU 5110.0098
SER 5120.0083
PRO 5130.0088
THR 5140.0087
ALA 5150.0084
PHE 5160.0088
ASN 5170.0090
SER 5180.0088
LEU 5190.0089
SER 5200.0099
SER 5210.0099
LEU 5220.0098
GLN 5230.0100
VAL 5240.0099
LEU 5250.0098
ASN 5260.0097
MET 5270.0101
SER 5280.0104
HIS 5290.0109
ASN 5300.0109
ASN 5310.0112
PHE 5320.0128
PHE 5330.0121
SER 5340.0105
LEU 5350.0092
ASP 5360.0093
THR 5370.0075
PHE 5380.0086
PRO 5390.0101
TYR 5400.0090
LYS 5410.0080
CYS 5420.0096
LEU 5430.0096
ASN 5440.0096
SER 5450.0098
LEU 5460.0095
GLN 5470.0085
VAL 5480.0094
LEU 5490.0096
ASP 5500.0105
TYR 5510.0105
SER 5520.0117
LEU 5530.0134
ASN 5540.0130
HIS 5550.0126
ILE 5560.0105
MET 5570.0093
THR 5580.0082
SER 5590.0082
LYS 5600.0122
LYS 5610.0124
GLN 5620.0109
GLU 5630.0092
LEU 5640.0052
GLN 5650.0051
HIS 5660.0042
PHE 5670.0044
PRO 5680.0050
SER 5690.0037
SER 5700.0053
LEU 5710.0054
ALA 5720.0072
PHE 5730.0087
LEU 5740.0073
ASN 5750.0098
LEU 5760.0086
THR 5770.0120
GLN 5780.0143
ASN 5790.0119
ASP 5800.0125
PHE 5810.0084
ALA 5820.0084
CYS 5830.0024
THR 5840.0088
CYS 5850.0170
GLU 5860.0203
HIS 5870.0120
GLN 5880.0135
SER 5890.0149
PHE 5900.0072
LEU 5910.0075
GLN 5920.0131
TRP 5930.0094
ILE 5940.0079
LYS 5950.0149
ASP 5960.0154
GLN 5970.0098
ARG 5980.0130
GLN 5990.0144
LEU 6000.0100
LEU 6010.0115
VAL 6020.0131
GLU 6030.0144
VAL 6040.0135
GLU 6050.0151
ARG 6060.0147
MET 6070.0141
GLU 6080.0155
CYS 6090.0116
ALA 6100.0150
THR 6110.0131
PRO 6120.0098
SER 6130.0167
ASP 6140.0160
LYS 6150.0139
GLN 6160.0185
GLY 6170.0217
MET 6180.0192
PRO 6190.0183
VAL 6200.0117
LEU 6210.0158
SER 6220.0249
LEU 6230.0177
ASN 6240.0218
ILE 6250.0223
THR 6260.0288
CYS 6270.0303
GLU 10.0118
ALA 20.0127
ALA 30.0103
ALA 40.0093
LYS 50.0119
MET 60.0111
GLN 70.0107
ARG 80.0094
LEU 90.0102
VAL 100.0114
LEU 110.0089
LEU 120.0080
LEU 130.0079
ALA 140.0088
ILE 150.0085
SER 160.0063
LEU 170.0079
LEU 180.0063
LEU 190.0051
TYR 200.0081
GLN 210.0060
ASP 220.0023
LEU 230.0042
PRO 240.0061
VAL 250.0108
ARG 260.0079
SER 270.0064
GLU 280.0062
PHE 290.0060
GLU 300.0050
LEU 310.0051
ASP 320.0047
ARG 330.0045
ILE 340.0043
CYS 350.0039
GLY 360.0066
TYR 370.0076
GLY 380.0070
THR 390.0069
ALA 400.0057
ARG 410.0039
CYS 420.0038
ARG 430.0036
LYS 440.0061
LYS 450.0063
CYS 460.0059
ARG 470.0077
SER 480.0111
GLN 490.0117
GLU 500.0094
TYR 510.0082
ARG 520.0047
ILE 530.0023
GLY 540.0054
ARG 550.0085
CYS 560.0079
PRO 570.0110
ASN 580.0101
THR 590.0110
TYR 600.0079
ALA 610.0045
CYS 620.0026
CYS 630.0036
LEU 640.0058
ARG 650.0088
LYS 660.0153
TRP 670.0161
ASP 680.0136
GLU 690.0150
SER 700.0123
LEU 710.0129
LEU 720.0155
ASN 730.0127
ARG 740.0106
THR 750.0141
LYS 760.0106
PRO 770.0102
GLU 780.0082
ALA 790.0107
ALA 800.0124
ALA 810.0131
LYS 820.0118
LYS 830.0093
GLU 840.0070
MET 850.0050
ASN 860.0038
LEU 870.0041
SER 880.0056
VAL 890.0061
GLY 900.0090
LEU 910.0117
GLY 920.0234
GLY 930.0367
GLY 940.0369
SER 950.0262
ASN 960.0115
LEU 970.0086
SER 980.0061
VAL 990.0053
GLY 1000.0058
LEU 1010.0072
GLY 1020.0104
GLU 1030.0083
ILE 1040.0092
GLY 1050.0075
GLY 1060.0192
GLY 1070.0162
SER 1080.0138
LYS 1090.0075
LEU 1100.0057
LEU 1110.0034
ASP 1120.0037
ILE 1130.0035
ASN 1140.0039
LEU 1150.0037
GLY 1160.0098
ARG 1170.0142
GLY 1180.0136
GLY 1190.0100
GLY 1200.0038
SER 1210.0066
MET 1220.0076
VAL 1230.0058
ASP 1240.0065
LEU 1250.0050
THR 1260.0048
PHE 1270.0045
GLY 1280.0045
GLY 1290.0051
VAL 1300.0055
GLY 1310.0030
GLY 1320.0030
GLY 1330.0033
SER 1340.0039
THR 1350.0044
PHE 1360.0031
THR 1370.0028
PHE 1380.0021
PHE 1390.0012
PRO 1400.0015
LEU 1410.0059
VAL 1420.0137
ILE 1430.0142
GLY 1440.0224
GLY 1450.0238
GLY 1460.0136
SER 1470.0109
ASP 1480.0062
ALA 1490.0083
MET 1500.0055
TYR 1510.0058
LEU 1520.0043
GLY 1530.0035
PHE 1540.0024
ALA 1550.0021
ALA 1560.0034
GLY 1570.0047
GLY 1580.0045
GLY 1590.0054
SER 1600.0054
ALA 1610.0072
GLY 1620.0069
GLY 1630.0057
GLU 1640.0057
ASN 1650.0047
HIS 1660.0045
VAL 1670.0052
ALA 1680.0062
PHE 1690.0072
GLY 1700.0079
PRO 1710.0278
GLY 1720.0302
PRO 1730.0289
GLY 1740.0172
VAL 1750.0059
ASP 1760.0037
LEU 1770.0036
THR 1780.0042
PHE 1790.0063
GLY 1800.0083
GLY 1810.0169
VAL 1820.0191
GLN 1830.0160
PHE 1840.0157
ALA 1850.0153
MET 1860.0105
VAL 1870.0110
ASN 1880.0053
ASN 1890.0038
GLY 1900.0141
PRO 1910.0300
GLY 1920.0232
PRO 1930.0056
GLY 1940.0116
GLU 1950.0122
SER 1960.0227
PHE 1970.0156
THR 1980.0129
ALA 1990.0099
GLN 2000.0016
PRO 2010.0038
ALA 2020.0055
ASP 2030.0073
MET 2040.0063
GLN 2050.0067
ALA 2060.0041
GLY 2070.0096
ILE 2080.0113
LYS 2090.0108
GLY 2100.0196
PRO 2110.0094
GLY 2120.0128
PRO 2130.0083
GLY 2140.0103
GLY 2150.0208
SER 2160.0086
ILE 2170.0167
GLN 2180.0176
VAL 2190.0118
ILE 2200.0248
ASN 2210.0132
GLY 2220.0101
SER 2230.0211
THR 2240.0279
ILE 2250.0282
GLY 2260.0138
THR 2270.0157
GLY 2280.0263
SER 2290.0438
LYS 2300.0296
LYS 2310.0161
THR 2320.0066
ILE 2330.0153
LEU 2340.0178
ILE 2350.0241
TYR 2360.0243
SER 2370.0220
ILE 2380.0275
ILE 2390.0223
GLY 2400.0291
VAL 2410.0337
LYS 2420.0277
LYS 2430.0294
GLY 2440.0317
THR 2450.0298
LEU 2460.0369
ALA 2470.0250
TRP 2480.0253
ALA 2490.0170
ARG 2500.0219
THR 2510.0209
GLY 2520.0162
PHE 2530.0115
SER 2540.0091
PRO 2550.0040
ALA 2560.0072
LYS 2570.0089
LYS 2580.0114
LEU 2590.0132
ASN 2600.0160
ALA 2610.0172
GLY 2620.0131
VAL 2630.0114
VAL 2640.0133
ARG 2650.0075
VAL 2660.0060
PHE 2670.0052
PHE 2680.0056
LEU 2690.0052
ASN 2700.0065
GLN 2710.0048
LYS 2720.0055
LYS 2730.0059
ALA 2740.0034
LYS 2750.0035
ASP 2760.0072
VAL 2770.0074
LEU 2780.0084
ARG 2790.0090
LYS 2800.0088
THR 2810.0099
SER 2820.0056
ARG 2830.0062
PRO 2840.0102
MET 2850.0131
VAL 2860.0207
ASP 2870.0178
LEU 2880.0095
THR 2890.0085
PHE 2900.0133
GLY 2910.0120
GLY 2920.0195

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.