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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 67  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0545
GLU 270.0113
PRO 280.0119
CYS 290.0093
VAL 300.0104
GLU 310.0113
VAL 320.0113
VAL 330.0129
PRO 340.0132
ASN 350.0109
ILE 360.0103
THR 370.0077
TYR 380.0062
GLN 390.0054
CYS 400.0055
MET 410.0056
GLU 420.0079
LEU 430.0089
ASN 440.0100
PHE 450.0083
TYR 460.0095
LYS 470.0084
ILE 480.0057
PRO 490.0051
ASP 500.0046
ASN 510.0062
LEU 520.0056
PRO 530.0065
PHE 540.0060
SER 550.0082
THR 560.0063
LYS 570.0066
ASN 580.0051
LEU 590.0032
ASP 600.0025
LEU 610.0035
SER 620.0038
PHE 630.0059
ASN 640.0066
PRO 650.0089
LEU 660.0078
ARG 670.0092
HIS 680.0085
LEU 690.0072
GLY 700.0069
SER 710.0067
TYR 720.0063
SER 730.0056
PHE 740.0049
PHE 750.0048
SER 760.0039
PHE 770.0043
PRO 780.0063
GLU 790.0066
LEU 800.0051
GLN 810.0057
VAL 820.0051
LEU 830.0048
ASP 840.0050
LEU 850.0056
SER 860.0062
ARG 870.0069
CYS 880.0063
GLU 890.0082
ILE 900.0081
GLN 910.0098
THR 920.0086
ILE 930.0078
GLU 940.0077
ASP 950.0078
GLY 960.0069
ALA 970.0069
TYR 980.0066
GLN 990.0070
SER 1000.0061
LEU 1010.0061
SER 1020.0068
HIS 1030.0063
LEU 1040.0060
SER 1050.0064
THR 1060.0065
LEU 1070.0064
ILE 1080.0069
LEU 1090.0070
THR 1100.0077
GLY 1110.0080
ASN 1120.0073
PRO 1130.0080
ILE 1140.0082
GLN 1150.0088
SER 1160.0087
LEU 1170.0062
ALA 1180.0063
LEU 1190.0061
GLY 1200.0067
ALA 1210.0069
PHE 1220.0064
SER 1230.0062
GLY 1240.0060
LEU 1250.0062
SER 1260.0062
SER 1270.0059
LEU 1280.0059
GLN 1290.0068
LYS 1300.0069
LEU 1310.0061
VAL 1320.0068
ALA 1330.0063
VAL 1340.0077
GLU 1350.0083
THR 1360.0070
ASN 1370.0074
LEU 1380.0058
ALA 1390.0061
SER 1400.0048
LEU 1410.0035
GLU 1420.0047
ASN 1430.0043
PHE 1440.0028
PRO 1450.0026
ILE 1460.0040
GLY 1470.0029
HIS 1480.0046
LEU 1490.0048
LYS 1500.0060
THR 1510.0070
LEU 1520.0056
LYS 1530.0066
GLU 1540.0061
LEU 1550.0045
ASN 1560.0054
VAL 1570.0042
ALA 1580.0060
HIS 1590.0081
ASN 1600.0073
LEU 1610.0084
ILE 1620.0072
GLN 1630.0090
SER 1640.0085
PHE 1650.0069
LYS 1660.0083
LEU 1670.0063
PRO 1680.0069
GLU 1690.0086
TYR 1700.0065
PHE 1710.0064
SER 1720.0081
ASN 1730.0079
LEU 1740.0062
THR 1750.0085
ASN 1760.0082
LEU 1770.0048
GLU 1780.0050
HIS 1790.0037
LEU 1800.0019
ASP 1810.0027
LEU 1820.0029
SER 1830.0042
SER 1840.0066
ASN 1850.0069
LYS 1860.0086
ILE 1870.0076
GLN 1880.0091
SER 1890.0092
ILE 1900.0086
TYR 1910.0104
CYS 1920.0114
THR 1930.0125
ASP 1940.0101
LEU 1950.0094
ARG 1960.0117
VAL 1970.0101
LEU 1980.0092
HIS 1990.0118
GLN 2000.0128
MET 2010.0117
PRO 2020.0115
LEU 2030.0115
LEU 2040.0087
ASN 2050.0070
LEU 2060.0040
SER 2070.0021
LEU 2080.0021
ASP 2090.0018
LEU 2100.0033
SER 2110.0037
LEU 2120.0053
ASN 2130.0058
PRO 2140.0067
MET 2150.0065
ASN 2160.0074
PHE 2170.0079
ILE 2180.0073
GLN 2190.0084
PRO 2200.0079
GLY 2210.0082
ALA 2220.0080
PHE 2230.0068
LYS 2240.0073
GLU 2250.0075
ILE 2260.0070
ARG 2270.0048
LEU 2280.0042
HIS 2290.0041
LYS 2300.0033
LEU 2310.0033
THR 2320.0049
LEU 2330.0039
ARG 2340.0042
ASN 2350.0042
ASN 2360.0038
PHE 2370.0047
ASP 2380.0055
SER 2390.0046
LEU 2400.0035
ASN 2410.0025
VAL 2420.0038
MET 2430.0028
LYS 2440.0013
THR 2450.0020
CYS 2460.0034
ILE 2470.0030
GLN 2480.0029
GLY 2490.0041
LEU 2500.0043
ALA 2510.0040
GLY 2520.0050
LEU 2530.0051
GLU 2540.0053
VAL 2550.0051
HIS 2560.0055
ARG 2570.0062
LEU 2580.0047
VAL 2590.0040
LEU 2600.0027
GLY 2610.0022
GLU 2620.0052
PHE 2630.0081
ARG 2640.0105
ASN 2650.0115
GLU 2660.0087
GLY 2670.0090
ASN 2680.0075
LEU 2690.0060
GLU 2700.0072
LYS 2710.0060
PHE 2720.0046
ASP 2730.0056
LYS 2740.0058
SER 2750.0054
ALA 2760.0028
LEU 2770.0027
GLU 2780.0045
GLY 2790.0040
LEU 2800.0048
CYS 2810.0067
ASN 2820.0052
LEU 2830.0055
THR 2840.0065
ILE 2850.0065
GLU 2860.0074
GLU 2870.0082
PHE 2880.0061
ARG 2890.0050
LEU 2900.0030
ALA 2910.0039
TYR 2920.0062
LEU 2930.0052
ASP 2940.0073
TYR 2950.0067
TYR 2960.0070
LEU 2970.0057
ASP 2980.0074
GLY 2990.0059
ILE 3000.0048
ILE 3010.0078
ASP 3020.0081
LEU 3030.0055
PHE 3040.0057
ASN 3050.0084
CYS 3060.0084
LEU 3070.0080
THR 3080.0093
ASN 3090.0110
VAL 3100.0098
SER 3110.0109
SER 3120.0101
PHE 3130.0076
SER 3140.0066
LEU 3150.0045
VAL 3160.0056
SER 3170.0069
VAL 3180.0047
THR 3190.0054
ILE 3200.0041
GLU 3210.0058
ARG 3220.0053
VAL 3230.0036
LYS 3240.0055
ASP 3250.0062
PHE 3260.0060
SER 3270.0072
TYR 3280.0087
ASN 3290.0100
PHE 3300.0098
GLY 3310.0114
TRP 3320.0098
GLN 3330.0111
HIS 3340.0101
LEU 3350.0085
GLU 3360.0081
LEU 3370.0072
VAL 3380.0087
ASN 3390.0090
CYS 3400.0065
LYS 3410.0063
PHE 3420.0051
GLY 3430.0053
GLN 3440.0041
PHE 3450.0042
PRO 3460.0043
THR 3470.0055
LEU 3480.0064
LYS 3490.0077
LEU 3500.0088
LYS 3510.0103
SER 3520.0105
LEU 3530.0098
LYS 3540.0108
ARG 3550.0102
LEU 3560.0095
THR 3570.0110
PHE 3580.0092
THR 3590.0105
SER 3600.0105
ASN 3610.0083
LYS 3620.0093
GLY 3630.0074
GLY 3640.0061
ASN 3650.0066
ALA 3660.0057
PHE 3670.0065
SER 3680.0060
GLU 3690.0065
VAL 3700.0070
ASP 3710.0079
LEU 3720.0077
PRO 3730.0085
SER 3740.0083
LEU 3750.0084
GLU 3760.0095
PHE 3770.0129
LEU 3780.0114
ASP 3790.0113
LEU 3800.0100
SER 3810.0108
ARG 3820.0110
ASN 3830.0097
GLY 3840.0093
LEU 3850.0083
SER 3860.0074
PHE 3870.0069
LYS 3880.0058
GLY 3890.0065
CYS 3900.0075
CYS 3910.0090
SER 3920.0086
GLN 3930.0093
SER 3940.0088
ASP 3950.0084
PHE 3960.0091
GLY 3970.0074
THR 3980.0084
ILE 3990.0098
SER 4000.0097
LEU 4010.0101
LYS 4020.0145
TYR 4030.0138
LEU 4040.0119
ASP 4050.0116
LEU 4060.0099
SER 4070.0101
PHE 4080.0101
ASN 4090.0090
GLY 4100.0076
VAL 4110.0062
ILE 4120.0062
THR 4130.0051
MET 4140.0059
SER 4150.0065
SER 4160.0082
ASN 4170.0086
PHE 4180.0098
LEU 4190.0109
GLY 4200.0126
LEU 4210.0122
GLU 4220.0142
GLN 4230.0157
LEU 4240.0141
GLU 4250.0152
HIS 4260.0142
LEU 4270.0108
ASP 4280.0103
PHE 4290.0086
GLN 4300.0092
HIS 4310.0088
SER 4320.0076
ASN 4330.0057
LEU 4340.0047
LYS 4350.0033
GLN 4360.0036
MET 4370.0034
SER 4380.0037
GLU 4390.0055
PHE 4400.0068
SER 4410.0072
VAL 4420.0069
PHE 4430.0086
LEU 4440.0099
SER 4450.0123
LEU 4460.0122
ARG 4470.0142
ASN 4480.0155
LEU 4490.0134
ILE 4500.0142
TYR 4510.0131
LEU 4520.0092
ASP 4530.0088
ILE 4540.0068
SER 4550.0077
HIS 4560.0075
THR 4570.0043
HIS 4580.0041
THR 4590.0025
ARG 4600.0035
VAL 4610.0031
ALA 4620.0053
PHE 4630.0058
ASN 4640.0062
GLY 4650.0071
ILE 4660.0050
PHE 4670.0059
ASN 4680.0086
GLY 4690.0110
LEU 4700.0101
SER 4710.0115
SER 4720.0128
LEU 4730.0102
GLU 4740.0106
VAL 4750.0099
LEU 4760.0072
LYS 4770.0065
MET 4780.0049
ALA 4790.0067
GLY 4800.0073
ASN 4810.0053
SER 4820.0062
PHE 4830.0058
GLN 4840.0078
GLU 4850.0103
ASN 4860.0088
PHE 4870.0077
LEU 4880.0054
PRO 4890.0058
ASP 4900.0057
ILE 4910.0043
PHE 4920.0041
THR 4930.0070
GLU 4940.0085
LEU 4950.0067
ARG 4960.0074
ASN 4970.0083
LEU 4980.0060
THR 4990.0067
PHE 5000.0065
LEU 5010.0045
ASP 5020.0051
LEU 5030.0049
SER 5040.0067
GLN 5050.0076
CYS 5060.0063
GLN 5070.0088
LEU 5080.0078
GLU 5090.0087
GLN 5100.0079
LEU 5110.0064
SER 5120.0069
PRO 5130.0069
THR 5140.0060
ALA 5150.0045
PHE 5160.0032
ASN 5170.0047
SER 5180.0049
LEU 5190.0031
SER 5200.0035
SER 5210.0036
LEU 5220.0023
GLN 5230.0034
VAL 5240.0042
LEU 5250.0041
ASN 5260.0055
MET 5270.0056
SER 5280.0066
HIS 5290.0075
ASN 5300.0072
ASN 5310.0078
PHE 5320.0065
PHE 5330.0061
SER 5340.0054
LEU 5350.0050
ASP 5360.0048
THR 5370.0050
PHE 5380.0050
PRO 5390.0048
TYR 5400.0046
LYS 5410.0044
CYS 5420.0042
LEU 5430.0034
ASN 5440.0031
SER 5450.0027
LEU 5460.0032
GLN 5470.0039
VAL 5480.0046
LEU 5490.0049
ASP 5500.0055
TYR 5510.0059
SER 5520.0058
LEU 5530.0064
ASN 5540.0061
HIS 5550.0058
ILE 5560.0048
MET 5570.0028
THR 5580.0026
SER 5590.0028
LYS 5600.0029
LYS 5610.0031
GLN 5620.0023
GLU 5630.0031
LEU 5640.0032
GLN 5650.0036
HIS 5660.0043
PHE 5670.0047
PRO 5680.0046
SER 5690.0045
SER 5700.0044
LEU 5710.0045
ALA 5720.0051
PHE 5730.0053
LEU 5740.0049
ASN 5750.0053
LEU 5760.0047
THR 5770.0049
GLN 5780.0051
ASN 5790.0040
ASP 5800.0033
PHE 5810.0022
ALA 5820.0027
CYS 5830.0055
THR 5840.0070
CYS 5850.0087
GLU 5860.0080
HIS 5870.0039
GLN 5880.0045
SER 5890.0032
PHE 5900.0008
LEU 5910.0026
GLN 5920.0027
TRP 5930.0016
ILE 5940.0037
LYS 5950.0049
ASP 5960.0039
GLN 5970.0043
ARG 5980.0052
GLN 5990.0065
LEU 6000.0061
LEU 6010.0056
VAL 6020.0078
GLU 6030.0070
VAL 6040.0068
GLU 6050.0064
ARG 6060.0048
MET 6070.0066
GLU 6080.0067
CYS 6090.0056
ALA 6100.0050
THR 6110.0046
PRO 6120.0086
SER 6130.0107
ASP 6140.0137
LYS 6150.0114
GLN 6160.0100
GLY 6170.0100
MET 6180.0101
PRO 6190.0090
VAL 6200.0063
LEU 6210.0070
SER 6220.0120
LEU 6230.0104
ASN 6240.0119
ILE 6250.0097
THR 6260.0131
CYS 6270.0280
GLU 10.0356
ALA 20.0434
ALA 30.0409
ALA 40.0244
LYS 50.0295
MET 60.0362
GLN 70.0306
ARG 80.0261
LEU 90.0376
VAL 100.0427
LEU 110.0330
LEU 120.0356
LEU 130.0334
ALA 140.0298
ILE 150.0317
SER 160.0183
LEU 170.0114
LEU 180.0136
LEU 190.0181
TYR 200.0126
GLN 210.0077
ASP 220.0092
LEU 230.0079
PRO 240.0080
VAL 250.0064
ARG 260.0135
SER 270.0117
GLU 280.0147
PHE 290.0150
GLU 300.0118
LEU 310.0113
ASP 320.0112
ARG 330.0109
ILE 340.0110
CYS 350.0111
GLY 360.0108
TYR 370.0128
GLY 380.0115
THR 390.0124
ALA 400.0111
ARG 410.0090
CYS 420.0083
ARG 430.0090
LYS 440.0111
LYS 450.0125
CYS 460.0120
ARG 470.0114
SER 480.0125
GLN 490.0120
GLU 500.0124
TYR 510.0152
ARG 520.0132
ILE 530.0144
GLY 540.0135
ARG 550.0127
CYS 560.0120
PRO 570.0154
ASN 580.0154
THR 590.0134
TYR 600.0118
ALA 610.0104
CYS 620.0117
CYS 630.0108
LEU 640.0121
ARG 650.0116
LYS 660.0139
TRP 670.0137
ASP 680.0109
GLU 690.0092
SER 700.0089
LEU 710.0110
LEU 720.0119
ASN 730.0101
ARG 740.0111
THR 750.0134
LYS 760.0094
PRO 770.0097
GLU 780.0105
ALA 790.0097
ALA 800.0096
ALA 810.0144
LYS 820.0136
LYS 830.0128
GLU 840.0116
MET 850.0109
ASN 860.0095
LEU 870.0076
SER 880.0088
VAL 890.0066
GLY 900.0087
LEU 910.0082
GLY 920.0135
GLY 930.0182
GLY 940.0223
SER 950.0149
ASN 960.0105
LEU 970.0063
SER 980.0086
VAL 990.0047
GLY 1000.0074
LEU 1010.0071
GLY 1020.0096
GLU 1030.0118
ILE 1040.0077
GLY 1050.0110
GLY 1060.0180
GLY 1070.0176
SER 1080.0205
LYS 1090.0167
LEU 1100.0194
LEU 1110.0165
ASP 1120.0174
ILE 1130.0136
ASN 1140.0156
LEU 1150.0129
GLY 1160.0289
ARG 1170.0326
GLY 1180.0356
GLY 1190.0261
GLY 1200.0126
SER 1210.0140
MET 1220.0135
VAL 1230.0096
ASP 1240.0082
LEU 1250.0049
THR 1260.0052
PHE 1270.0058
GLY 1280.0090
GLY 1290.0106
VAL 1300.0124
GLY 1310.0209
GLY 1320.0163
GLY 1330.0101
SER 1340.0081
THR 1350.0076
PHE 1360.0096
THR 1370.0098
PHE 1380.0089
PHE 1390.0089
PRO 1400.0085
LEU 1410.0090
VAL 1420.0166
ILE 1430.0149
GLY 1440.0221
GLY 1450.0243
GLY 1460.0071
SER 1470.0079
ASP 1480.0089
ALA 1490.0081
MET 1500.0082
TYR 1510.0046
LEU 1520.0065
GLY 1530.0070
PHE 1540.0092
ALA 1550.0100
ALA 1560.0121
GLY 1570.0123
GLY 1580.0085
GLY 1590.0095
SER 1600.0130
ALA 1610.0115
GLY 1620.0122
GLY 1630.0108
GLU 1640.0082
ASN 1650.0057
HIS 1660.0046
VAL 1670.0076
ALA 1680.0099
PHE 1690.0130
GLY 1700.0154
PRO 1710.0423
GLY 1720.0444
PRO 1730.0439
GLY 1740.0263
VAL 1750.0125
ASP 1760.0057
LEU 1770.0041
THR 1780.0010
PHE 1790.0046
GLY 1800.0054
GLY 1810.0138
VAL 1820.0162
GLN 1830.0134
PHE 1840.0135
ALA 1850.0133
MET 1860.0154
VAL 1870.0164
ASN 1880.0090
ASN 1890.0182
GLY 1900.0139
PRO 1910.0545
GLY 1920.0399
PRO 1930.0117
GLY 1940.0173
GLU 1950.0286
SER 1960.0435
PHE 1970.0307
THR 1980.0198
ALA 1990.0113
GLN 2000.0074
PRO 2010.0098
ALA 2020.0105
ASP 2030.0152
MET 2040.0135
GLN 2050.0088
ALA 2060.0177
GLY 2070.0131
ILE 2080.0092
LYS 2090.0031
GLY 2100.0014
PRO 2110.0064
GLY 2120.0103
PRO 2130.0126
GLY 2140.0117
GLY 2150.0240
SER 2160.0121
ILE 2170.0201
GLN 2180.0125
VAL 2190.0290
ILE 2200.0329
ASN 2210.0353
GLY 2220.0275
SER 2230.0078
THR 2240.0174
ILE 2250.0218
GLY 2260.0341
THR 2270.0338
GLY 2280.0200
SER 2290.0052
LYS 2300.0075
LYS 2310.0107
THR 2320.0190
ILE 2330.0269
LEU 2340.0317
ILE 2350.0449
TYR 2360.0333
SER 2370.0275
ILE 2380.0182
ILE 2390.0125
GLY 2400.0040
VAL 2410.0098
LYS 2420.0083
LYS 2430.0084
GLY 2440.0071
THR 2450.0065
LEU 2460.0104
ALA 2470.0074
TRP 2480.0154
ALA 2490.0188
ARG 2500.0270
THR 2510.0373
GLY 2520.0281
PHE 2530.0220
SER 2540.0149
PRO 2550.0140
ALA 2560.0150
LYS 2570.0106
LYS 2580.0155
LEU 2590.0216
ASN 2600.0254
ALA 2610.0212
GLY 2620.0210
VAL 2630.0151
VAL 2640.0192
ARG 2650.0164
VAL 2660.0162
PHE 2670.0168
PHE 2680.0172
LEU 2690.0180
ASN 2700.0202
GLN 2710.0098
LYS 2720.0095
LYS 2730.0138
ALA 2740.0099
LYS 2750.0056
ASP 2760.0074
VAL 2770.0065
LEU 2780.0040
ARG 2790.0046
LYS 2800.0068
THR 2810.0044
SER 2820.0041
ARG 2830.0054
PRO 2840.0115
MET 2850.0160
VAL 2860.0247
ASP 2870.0251
LEU 2880.0174
THR 2890.0180
PHE 2900.0163
GLY 2910.0202
GLY 2920.0239

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.