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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 68  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0630
GLU 270.0177
PRO 280.0150
CYS 290.0158
VAL 300.0160
GLU 310.0186
VAL 320.0203
VAL 330.0227
PRO 340.0228
ASN 350.0228
ILE 360.0228
THR 370.0198
TYR 380.0172
GLN 390.0145
CYS 400.0130
MET 410.0110
GLU 420.0096
LEU 430.0111
ASN 440.0116
PHE 450.0140
TYR 460.0153
LYS 470.0164
ILE 480.0174
PRO 490.0177
ASP 500.0194
ASN 510.0192
LEU 520.0183
PRO 530.0195
PHE 540.0201
SER 550.0205
THR 560.0194
LYS 570.0187
ASN 580.0163
LEU 590.0149
ASP 600.0126
LEU 610.0118
SER 620.0106
PHE 630.0094
ASN 640.0109
PRO 650.0120
LEU 660.0143
ARG 670.0149
HIS 680.0168
LEU 690.0171
GLY 700.0191
SER 710.0201
TYR 720.0190
SER 730.0172
PHE 740.0175
PHE 750.0193
SER 760.0186
PHE 770.0174
PRO 780.0184
GLU 790.0170
LEU 800.0161
GLN 810.0154
VAL 820.0121
LEU 830.0120
ASP 840.0098
LEU 850.0102
SER 860.0086
ARG 870.0091
CYS 880.0105
GLU 890.0118
ILE 900.0137
GLN 910.0157
THR 920.0169
ILE 930.0166
GLU 940.0186
ASP 950.0196
GLY 960.0184
ALA 970.0168
TYR 980.0161
GLN 990.0179
SER 1000.0173
LEU 1010.0156
SER 1020.0157
HIS 1030.0127
LEU 1040.0110
SER 1050.0099
THR 1060.0081
LEU 1070.0094
ILE 1080.0082
LEU 1090.0097
THR 1100.0089
GLY 1110.0089
ASN 1120.0096
PRO 1130.0117
ILE 1140.0137
GLN 1150.0162
SER 1160.0178
LEU 1170.0148
ALA 1180.0165
LEU 1190.0174
GLY 1200.0168
ALA 1210.0148
PHE 1220.0134
SER 1230.0156
GLY 1240.0145
LEU 1250.0117
SER 1260.0125
SER 1270.0094
LEU 1280.0090
GLN 1290.0092
LYS 1300.0085
LEU 1310.0090
VAL 1320.0093
ALA 1330.0097
VAL 1340.0097
GLU 1350.0093
THR 1360.0095
ASN 1370.0085
LEU 1380.0080
ALA 1390.0070
SER 1400.0072
LEU 1410.0080
GLU 1420.0105
ASN 1430.0102
PHE 1440.0102
PRO 1450.0108
ILE 1460.0111
GLY 1470.0110
HIS 1480.0107
LEU 1490.0104
LYS 1500.0108
THR 1510.0107
LEU 1520.0098
LYS 1530.0107
GLU 1540.0107
LEU 1550.0107
ASN 1560.0106
VAL 1570.0090
ALA 1580.0089
HIS 1590.0085
ASN 1600.0084
LEU 1610.0082
ILE 1620.0076
GLN 1630.0071
SER 1640.0083
PHE 1650.0092
LYS 1660.0103
LEU 1670.0099
PRO 1680.0101
GLU 1690.0112
TYR 1700.0104
PHE 1710.0105
SER 1720.0126
ASN 1730.0126
LEU 1740.0115
THR 1750.0127
ASN 1760.0121
LEU 1770.0110
GLU 1780.0118
HIS 1790.0113
LEU 1800.0109
ASP 1810.0106
LEU 1820.0097
SER 1830.0093
SER 1840.0091
ASN 1850.0094
LYS 1860.0093
ILE 1870.0114
GLN 1880.0111
SER 1890.0115
ILE 1900.0112
TYR 1910.0132
CYS 1920.0097
THR 1930.0102
ASP 1940.0106
LEU 1950.0095
ARG 1960.0099
VAL 1970.0113
LEU 1980.0100
HIS 1990.0105
GLN 2000.0125
MET 2010.0127
PRO 2020.0146
LEU 2030.0147
LEU 2040.0128
ASN 2050.0128
LEU 2060.0114
SER 2070.0122
LEU 2080.0119
ASP 2090.0116
LEU 2100.0114
SER 2110.0113
LEU 2120.0114
ASN 2130.0125
PRO 2140.0130
MET 2150.0129
ASN 2160.0144
PHE 2170.0152
ILE 2180.0144
GLN 2190.0140
PRO 2200.0138
GLY 2210.0133
ALA 2220.0128
PHE 2230.0128
LYS 2240.0128
GLU 2250.0131
ILE 2260.0130
ARG 2270.0146
LEU 2280.0144
HIS 2290.0143
LYS 2300.0138
LEU 2310.0134
THR 2320.0135
LEU 2330.0135
ARG 2340.0130
ASN 2350.0132
ASN 2360.0141
PHE 2370.0162
ASP 2380.0169
SER 2390.0165
LEU 2400.0162
ASN 2410.0200
VAL 2420.0184
MET 2430.0164
LYS 2440.0175
THR 2450.0194
CYS 2460.0183
ILE 2470.0176
GLN 2480.0180
GLY 2490.0182
LEU 2500.0169
ALA 2510.0167
GLY 2520.0164
LEU 2530.0162
GLU 2540.0158
VAL 2550.0153
HIS 2560.0149
ARG 2570.0150
LEU 2580.0145
VAL 2590.0135
LEU 2600.0126
GLY 2610.0111
GLU 2620.0112
PHE 2630.0121
ARG 2640.0107
ASN 2650.0139
GLU 2660.0147
GLY 2670.0145
ASN 2680.0116
LEU 2690.0125
GLU 2700.0124
LYS 2710.0136
PHE 2720.0127
ASP 2730.0163
LYS 2740.0190
SER 2750.0217
ALA 2760.0188
LEU 2770.0173
GLU 2780.0206
GLY 2790.0220
LEU 2800.0189
CYS 2810.0202
ASN 2820.0184
LEU 2830.0178
THR 2840.0167
ILE 2850.0156
GLU 2860.0146
GLU 2870.0137
PHE 2880.0124
ARG 2890.0107
LEU 2900.0092
ALA 2910.0092
TYR 2920.0071
LEU 2930.0062
ASP 2940.0047
TYR 2950.0067
TYR 2960.0091
LEU 2970.0137
ASP 2980.0191
GLY 2990.0198
ILE 3000.0184
ILE 3010.0242
ASP 3020.0230
LEU 3030.0188
PHE 3040.0170
ASN 3050.0216
CYS 3060.0228
LEU 3070.0174
THR 3080.0181
ASN 3090.0192
VAL 3100.0156
SER 3110.0126
SER 3120.0106
PHE 3130.0087
SER 3140.0060
LEU 3150.0040
VAL 3160.0043
SER 3170.0056
VAL 3180.0050
THR 3190.0095
ILE 3200.0138
GLU 3210.0191
ARG 3220.0225
VAL 3230.0199
LYS 3240.0248
ASP 3250.0236
PHE 3260.0194
SER 3270.0228
TYR 3280.0240
ASN 3290.0226
PHE 3300.0196
GLY 3310.0187
TRP 3320.0125
GLN 3330.0095
HIS 3340.0065
LEU 3350.0057
GLU 3360.0027
LEU 3370.0038
VAL 3380.0056
ASN 3390.0086
CYS 3400.0079
LYS 3410.0123
PHE 3420.0156
GLY 3430.0207
GLN 3440.0212
PHE 3450.0179
PRO 3460.0165
THR 3470.0201
LEU 3480.0167
LYS 3490.0185
LEU 3500.0161
LYS 3510.0166
SER 3520.0120
LEU 3530.0091
LYS 3540.0049
ARG 3550.0027
LEU 3560.0042
THR 3570.0034
PHE 3580.0063
THR 3590.0080
SER 3600.0109
ASN 3610.0109
LYS 3620.0150
GLY 3630.0170
GLY 3640.0192
ASN 3650.0170
ALA 3660.0190
PHE 3670.0166
SER 3680.0179
GLU 3690.0180
VAL 3700.0151
ASP 3710.0155
LEU 3720.0116
PRO 3730.0108
SER 3740.0074
LEU 3750.0062
GLU 3760.0037
PHE 3770.0033
LEU 3780.0054
ASP 3790.0058
LEU 3800.0080
SER 3810.0086
ARG 3820.0105
ASN 3830.0108
GLY 3840.0130
LEU 3850.0126
SER 3860.0144
PHE 3870.0127
LYS 3880.0128
GLY 3890.0122
CYS 3900.0118
CYS 3910.0111
SER 3920.0130
GLN 3930.0107
SER 3940.0127
ASP 3950.0133
PHE 3960.0108
GLY 3970.0120
THR 3980.0092
ILE 3990.0083
SER 4000.0056
LEU 4010.0067
LYS 4020.0066
TYR 4030.0065
LEU 4040.0075
ASP 4050.0074
LEU 4060.0084
SER 4070.0077
PHE 4080.0082
ASN 4090.0086
GLY 4100.0096
VAL 4110.0104
ILE 4120.0100
THR 4130.0104
MET 4140.0103
SER 4150.0105
SER 4160.0101
ASN 4170.0103
PHE 4180.0097
LEU 4190.0100
GLY 4200.0096
LEU 4210.0091
GLU 4220.0092
GLN 4230.0080
LEU 4240.0079
GLU 4250.0078
HIS 4260.0073
LEU 4270.0073
ASP 4280.0065
PHE 4290.0065
GLN 4300.0058
HIS 4310.0053
SER 4320.0060
ASN 4330.0068
LEU 4340.0073
LYS 4350.0080
GLN 4360.0087
MET 4370.0068
SER 4380.0068
GLU 4390.0071
PHE 4400.0074
SER 4410.0076
VAL 4420.0084
PHE 4430.0083
LEU 4440.0091
SER 4450.0091
LEU 4460.0084
ARG 4470.0090
ASN 4480.0085
LEU 4490.0077
ILE 4500.0073
TYR 4510.0065
LEU 4520.0056
ASP 4530.0047
ILE 4540.0043
SER 4550.0036
HIS 4560.0031
THR 4570.0044
HIS 4580.0029
THR 4590.0024
ARG 4600.0014
VAL 4610.0014
ALA 4620.0036
PHE 4630.0043
ASN 4640.0045
GLY 4650.0057
ILE 4660.0057
PHE 4670.0052
ASN 4680.0063
GLY 4690.0071
LEU 4700.0064
SER 4710.0072
SER 4720.0070
LEU 4730.0057
GLU 4740.0052
VAL 4750.0040
LEU 4760.0033
LYS 4770.0025
MET 4780.0020
ALA 4790.0017
GLY 4800.0022
ASN 4810.0026
SER 4820.0042
PHE 4830.0036
GLN 4840.0046
GLU 4850.0063
ASN 4860.0057
PHE 4870.0057
LEU 4880.0040
PRO 4890.0031
ASP 4900.0021
ILE 4910.0014
PHE 4920.0014
THR 4930.0019
GLU 4940.0034
LEU 4950.0032
ARG 4960.0042
ASN 4970.0044
LEU 4980.0029
THR 4990.0027
PHE 5000.0019
LEU 5010.0021
ASP 5020.0028
LEU 5030.0037
SER 5040.0044
GLN 5050.0055
CYS 5060.0054
GLN 5070.0083
LEU 5080.0079
GLU 5090.0087
GLN 5100.0083
LEU 5110.0074
SER 5120.0070
PRO 5130.0069
THR 5140.0053
ALA 5150.0047
PHE 5160.0038
ASN 5170.0028
SER 5180.0016
LEU 5190.0014
SER 5200.0024
SER 5210.0024
LEU 5220.0021
GLN 5230.0024
VAL 5240.0033
LEU 5250.0042
ASN 5260.0054
MET 5270.0073
SER 5280.0079
HIS 5290.0091
ASN 5300.0094
ASN 5310.0106
PHE 5320.0117
PHE 5330.0119
SER 5340.0117
LEU 5350.0112
ASP 5360.0119
THR 5370.0094
PHE 5380.0100
PRO 5390.0092
TYR 5400.0078
LYS 5410.0080
CYS 5420.0044
LEU 5430.0038
ASN 5440.0035
SER 5450.0024
LEU 5460.0037
GLN 5470.0053
VAL 5480.0062
LEU 5490.0074
ASP 5500.0082
TYR 5510.0094
SER 5520.0098
LEU 5530.0100
ASN 5540.0109
HIS 5550.0111
ILE 5560.0110
MET 5570.0111
THR 5580.0122
SER 5590.0132
LYS 5600.0149
LYS 5610.0158
GLN 5620.0153
GLU 5630.0139
LEU 5640.0123
GLN 5650.0117
HIS 5660.0108
PHE 5670.0090
PRO 5680.0064
SER 5690.0063
SER 5700.0043
LEU 5710.0062
ALA 5720.0095
PHE 5730.0096
LEU 5740.0099
ASN 5750.0099
LEU 5760.0102
THR 5770.0094
GLN 5780.0084
ASN 5790.0094
ASP 5800.0083
PHE 5810.0085
ALA 5820.0073
CYS 5830.0078
THR 5840.0091
CYS 5850.0128
GLU 5860.0131
HIS 5870.0125
GLN 5880.0140
SER 5890.0169
PHE 5900.0151
LEU 5910.0125
GLN 5920.0137
TRP 5930.0147
ILE 5940.0123
LYS 5950.0123
ASP 5960.0147
GLN 5970.0121
ARG 5980.0098
GLN 5990.0107
LEU 6000.0118
LEU 6010.0097
VAL 6020.0094
GLU 6030.0081
VAL 6040.0077
GLU 6050.0064
ARG 6060.0067
MET 6070.0071
GLU 6080.0046
CYS 6090.0045
ALA 6100.0035
THR 6110.0037
PRO 6120.0049
SER 6130.0048
ASP 6140.0080
LYS 6150.0065
GLN 6160.0030
GLY 6170.0007
MET 6180.0034
PRO 6190.0046
VAL 6200.0076
LEU 6210.0091
SER 6220.0073
LEU 6230.0103
ASN 6240.0157
ILE 6250.0191
THR 6260.0237
CYS 6270.0630
GLU 10.0113
ALA 20.0086
ALA 30.0061
ALA 40.0090
LYS 50.0095
MET 60.0062
GLN 70.0080
ARG 80.0094
LEU 90.0079
VAL 100.0082
LEU 110.0067
LEU 120.0054
LEU 130.0062
ALA 140.0067
ILE 150.0051
SER 160.0037
LEU 170.0039
LEU 180.0046
LEU 190.0045
TYR 200.0038
GLN 210.0044
ASP 220.0055
LEU 230.0044
PRO 240.0053
VAL 250.0042
ARG 260.0047
SER 270.0052
GLU 280.0049
PHE 290.0071
GLU 300.0087
LEU 310.0082
ASP 320.0083
ARG 330.0104
ILE 340.0130
CYS 350.0152
GLY 360.0145
TYR 370.0114
GLY 380.0121
THR 390.0155
ALA 400.0169
ARG 410.0122
CYS 420.0096
ARG 430.0077
LYS 440.0106
LYS 450.0081
CYS 460.0091
ARG 470.0090
SER 480.0093
GLN 490.0119
GLU 500.0117
TYR 510.0114
ARG 520.0133
ILE 530.0213
GLY 540.0243
ARG 550.0251
CYS 560.0212
PRO 570.0251
ASN 580.0221
THR 590.0252
TYR 600.0172
ALA 610.0121
CYS 620.0136
CYS 630.0111
LEU 640.0147
ARG 650.0142
LYS 660.0130
TRP 670.0132
ASP 680.0122
GLU 690.0099
SER 700.0114
LEU 710.0106
LEU 720.0095
ASN 730.0092
ARG 740.0104
THR 750.0100
LYS 760.0086
PRO 770.0117
GLU 780.0135
ALA 790.0168
ALA 800.0168
ALA 810.0155
LYS 820.0151
LYS 830.0131
GLU 840.0111
MET 850.0101
ASN 860.0069
LEU 870.0058
SER 880.0046
VAL 890.0034
GLY 900.0026
LEU 910.0018
GLY 920.0012
GLY 930.0015
GLY 940.0027
SER 950.0019
ASN 960.0023
LEU 970.0021
SER 980.0044
VAL 990.0048
GLY 1000.0069
LEU 1010.0080
GLY 1020.0087
GLU 1030.0094
ILE 1040.0043
GLY 1050.0067
GLY 1060.0148
GLY 1070.0138
SER 1080.0145
LYS 1090.0102
LEU 1100.0105
LEU 1110.0094
ASP 1120.0089
ILE 1130.0068
ASN 1140.0073
LEU 1150.0058
GLY 1160.0085
ARG 1170.0084
GLY 1180.0067
GLY 1190.0048
GLY 1200.0030
SER 1210.0024
MET 1220.0030
VAL 1230.0017
ASP 1240.0027
LEU 1250.0021
THR 1260.0043
PHE 1270.0054
GLY 1280.0084
GLY 1290.0098
VAL 1300.0110
GLY 1310.0133
GLY 1320.0085
GLY 1330.0018
SER 1340.0054
THR 1350.0060
PHE 1360.0057
THR 1370.0064
PHE 1380.0047
PHE 1390.0054
PRO 1400.0039
LEU 1410.0043
VAL 1420.0044
ILE 1430.0030
GLY 1440.0030
GLY 1450.0029
GLY 1460.0015
SER 1470.0019
ASP 1480.0025
ALA 1490.0031
MET 1500.0036
TYR 1510.0032
LEU 1520.0040
GLY 1530.0061
PHE 1540.0070
ALA 1550.0090
ALA 1560.0141
GLY 1570.0151
GLY 1580.0144
GLY 1590.0108
SER 1600.0070
ALA 1610.0070
GLY 1620.0067
GLY 1630.0071
GLU 1640.0056
ASN 1650.0028
HIS 1660.0022
VAL 1670.0011
ALA 1680.0021
PHE 1690.0027
GLY 1700.0042
PRO 1710.0169
GLY 1720.0176
PRO 1730.0171
GLY 1740.0094
VAL 1750.0035
ASP 1760.0010
LEU 1770.0013
THR 1780.0012
PHE 1790.0023
GLY 1800.0022
GLY 1810.0040
VAL 1820.0052
GLN 1830.0056
PHE 1840.0064
ALA 1850.0077
MET 1860.0091
VAL 1870.0104
ASN 1880.0071
ASN 1890.0126
GLY 1900.0105
PRO 1910.0271
GLY 1920.0211
PRO 1930.0096
GLY 1940.0116
GLU 1950.0183
SER 1960.0242
PHE 1970.0186
THR 1980.0102
ALA 1990.0048
GLN 2000.0072
PRO 2010.0065
ALA 2020.0070
ASP 2030.0080
MET 2040.0105
GLN 2050.0118
ALA 2060.0129
GLY 2070.0092
ILE 2080.0051
LYS 2090.0045
GLY 2100.0079
PRO 2110.0066
GLY 2120.0025
PRO 2130.0023
GLY 2140.0062
GLY 2150.0075
SER 2160.0102
ILE 2170.0059
GLN 2180.0074
VAL 2190.0089
ILE 2200.0134
ASN 2210.0149
GLY 2220.0104
SER 2230.0055
THR 2240.0082
ILE 2250.0096
GLY 2260.0096
THR 2270.0047
GLY 2280.0060
SER 2290.0098
LYS 2300.0064
LYS 2310.0066
THR 2320.0051
ILE 2330.0036
LEU 2340.0029
ILE 2350.0033
TYR 2360.0077
SER 2370.0079
ILE 2380.0072
ILE 2390.0063
GLY 2400.0061
VAL 2410.0066
LYS 2420.0063
LYS 2430.0067
GLY 2440.0078
THR 2450.0075
LEU 2460.0064
ALA 2470.0053
TRP 2480.0048
ALA 2490.0045
ARG 2500.0047
THR 2510.0047
GLY 2520.0040
PHE 2530.0022
SER 2540.0041
PRO 2550.0047
ALA 2560.0086
LYS 2570.0099
LYS 2580.0101
LEU 2590.0127
ASN 2600.0146
ALA 2610.0118
GLY 2620.0080
VAL 2630.0038
VAL 2640.0032
ARG 2650.0043
VAL 2660.0084
PHE 2670.0090
PHE 2680.0099
LEU 2690.0104
ASN 2700.0112
GLN 2710.0071
LYS 2720.0082
LYS 2730.0106
ALA 2740.0094
LYS 2750.0091
ASP 2760.0114
VAL 2770.0097
LEU 2780.0086
ARG 2790.0093
LYS 2800.0098
THR 2810.0066
SER 2820.0044
ARG 2830.0046
PRO 2840.0110
MET 2850.0161
VAL 2860.0216
ASP 2870.0186
LEU 2880.0086
THR 2890.0085
PHE 2900.0141
GLY 2910.0113
GLY 2920.0208

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.