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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 69  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0677
GLU 270.0120
PRO 280.0092
CYS 290.0072
VAL 300.0093
GLU 310.0137
VAL 320.0163
VAL 330.0199
PRO 340.0199
ASN 350.0178
ILE 360.0175
THR 370.0139
TYR 380.0094
GLN 390.0064
CYS 400.0023
MET 410.0040
GLU 420.0054
LEU 430.0048
ASN 440.0066
PHE 450.0047
TYR 460.0058
LYS 470.0049
ILE 480.0022
PRO 490.0034
ASP 500.0058
ASN 510.0086
LEU 520.0083
PRO 530.0110
PHE 540.0106
SER 550.0133
THR 560.0114
LYS 570.0124
ASN 580.0106
LEU 590.0074
ASP 600.0063
LEU 610.0047
SER 620.0067
PHE 630.0076
ASN 640.0064
PRO 650.0074
LEU 660.0060
ARG 670.0068
HIS 680.0062
LEU 690.0062
GLY 700.0064
SER 710.0075
TYR 720.0063
SER 730.0048
PHE 740.0059
PHE 750.0067
SER 760.0063
PHE 770.0069
PRO 780.0090
GLU 790.0099
LEU 800.0085
GLN 810.0097
VAL 820.0084
LEU 830.0072
ASP 840.0070
LEU 850.0068
SER 860.0080
ARG 870.0077
CYS 880.0071
GLU 890.0075
ILE 900.0074
GLN 910.0079
THR 920.0076
ILE 930.0077
GLU 940.0080
ASP 950.0088
GLY 960.0086
ALA 970.0072
TYR 980.0077
GLN 990.0087
SER 1000.0084
LEU 1010.0083
SER 1020.0095
HIS 1030.0083
LEU 1040.0072
SER 1050.0071
THR 1060.0064
LEU 1070.0066
ILE 1080.0067
LEU 1090.0067
THR 1100.0074
GLY 1110.0076
ASN 1120.0070
PRO 1130.0071
ILE 1140.0073
GLN 1150.0077
SER 1160.0081
LEU 1170.0081
ALA 1180.0087
LEU 1190.0089
GLY 1200.0087
ALA 1210.0080
PHE 1220.0076
SER 1230.0084
GLY 1240.0080
LEU 1250.0071
SER 1260.0076
SER 1270.0055
LEU 1280.0055
GLN 1290.0060
LYS 1300.0062
LEU 1310.0060
VAL 1320.0063
ALA 1330.0055
VAL 1340.0062
GLU 1350.0057
THR 1360.0046
ASN 1370.0030
LEU 1380.0028
ALA 1390.0035
SER 1400.0040
LEU 1410.0042
GLU 1420.0047
ASN 1430.0046
PHE 1440.0043
PRO 1450.0044
ILE 1460.0048
GLY 1470.0036
HIS 1480.0049
LEU 1490.0053
LYS 1500.0049
THR 1510.0057
LEU 1520.0057
LYS 1530.0067
GLU 1540.0065
LEU 1550.0058
ASN 1560.0057
VAL 1570.0050
ALA 1580.0052
HIS 1590.0040
ASN 1600.0031
LEU 1610.0031
ILE 1620.0050
GLN 1630.0059
SER 1640.0064
PHE 1650.0069
LYS 1660.0068
LEU 1670.0063
PRO 1680.0056
GLU 1690.0059
TYR 1700.0052
PHE 1710.0060
SER 1720.0062
ASN 1730.0062
LEU 1740.0058
THR 1750.0068
ASN 1760.0066
LEU 1770.0061
GLU 1780.0063
HIS 1790.0061
LEU 1800.0060
ASP 1810.0058
LEU 1820.0065
SER 1830.0065
SER 1840.0061
ASN 1850.0060
LYS 1860.0063
ILE 1870.0082
GLN 1880.0080
SER 1890.0077
ILE 1900.0075
TYR 1910.0074
CYS 1920.0073
THR 1930.0076
ASP 1940.0077
LEU 1950.0076
ARG 1960.0077
VAL 1970.0076
LEU 1980.0075
HIS 1990.0081
GLN 2000.0084
MET 2010.0082
PRO 2020.0090
LEU 2030.0088
LEU 2040.0078
ASN 2050.0074
LEU 2060.0070
SER 2070.0079
LEU 2080.0079
ASP 2090.0084
LEU 2100.0083
SER 2110.0087
LEU 2120.0103
ASN 2130.0097
PRO 2140.0097
MET 2150.0088
ASN 2160.0086
PHE 2170.0078
ILE 2180.0070
GLN 2190.0062
PRO 2200.0051
GLY 2210.0046
ALA 2220.0058
PHE 2230.0059
LYS 2240.0049
GLU 2250.0051
ILE 2260.0063
ARG 2270.0065
LEU 2280.0075
HIS 2290.0085
LYS 2300.0087
LEU 2310.0082
THR 2320.0103
LEU 2330.0096
ARG 2340.0120
ASN 2350.0132
ASN 2360.0118
PHE 2370.0126
ASP 2380.0149
SER 2390.0130
LEU 2400.0101
ASN 2410.0107
VAL 2420.0104
MET 2430.0083
LYS 2440.0064
THR 2450.0072
CYS 2460.0073
ILE 2470.0053
GLN 2480.0039
GLY 2490.0052
LEU 2500.0048
ALA 2510.0023
GLY 2520.0041
LEU 2530.0053
GLU 2540.0067
VAL 2550.0078
HIS 2560.0095
ARG 2570.0105
LEU 2580.0085
VAL 2590.0098
LEU 2600.0086
GLY 2610.0099
GLU 2620.0140
PHE 2630.0185
ARG 2640.0211
ASN 2650.0246
GLU 2660.0224
GLY 2670.0207
ASN 2680.0172
LEU 2690.0146
GLU 2700.0158
LYS 2710.0125
PHE 2720.0080
ASP 2730.0067
LYS 2740.0043
SER 2750.0051
ALA 2760.0050
LEU 2770.0026
GLU 2780.0022
GLY 2790.0019
LEU 2800.0033
CYS 2810.0043
ASN 2820.0036
LEU 2830.0048
THR 2840.0070
ILE 2850.0082
GLU 2860.0105
GLU 2870.0111
PHE 2880.0092
ARG 2890.0100
LEU 2900.0089
ALA 2910.0111
TYR 2920.0128
LEU 2930.0107
ASP 2940.0131
TYR 2950.0108
TYR 2960.0087
LEU 2970.0053
ASP 2980.0047
GLY 2990.0029
ILE 3000.0025
ILE 3010.0045
ASP 3020.0042
LEU 3030.0023
PHE 3040.0043
ASN 3050.0056
CYS 3060.0055
LEU 3070.0071
THR 3080.0083
ASN 3090.0103
VAL 3100.0104
SER 3110.0126
SER 3120.0125
PHE 3130.0104
SER 3140.0107
LEU 3150.0093
VAL 3160.0110
SER 3170.0117
VAL 3180.0086
THR 3190.0072
ILE 3200.0044
GLU 3210.0036
ARG 3220.0029
VAL 3230.0035
LYS 3240.0048
ASP 3250.0048
PHE 3260.0061
SER 3270.0069
TYR 3280.0074
ASN 3290.0091
PHE 3300.0091
GLY 3310.0109
TRP 3320.0103
GLN 3330.0116
HIS 3340.0113
LEU 3350.0102
GLU 3360.0103
LEU 3370.0090
VAL 3380.0104
ASN 3390.0102
CYS 3400.0077
LYS 3410.0064
PHE 3420.0043
GLY 3430.0036
GLN 3440.0031
PHE 3450.0039
PRO 3460.0043
THR 3470.0057
LEU 3480.0068
LYS 3490.0076
LEU 3500.0088
LYS 3510.0098
SER 3520.0099
LEU 3530.0095
LYS 3540.0102
ARG 3550.0099
LEU 3560.0089
THR 3570.0088
PHE 3580.0073
THR 3590.0081
SER 3600.0079
ASN 3610.0062
LYS 3620.0060
GLY 3630.0051
GLY 3640.0039
ASN 3650.0033
ALA 3660.0032
PHE 3670.0042
SER 3680.0044
GLU 3690.0049
VAL 3700.0055
ASP 3710.0062
LEU 3720.0072
PRO 3730.0071
SER 3740.0075
LEU 3750.0074
GLU 3760.0074
PHE 3770.0077
LEU 3780.0064
ASP 3790.0059
LEU 3800.0046
SER 3810.0049
ARG 3820.0044
ASN 3830.0043
GLY 3840.0042
LEU 3850.0028
SER 3860.0038
PHE 3870.0040
LYS 3880.0042
GLY 3890.0042
CYS 3900.0041
CYS 3910.0043
SER 3920.0041
GLN 3930.0043
SER 3940.0043
ASP 3950.0045
PHE 3960.0052
GLY 3970.0055
THR 3980.0056
ILE 3990.0053
SER 4000.0058
LEU 4010.0059
LYS 4020.0056
TYR 4030.0052
LEU 4040.0042
ASP 4050.0039
LEU 4060.0030
SER 4070.0021
PHE 4080.0028
ASN 4090.0032
GLY 4100.0042
VAL 4110.0048
ILE 4120.0043
THR 4130.0043
MET 4140.0044
SER 4150.0045
SER 4160.0046
ASN 4170.0044
PHE 4180.0044
LEU 4190.0039
GLY 4200.0040
LEU 4210.0046
GLU 4220.0044
GLN 4230.0051
LEU 4240.0051
GLU 4250.0057
HIS 4260.0058
LEU 4270.0046
ASP 4280.0041
PHE 4290.0036
GLN 4300.0032
HIS 4310.0029
SER 4320.0044
ASN 4330.0043
LEU 4340.0043
LYS 4350.0043
GLN 4360.0043
MET 4370.0040
SER 4380.0035
GLU 4390.0036
PHE 4400.0044
SER 4410.0051
VAL 4420.0047
PHE 4430.0052
LEU 4440.0051
SER 4450.0053
LEU 4460.0058
ARG 4470.0061
ASN 4480.0067
LEU 4490.0064
ILE 4500.0070
TYR 4510.0067
LEU 4520.0054
ASP 4530.0047
ILE 4540.0035
SER 4550.0033
HIS 4560.0032
THR 4570.0051
HIS 4580.0039
THR 4590.0029
ARG 4600.0014
VAL 4610.0019
ALA 4620.0021
PHE 4630.0035
ASN 4640.0046
GLY 4650.0055
ILE 4660.0048
PHE 4670.0051
ASN 4680.0060
GLY 4690.0070
LEU 4700.0070
SER 4710.0081
SER 4720.0086
LEU 4730.0073
GLU 4740.0074
VAL 4750.0064
LEU 4760.0051
LYS 4770.0040
MET 4780.0028
ALA 4790.0031
GLY 4800.0036
ASN 4810.0025
SER 4820.0032
PHE 4830.0023
GLN 4840.0038
GLU 4850.0060
ASN 4860.0051
PHE 4870.0047
LEU 4880.0032
PRO 4890.0042
ASP 4900.0052
ILE 4910.0046
PHE 4920.0049
THR 4930.0068
GLU 4940.0078
LEU 4950.0070
ARG 4960.0081
ASN 4970.0082
LEU 4980.0062
THR 4990.0058
PHE 5000.0048
LEU 5010.0031
ASP 5020.0027
LEU 5030.0018
SER 5040.0036
GLN 5050.0050
CYS 5060.0040
GLN 5070.0057
LEU 5080.0047
GLU 5090.0061
GLN 5100.0056
LEU 5110.0045
SER 5120.0052
PRO 5130.0058
THR 5140.0056
ALA 5150.0040
PHE 5160.0035
ASN 5170.0053
SER 5180.0060
LEU 5190.0048
SER 5200.0056
SER 5210.0056
LEU 5220.0031
GLN 5230.0030
VAL 5240.0027
LEU 5250.0015
ASN 5260.0030
MET 5270.0038
SER 5280.0049
HIS 5290.0064
ASN 5300.0064
ASN 5310.0075
PHE 5320.0065
PHE 5330.0070
SER 5340.0065
LEU 5350.0058
ASP 5360.0055
THR 5370.0044
PHE 5380.0043
PRO 5390.0037
TYR 5400.0033
LYS 5410.0035
CYS 5420.0035
LEU 5430.0020
ASN 5440.0024
SER 5450.0017
LEU 5460.0014
GLN 5470.0027
VAL 5480.0034
LEU 5490.0038
ASP 5500.0046
TYR 5510.0053
SER 5520.0056
LEU 5530.0062
ASN 5540.0066
HIS 5550.0069
ILE 5560.0064
MET 5570.0060
THR 5580.0059
SER 5590.0056
LYS 5600.0056
LYS 5610.0054
GLN 5620.0053
GLU 5630.0048
LEU 5640.0050
GLN 5650.0048
HIS 5660.0042
PHE 5670.0048
PRO 5680.0037
SER 5690.0038
SER 5700.0029
LEU 5710.0039
ALA 5720.0062
PHE 5730.0060
LEU 5740.0059
ASN 5750.0058
LEU 5760.0056
THR 5770.0049
GLN 5780.0046
ASN 5790.0048
ASP 5800.0043
PHE 5810.0041
ALA 5820.0033
CYS 5830.0036
THR 5840.0058
CYS 5850.0079
GLU 5860.0087
HIS 5870.0063
GLN 5880.0071
SER 5890.0092
PHE 5900.0077
LEU 5910.0054
GLN 5920.0061
TRP 5930.0076
ILE 5940.0063
LYS 5950.0058
ASP 5960.0079
GLN 5970.0071
ARG 5980.0067
GLN 5990.0080
LEU 6000.0080
LEU 6010.0069
VAL 6020.0061
GLU 6030.0056
VAL 6040.0049
GLU 6050.0052
ARG 6060.0048
MET 6070.0050
GLU 6080.0042
CYS 6090.0034
ALA 6100.0037
THR 6110.0048
PRO 6120.0083
SER 6130.0102
ASP 6140.0114
LYS 6150.0082
GLN 6160.0073
GLY 6170.0073
MET 6180.0067
PRO 6190.0053
VAL 6200.0031
LEU 6210.0036
SER 6220.0067
LEU 6230.0050
ASN 6240.0079
ILE 6250.0104
THR 6260.0156
CYS 6270.0677
GLU 10.0161
ALA 20.0189
ALA 30.0189
ALA 40.0147
LYS 50.0157
MET 60.0168
GLN 70.0159
ARG 80.0134
LEU 90.0159
VAL 100.0182
LEU 110.0139
LEU 120.0141
LEU 130.0132
ALA 140.0129
ILE 150.0135
SER 160.0081
LEU 170.0045
LEU 180.0055
LEU 190.0088
TYR 200.0075
GLN 210.0053
ASP 220.0062
LEU 230.0057
PRO 240.0059
VAL 250.0050
ARG 260.0112
SER 270.0109
GLU 280.0120
PHE 290.0122
GLU 300.0113
LEU 310.0115
ASP 320.0108
ARG 330.0104
ILE 340.0110
CYS 350.0110
GLY 360.0086
TYR 370.0097
GLY 380.0111
THR 390.0115
ALA 400.0101
ARG 410.0078
CYS 420.0056
ARG 430.0013
LYS 440.0054
LYS 450.0078
CYS 460.0084
ARG 470.0087
SER 480.0108
GLN 490.0096
GLU 500.0089
TYR 510.0121
ARG 520.0099
ILE 530.0124
GLY 540.0111
ARG 550.0091
CYS 560.0104
PRO 570.0141
ASN 580.0121
THR 590.0089
TYR 600.0053
ALA 610.0045
CYS 620.0066
CYS 630.0056
LEU 640.0080
ARG 650.0080
LYS 660.0111
TRP 670.0112
ASP 680.0096
GLU 690.0071
SER 700.0078
LEU 710.0117
LEU 720.0123
ASN 730.0092
ARG 740.0093
THR 750.0124
LYS 760.0150
PRO 770.0183
GLU 780.0144
ALA 790.0210
ALA 800.0259
ALA 810.0400
LYS 820.0374
LYS 830.0304
GLU 840.0248
MET 850.0209
ASN 860.0131
LEU 870.0107
SER 880.0077
VAL 890.0060
GLY 900.0065
LEU 910.0097
GLY 920.0193
GLY 930.0274
GLY 940.0246
SER 950.0166
ASN 960.0035
LEU 970.0023
SER 980.0067
VAL 990.0091
GLY 1000.0146
LEU 1010.0194
GLY 1020.0189
GLU 1030.0198
ILE 1040.0155
GLY 1050.0254
GLY 1060.0292
GLY 1070.0268
SER 1080.0259
LYS 1090.0200
LEU 1100.0194
LEU 1110.0186
ASP 1120.0188
ILE 1130.0163
ASN 1140.0174
LEU 1150.0155
GLY 1160.0177
ARG 1170.0207
GLY 1180.0146
GLY 1190.0138
GLY 1200.0076
SER 1210.0058
MET 1220.0068
VAL 1230.0043
ASP 1240.0072
LEU 1250.0071
THR 1260.0118
PHE 1270.0147
GLY 1280.0212
GLY 1290.0243
VAL 1300.0271
GLY 1310.0328
GLY 1320.0201
GLY 1330.0039
SER 1340.0118
THR 1350.0127
PHE 1360.0116
THR 1370.0134
PHE 1380.0093
PHE 1390.0118
PRO 1400.0081
LEU 1410.0120
VAL 1420.0153
ILE 1430.0178
GLY 1440.0237
GLY 1450.0276
GLY 1460.0231
SER 1470.0166
ASP 1480.0118
ALA 1490.0125
MET 1500.0118
TYR 1510.0101
LEU 1520.0108
GLY 1530.0153
PHE 1540.0165
ALA 1550.0210
ALA 1560.0335
GLY 1570.0350
GLY 1580.0326
GLY 1590.0251
SER 1600.0183
ALA 1610.0165
GLY 1620.0156
GLY 1630.0166
GLU 1640.0133
ASN 1650.0058
HIS 1660.0059
VAL 1670.0019
ALA 1680.0041
PHE 1690.0045
GLY 1700.0085
PRO 1710.0365
GLY 1720.0376
PRO 1730.0366
GLY 1740.0204
VAL 1750.0086
ASP 1760.0036
LEU 1770.0039
THR 1780.0051
PHE 1790.0059
GLY 1800.0074
GLY 1810.0101
VAL 1820.0074
GLN 1830.0084
PHE 1840.0080
ALA 1850.0108
MET 1860.0191
VAL 1870.0229
ASN 1880.0194
ASN 1890.0323
GLY 1900.0285
PRO 1910.0602
GLY 1920.0459
PRO 1930.0230
GLY 1940.0275
GLU 1950.0441
SER 1960.0602
PHE 1970.0476
THR 1980.0249
ALA 1990.0133
GLN 2000.0218
PRO 2010.0181
ALA 2020.0201
ASP 2030.0220
MET 2040.0296
GLN 2050.0343
ALA 2060.0319
GLY 2070.0239
ILE 2080.0121
LYS 2090.0127
GLY 2100.0234
PRO 2110.0185
GLY 2120.0133
PRO 2130.0104
GLY 2140.0178
GLY 2150.0226
SER 2160.0224
ILE 2170.0159
GLN 2180.0164
VAL 2190.0126
ILE 2200.0202
ASN 2210.0269
GLY 2220.0194
SER 2230.0150
THR 2240.0169
ILE 2250.0203
GLY 2260.0155
THR 2270.0179
GLY 2280.0261
SER 2290.0379
LYS 2300.0233
LYS 2310.0198
THR 2320.0139
ILE 2330.0189
LEU 2340.0186
ILE 2350.0220
TYR 2360.0180
SER 2370.0164
ILE 2380.0149
ILE 2390.0170
GLY 2400.0152
VAL 2410.0088
LYS 2420.0078
LYS 2430.0093
GLY 2440.0089
THR 2450.0066
LEU 2460.0104
ALA 2470.0154
TRP 2480.0198
ALA 2490.0239
ARG 2500.0276
THR 2510.0268
GLY 2520.0187
PHE 2530.0124
SER 2540.0048
PRO 2550.0101
ALA 2560.0053
LYS 2570.0076
LYS 2580.0125
LEU 2590.0175
ASN 2600.0228
ALA 2610.0346
GLY 2620.0224
VAL 2630.0212
VAL 2640.0250
ARG 2650.0156
VAL 2660.0154
PHE 2670.0134
PHE 2680.0095
LEU 2690.0134
ASN 2700.0160
GLN 2710.0134
LYS 2720.0130
LYS 2730.0149
ALA 2740.0143
LYS 2750.0118
ASP 2760.0124
VAL 2770.0110
LEU 2780.0083
ARG 2790.0056
LYS 2800.0077
THR 2810.0081
SER 2820.0077
ARG 2830.0077
PRO 2840.0075
MET 2850.0073
VAL 2860.0032
ASP 2870.0035
LEU 2880.0049
THR 2890.0063
PHE 2900.0043
GLY 2910.0048
GLY 2920.0033

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.