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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 7  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0891
GLU 270.0067
PRO 280.0066
CYS 290.0057
VAL 300.0052
GLU 310.0049
VAL 320.0041
VAL 330.0040
PRO 340.0049
ASN 350.0051
ILE 360.0043
THR 370.0040
TYR 380.0045
GLN 390.0045
CYS 400.0052
MET 410.0050
GLU 420.0057
LEU 430.0062
ASN 440.0066
PHE 450.0064
TYR 460.0067
LYS 470.0065
ILE 480.0059
PRO 490.0063
ASP 500.0067
ASN 510.0069
LEU 520.0061
PRO 530.0060
PHE 540.0059
SER 550.0053
THR 560.0047
LYS 570.0040
ASN 580.0036
LEU 590.0041
ASP 600.0040
LEU 610.0046
SER 620.0044
PHE 630.0051
ASN 640.0056
PRO 650.0060
LEU 660.0057
ARG 670.0056
HIS 680.0056
LEU 690.0052
GLY 700.0057
SER 710.0056
TYR 720.0057
SER 730.0056
PHE 740.0053
PHE 750.0058
SER 760.0060
PHE 770.0053
PRO 780.0053
GLU 790.0047
LEU 800.0041
GLN 810.0033
VAL 820.0029
LEU 830.0034
ASP 840.0034
LEU 850.0039
SER 860.0038
ARG 870.0045
CYS 880.0049
GLU 890.0051
ILE 900.0048
GLN 910.0049
THR 920.0048
ILE 930.0044
GLU 940.0048
ASP 950.0047
GLY 960.0048
ALA 970.0048
TYR 980.0044
GLN 990.0048
SER 1000.0051
LEU 1010.0044
SER 1020.0043
HIS 1030.0039
LEU 1040.0033
SER 1050.0026
THR 1060.0022
LEU 1070.0026
ILE 1080.0026
LEU 1090.0031
THR 1100.0031
GLY 1110.0039
ASN 1120.0041
PRO 1130.0044
ILE 1140.0040
GLN 1150.0043
SER 1160.0042
LEU 1170.0036
ALA 1180.0038
LEU 1190.0034
GLY 1200.0039
ALA 1210.0038
PHE 1220.0033
SER 1230.0038
GLY 1240.0042
LEU 1250.0035
SER 1260.0036
SER 1270.0032
LEU 1280.0025
GLN 1290.0018
LYS 1300.0014
LEU 1310.0017
VAL 1320.0018
ALA 1330.0023
VAL 1340.0025
GLU 1350.0033
THR 1360.0033
ASN 1370.0035
LEU 1380.0027
ALA 1390.0027
SER 1400.0018
LEU 1410.0012
GLU 1420.0012
ASN 1430.0020
PHE 1440.0020
PRO 1450.0023
ILE 1460.0020
GLY 1470.0020
HIS 1480.0028
LEU 1490.0025
LYS 1500.0026
THR 1510.0025
LEU 1520.0017
LYS 1530.0012
GLU 1540.0005
LEU 1550.0007
ASN 1560.0012
VAL 1570.0017
ALA 1580.0022
HIS 1590.0030
ASN 1600.0029
LEU 1610.0031
ILE 1620.0023
GLN 1630.0026
SER 1640.0019
PHE 1650.0017
LYS 1660.0011
LEU 1670.0006
PRO 1680.0005
GLU 1690.0012
TYR 1700.0015
PHE 1710.0012
SER 1720.0020
ASN 1730.0023
LEU 1740.0018
THR 1750.0024
ASN 1760.0021
LEU 1770.0013
GLU 1780.0013
HIS 1790.0008
LEU 1800.0007
ASP 1810.0013
LEU 1820.0017
SER 1830.0025
SER 1840.0031
ASN 1850.0029
LYS 1860.0033
ILE 1870.0029
GLN 1880.0035
SER 1890.0032
ILE 1900.0028
TYR 1910.0027
CYS 1920.0028
THR 1930.0020
ASP 1940.0016
LEU 1950.0019
ARG 1960.0020
VAL 1970.0017
LEU 1980.0021
HIS 1990.0028
GLN 2000.0027
MET 2010.0028
PRO 2020.0033
LEU 2030.0033
LEU 2040.0025
ASN 2050.0023
LEU 2060.0018
SER 2070.0017
LEU 2080.0018
ASP 2090.0020
LEU 2100.0025
SER 2110.0031
LEU 2120.0037
ASN 2130.0034
PRO 2140.0041
MET 2150.0039
ASN 2160.0044
PHE 2170.0042
ILE 2180.0038
GLN 2190.0038
PRO 2200.0043
GLY 2210.0041
ALA 2220.0033
PHE 2230.0034
LYS 2240.0041
GLU 2250.0041
ILE 2260.0034
ARG 2270.0034
LEU 2280.0028
HIS 2290.0028
LYS 2300.0026
LEU 2310.0028
THR 2320.0029
LEU 2330.0035
ARG 2340.0038
ASN 2350.0044
ASN 2360.0042
PHE 2370.0049
ASP 2380.0055
SER 2390.0060
LEU 2400.0062
ASN 2410.0062
VAL 2420.0054
MET 2430.0053
LYS 2440.0057
THR 2450.0053
CYS 2460.0045
ILE 2470.0048
GLN 2480.0051
GLY 2490.0044
LEU 2500.0041
ALA 2510.0047
GLY 2520.0047
LEU 2530.0041
GLU 2540.0042
VAL 2550.0037
HIS 2560.0037
ARG 2570.0035
LEU 2580.0037
VAL 2590.0037
LEU 2600.0042
GLY 2610.0046
GLU 2620.0047
PHE 2630.0047
ARG 2640.0053
ASN 2650.0053
GLU 2660.0052
GLY 2670.0057
ASN 2680.0059
LEU 2690.0061
GLU 2700.0069
LYS 2710.0071
PHE 2720.0067
ASP 2730.0073
LYS 2740.0074
SER 2750.0071
ALA 2760.0064
LEU 2770.0060
GLU 2780.0064
GLY 2790.0058
LEU 2800.0055
CYS 2810.0060
ASN 2820.0056
LEU 2830.0050
THR 2840.0050
ILE 2850.0047
GLU 2860.0046
GLU 2870.0043
PHE 2880.0045
ARG 2890.0043
LEU 2900.0047
ALA 2910.0044
TYR 2920.0050
LEU 2930.0056
ASP 2940.0062
TYR 2950.0068
TYR 2960.0072
LEU 2970.0073
ASP 2980.0080
GLY 2990.0078
ILE 3000.0073
ILE 3010.0079
ASP 3020.0076
LEU 3030.0070
PHE 3040.0065
ASN 3050.0070
CYS 3060.0064
LEU 3070.0060
THR 3080.0066
ASN 3090.0063
VAL 3100.0055
SER 3110.0053
SER 3120.0048
PHE 3130.0050
SER 3140.0047
LEU 3150.0051
VAL 3160.0047
SER 3170.0052
VAL 3180.0058
THR 3190.0066
ILE 3200.0070
GLU 3210.0078
ARG 3220.0081
VAL 3230.0076
LYS 3240.0082
ASP 3250.0079
PHE 3260.0074
SER 3270.0080
TYR 3280.0080
ASN 3290.0077
PHE 3300.0070
GLY 3310.0067
TRP 3320.0060
GLN 3330.0057
HIS 3340.0051
LEU 3350.0053
GLU 3360.0049
LEU 3370.0052
VAL 3380.0048
ASN 3390.0051
CYS 3400.0057
LYS 3410.0064
PHE 3420.0069
GLY 3430.0077
GLN 3440.0077
PHE 3450.0072
PRO 3460.0072
THR 3470.0077
LEU 3480.0073
LYS 3490.0076
LEU 3500.0072
LYS 3510.0074
SER 3520.0068
LEU 3530.0062
LYS 3540.0058
ARG 3550.0052
LEU 3560.0054
THR 3570.0049
PHE 3580.0052
THR 3590.0048
SER 3600.0049
ASN 3610.0056
LYS 3620.0061
GLY 3630.0068
GLY 3640.0073
ASN 3650.0069
ALA 3660.0073
PHE 3670.0071
SER 3680.0076
GLU 3690.0077
VAL 3700.0074
ASP 3710.0076
LEU 3720.0071
PRO 3730.0073
SER 3740.0067
LEU 3750.0062
GLU 3760.0057
PHE 3770.0051
LEU 3780.0053
ASP 3790.0048
LEU 3800.0053
SER 3810.0048
ARG 3820.0049
ASN 3830.0055
GLY 3840.0058
LEU 3850.0062
SER 3860.0067
PHE 3870.0068
LYS 3880.0073
GLY 3890.0074
CYS 3900.0068
CYS 3910.0066
SER 3920.0072
GLN 3930.0073
SER 3940.0078
ASP 3950.0074
PHE 3960.0070
GLY 3970.0075
THR 3980.0070
ILE 3990.0071
SER 4000.0065
LEU 4010.0060
LYS 4020.0053
TYR 4030.0049
LEU 4040.0051
ASP 4050.0048
LEU 4060.0052
SER 4070.0047
PHE 4080.0048
ASN 4090.0055
GLY 4100.0060
VAL 4110.0063
ILE 4120.0063
THR 4130.0068
MET 4140.0067
SER 4150.0072
SER 4160.0071
ASN 4170.0068
PHE 4180.0066
LEU 4190.0072
GLY 4200.0072
LEU 4210.0065
GLU 4220.0063
GLN 4230.0060
LEU 4240.0055
GLU 4250.0049
HIS 4260.0045
LEU 4270.0047
ASP 4280.0044
PHE 4290.0048
GLN 4300.0043
HIS 4310.0047
SER 4320.0052
ASN 4330.0056
LEU 4340.0057
LYS 4350.0063
GLN 4360.0066
MET 4370.0060
SER 4380.0061
GLU 4390.0068
PHE 4400.0067
SER 4410.0063
VAL 4420.0062
PHE 4430.0058
LEU 4440.0062
SER 4450.0064
LEU 4460.0058
ARG 4470.0058
ASN 4480.0055
LEU 4490.0050
ILE 4500.0044
TYR 4510.0041
LEU 4520.0043
ASP 4530.0040
ILE 4540.0044
SER 4550.0041
HIS 4560.0044
THR 4570.0049
HIS 4580.0051
THR 4590.0052
ARG 4600.0053
VAL 4610.0052
ALA 4620.0056
PHE 4630.0058
ASN 4640.0055
GLY 4650.0058
ILE 4660.0056
PHE 4670.0052
ASN 4680.0057
GLY 4690.0058
LEU 4700.0052
SER 4710.0052
SER 4720.0049
LEU 4730.0045
GLU 4740.0039
VAL 4750.0036
LEU 4760.0038
LYS 4770.0036
MET 4780.0039
ALA 4790.0036
GLY 4800.0040
ASN 4810.0045
SER 4820.0047
PHE 4830.0047
GLN 4840.0052
GLU 4850.0050
ASN 4860.0045
PHE 4870.0043
LEU 4880.0042
PRO 4890.0045
ASP 4900.0045
ILE 4910.0048
PHE 4920.0044
THR 4930.0047
GLU 4940.0050
LEU 4950.0046
ARG 4960.0044
ASN 4970.0042
LEU 4980.0038
THR 4990.0032
PHE 5000.0030
LEU 5010.0032
ASP 5020.0031
LEU 5030.0034
SER 5040.0032
GLN 5050.0036
CYS 5060.0039
GLN 5070.0039
LEU 5080.0038
GLU 5090.0037
GLN 5100.0037
LEU 5110.0036
SER 5120.0039
PRO 5130.0036
THR 5140.0040
ALA 5150.0040
PHE 5160.0036
ASN 5170.0038
SER 5180.0042
LEU 5190.0038
SER 5200.0037
SER 5210.0035
LEU 5220.0031
GLN 5230.0026
VAL 5240.0024
LEU 5250.0026
ASN 5260.0026
MET 5270.0028
SER 5280.0026
HIS 5290.0031
ASN 5300.0033
ASN 5310.0035
PHE 5320.0031
PHE 5330.0029
SER 5340.0025
LEU 5350.0022
ASP 5360.0025
THR 5370.0023
PHE 5380.0028
PRO 5390.0031
TYR 5400.0027
LYS 5410.0028
CYS 5420.0033
LEU 5430.0030
ASN 5440.0031
SER 5450.0029
LEU 5460.0025
GLN 5470.0020
VAL 5480.0018
LEU 5490.0020
ASP 5500.0020
TYR 5510.0022
SER 5520.0022
LEU 5530.0026
ASN 5540.0028
HIS 5550.0029
ILE 5560.0024
MET 5570.0024
THR 5580.0021
SER 5590.0020
LYS 5600.0024
LYS 5610.0024
GLN 5620.0019
GLU 5630.0021
LEU 5640.0017
GLN 5650.0018
HIS 5660.0022
PHE 5670.0020
PRO 5680.0023
SER 5690.0022
SER 5700.0022
LEU 5710.0018
ALA 5720.0014
PHE 5730.0012
LEU 5740.0013
ASN 5750.0015
LEU 5760.0016
THR 5770.0018
GLN 5780.0023
ASN 5790.0023
ASP 5800.0026
PHE 5810.0022
ALA 5820.0023
CYS 5830.0020
THR 5840.0021
CYS 5850.0017
GLU 5860.0018
HIS 5870.0017
GLN 5880.0013
SER 5890.0011
PHE 5900.0013
LEU 5910.0012
GLN 5920.0007
TRP 5930.0008
ILE 5940.0009
LYS 5950.0006
ASP 5960.0006
GLN 5970.0007
ARG 5980.0006
GLN 5990.0007
LEU 6000.0009
LEU 6010.0008
VAL 6020.0009
GLU 6030.0011
VAL 6040.0012
GLU 6050.0016
ARG 6060.0018
MET 6070.0017
GLU 6080.0021
CYS 6090.0022
ALA 6100.0027
THR 6110.0029
PRO 6120.0028
SER 6130.0033
ASP 6140.0031
LYS 6150.0026
GLN 6160.0028
GLY 6170.0026
MET 6180.0023
PRO 6190.0018
VAL 6200.0015
LEU 6210.0012
SER 6220.0016
LEU 6230.0016
ASN 6240.0016
ILE 6250.0012
THR 6260.0014
CYS 6270.0015
GLU 10.0175
ALA 20.0172
ALA 30.0170
ALA 40.0161
LYS 50.0154
MET 60.0153
GLN 70.0148
ARG 80.0139
LEU 90.0134
VAL 100.0133
LEU 110.0126
LEU 120.0118
LEU 130.0116
ALA 140.0113
ILE 150.0105
SER 160.0099
LEU 170.0099
LEU 180.0096
LEU 190.0088
TYR 200.0085
GLN 210.0085
ASP 220.0080
LEU 230.0074
PRO 240.0069
VAL 250.0071
ARG 260.0065
SER 270.0059
GLU 280.0055
PHE 290.0051
GLU 300.0049
LEU 310.0046
ASP 320.0043
ARG 330.0037
ILE 340.0034
CYS 350.0029
GLY 360.0025
TYR 370.0031
GLY 380.0032
THR 390.0024
ALA 400.0021
ARG 410.0025
CYS 420.0030
ARG 430.0029
LYS 440.0034
LYS 450.0028
CYS 460.0020
ARG 470.0016
SER 480.0015
GLN 490.0007
GLU 500.0008
TYR 510.0009
ARG 520.0015
ILE 530.0013
GLY 540.0021
ARG 550.0029
CYS 560.0034
PRO 570.0042
ASN 580.0044
THR 590.0040
TYR 600.0035
ALA 610.0027
CYS 620.0023
CYS 630.0017
LEU 640.0012
ARG 650.0008
LYS 660.0006
TRP 670.0013
ASP 680.0014
GLU 690.0021
SER 700.0022
LEU 710.0026
LEU 720.0030
ASN 730.0032
ARG 740.0034
THR 750.0039
LYS 760.0042
PRO 770.0048
GLU 780.0050
ALA 790.0056
ALA 800.0057
ALA 810.0032
LYS 820.0038
LYS 830.0026
GLU 840.0025
MET 850.0035
ASN 860.0070
LEU 870.0084
SER 880.0127
VAL 890.0145
GLY 900.0189
LEU 910.0211
GLY 920.0254
GLY 930.0285
GLY 940.0266
SER 950.0235
ASN 960.0192
LEU 970.0161
SER 980.0129
VAL 990.0094
GLY 1000.0074
LEU 1010.0045
GLY 1020.0063
GLU 1030.0069
ILE 1040.0098
GLY 1050.0120
GLY 1060.0122
GLY 1070.0104
SER 1080.0080
LYS 1090.0056
LEU 1100.0044
LEU 1110.0035
ASP 1120.0070
ILE 1130.0097
ASN 1140.0131
LEU 1150.0155
GLY 1160.0200
ARG 1170.0222
GLY 1180.0250
GLY 1190.0248
GLY 1200.0254
SER 1210.0223
MET 1220.0213
VAL 1230.0172
ASP 1240.0172
LEU 1250.0132
THR 1260.0135
PHE 1270.0111
GLY 1280.0110
GLY 1290.0134
VAL 1300.0122
GLY 1310.0157
GLY 1320.0168
GLY 1330.0194
SER 1340.0166
THR 1350.0182
PHE 1360.0148
THR 1370.0161
PHE 1380.0143
PHE 1390.0145
PRO 1400.0140
LEU 1410.0104
VAL 1420.0117
ILE 1430.0095
GLY 1440.0101
GLY 1450.0126
GLY 1460.0125
SER 1470.0114
ASP 1480.0127
ALA 1490.0087
MET 1500.0080
TYR 1510.0046
LEU 1520.0057
GLY 1530.0073
PHE 1540.0096
ALA 1550.0136
ALA 1560.0157
GLY 1570.0199
GLY 1580.0230
GLY 1590.0248
SER 1600.0253
ALA 1610.0246
GLY 1620.0229
GLY 1630.0219
GLU 1640.0190
ASN 1650.0186
HIS 1660.0185
VAL 1670.0178
ALA 1680.0204
PHE 1690.0199
GLY 1700.0241
PRO 1710.0256
GLY 1720.0269
PRO 1730.0251
GLY 1740.0248
VAL 1750.0218
ASP 1760.0237
LEU 1770.0221
THR 1780.0240
PHE 1790.0239
GLY 1800.0263
GLY 1810.0293
VAL 1820.0301
GLN 1830.0290
PHE 1840.0274
ALA 1850.0282
MET 1860.0253
VAL 1870.0289
ASN 1880.0277
ASN 1890.0292
GLY 1900.0281
PRO 1910.0357
GLY 1920.0462
PRO 1930.0489
GLY 1940.0502
GLU 1950.0446
SER 1960.0374
PHE 1970.0384
THR 1980.0349
ALA 1990.0352
GLN 2000.0428
PRO 2010.0457
ALA 2020.0571
ASP 2030.0616
MET 2040.0616
GLN 2050.0734
ALA 2060.0809
GLY 2070.0891
ILE 2080.0773
LYS 2090.0858
GLY 2100.0778
PRO 2110.0712
GLY 2120.0776
PRO 2130.0682
GLY 2140.0582
GLY 2150.0553
SER 2160.0445
ILE 2170.0370
GLN 2180.0318
VAL 2190.0236
ILE 2200.0187
ASN 2210.0135
GLY 2220.0102
SER 2230.0076
THR 2240.0042
ILE 2250.0035
GLY 2260.0033
THR 2270.0028
GLY 2280.0030
SER 2290.0037
LYS 2300.0043
LYS 2310.0047
THR 2320.0052
ILE 2330.0050
LEU 2340.0054
ILE 2350.0055
TYR 2360.0057
SER 2370.0052
ILE 2380.0052
ILE 2390.0047
GLY 2400.0048
VAL 2410.0058
LYS 2420.0058
LYS 2430.0064
GLY 2440.0068
THR 2450.0064
LEU 2460.0061
ALA 2470.0055
TRP 2480.0055
ALA 2490.0049
ARG 2500.0050
THR 2510.0048
GLY 2520.0049
PHE 2530.0049
SER 2540.0051
PRO 2550.0049
ALA 2560.0051
LYS 2570.0051
LYS 2580.0045
LEU 2590.0048
ASN 2600.0048
ALA 2610.0054
GLY 2620.0047
VAL 2630.0050
VAL 2640.0042
ARG 2650.0048
VAL 2660.0052
PHE 2670.0048
PHE 2680.0046
LEU 2690.0041
ASN 2700.0040
GLN 2710.0038
LYS 2720.0034
LYS 2730.0031
ALA 2740.0032
LYS 2750.0029
ASP 2760.0025
VAL 2770.0026
LEU 2780.0026
ARG 2790.0021
LYS 2800.0020
THR 2810.0023
SER 2820.0021
ARG 2830.0024
PRO 2840.0025
MET 2850.0024
VAL 2860.0026
ASP 2870.0027
LEU 2880.0022
THR 2890.0027
PHE 2900.0027
GLY 2910.0033
GLY 2920.0032

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.