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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 70  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1062
GLU 270.0059
PRO 280.0042
CYS 290.0027
VAL 300.0043
GLU 310.0065
VAL 320.0083
VAL 330.0097
PRO 340.0095
ASN 350.0077
ILE 360.0073
THR 370.0061
TYR 380.0037
GLN 390.0029
CYS 400.0011
MET 410.0032
GLU 420.0042
LEU 430.0036
ASN 440.0050
PHE 450.0042
TYR 460.0054
LYS 470.0054
ILE 480.0035
PRO 490.0026
ASP 500.0038
ASN 510.0044
LEU 520.0034
PRO 530.0042
PHE 540.0031
SER 550.0043
THR 560.0036
LYS 570.0044
ASN 580.0043
LEU 590.0029
ASP 600.0033
LEU 610.0033
SER 620.0044
PHE 630.0052
ASN 640.0047
PRO 650.0056
LEU 660.0048
ARG 670.0047
HIS 680.0043
LEU 690.0038
GLY 700.0035
SER 710.0031
TYR 720.0029
SER 730.0031
PHE 740.0022
PHE 750.0016
SER 760.0013
PHE 770.0010
PRO 780.0014
GLU 790.0024
LEU 800.0025
GLN 810.0037
VAL 820.0039
LEU 830.0037
ASP 840.0039
LEU 850.0041
SER 860.0046
ARG 870.0047
CYS 880.0043
GLU 890.0047
ILE 900.0043
GLN 910.0045
THR 920.0040
ILE 930.0038
GLU 940.0035
ASP 950.0032
GLY 960.0031
ALA 970.0035
TYR 980.0032
GLN 990.0031
SER 1000.0026
LEU 1010.0029
SER 1020.0032
HIS 1030.0032
LEU 1040.0032
SER 1050.0032
THR 1060.0033
LEU 1070.0035
ILE 1080.0036
LEU 1090.0036
THR 1100.0038
GLY 1110.0039
ASN 1120.0039
PRO 1130.0038
ILE 1140.0037
GLN 1150.0036
SER 1160.0034
LEU 1170.0029
ALA 1180.0028
LEU 1190.0026
GLY 1200.0030
ALA 1210.0032
PHE 1220.0031
SER 1230.0032
GLY 1240.0032
LEU 1250.0031
SER 1260.0032
SER 1270.0025
LEU 1280.0023
GLN 1290.0022
LYS 1300.0023
LEU 1310.0020
VAL 1320.0027
ALA 1330.0025
VAL 1340.0027
GLU 1350.0026
THR 1360.0025
ASN 1370.0017
LEU 1380.0012
ALA 1390.0007
SER 1400.0010
LEU 1410.0012
GLU 1420.0009
ASN 1430.0010
PHE 1440.0014
PRO 1450.0017
ILE 1460.0021
GLY 1470.0014
HIS 1480.0018
LEU 1490.0020
LYS 1500.0021
THR 1510.0023
LEU 1520.0017
LYS 1530.0023
GLU 1540.0023
LEU 1550.0017
ASN 1560.0018
VAL 1570.0017
ALA 1580.0019
HIS 1590.0015
ASN 1600.0009
LEU 1610.0008
ILE 1620.0019
GLN 1630.0025
SER 1640.0026
PHE 1650.0029
LYS 1660.0026
LEU 1670.0023
PRO 1680.0018
GLU 1690.0019
TYR 1700.0017
PHE 1710.0023
SER 1720.0020
ASN 1730.0020
LEU 1740.0021
THR 1750.0026
ASN 1760.0028
LEU 1770.0022
GLU 1780.0025
HIS 1790.0024
LEU 1800.0021
ASP 1810.0021
LEU 1820.0025
SER 1830.0026
SER 1840.0024
ASN 1850.0023
LYS 1860.0026
ILE 1870.0032
GLN 1880.0034
SER 1890.0035
ILE 1900.0035
TYR 1910.0036
CYS 1920.0036
THR 1930.0035
ASP 1940.0033
LEU 1950.0034
ARG 1960.0034
VAL 1970.0031
LEU 1980.0033
HIS 1990.0037
GLN 2000.0036
MET 2010.0037
PRO 2020.0039
LEU 2030.0039
LEU 2040.0034
ASN 2050.0032
LEU 2060.0027
SER 2070.0029
LEU 2080.0030
ASP 2090.0030
LEU 2100.0031
SER 2110.0032
LEU 2120.0035
ASN 2130.0034
PRO 2140.0036
MET 2150.0035
ASN 2160.0037
PHE 2170.0035
ILE 2180.0034
GLN 2190.0031
PRO 2200.0029
GLY 2210.0028
ALA 2220.0028
PHE 2230.0029
LYS 2240.0027
GLU 2250.0026
ILE 2260.0028
ARG 2270.0023
LEU 2280.0025
HIS 2290.0026
LYS 2300.0026
LEU 2310.0025
THR 2320.0032
LEU 2330.0031
ARG 2340.0034
ASN 2350.0036
ASN 2360.0033
PHE 2370.0034
ASP 2380.0035
SER 2390.0030
LEU 2400.0026
ASN 2410.0025
VAL 2420.0030
MET 2430.0030
LYS 2440.0024
THR 2450.0026
CYS 2460.0031
ILE 2470.0027
GLN 2480.0021
GLY 2490.0024
LEU 2500.0027
ALA 2510.0022
GLY 2520.0021
LEU 2530.0022
GLU 2540.0024
VAL 2550.0026
HIS 2560.0028
ARG 2570.0033
LEU 2580.0029
VAL 2590.0031
LEU 2600.0028
GLY 2610.0029
GLU 2620.0034
PHE 2630.0040
ARG 2640.0043
ASN 2650.0047
GLU 2660.0043
GLY 2670.0039
ASN 2680.0034
LEU 2690.0029
GLU 2700.0026
LYS 2710.0022
PHE 2720.0019
ASP 2730.0016
LYS 2740.0021
SER 2750.0021
ALA 2760.0022
LEU 2770.0025
GLU 2780.0023
GLY 2790.0023
LEU 2800.0029
CYS 2810.0030
ASN 2820.0023
LEU 2830.0025
THR 2840.0028
ILE 2850.0032
GLU 2860.0035
GLU 2870.0039
PHE 2880.0035
ARG 2890.0035
LEU 2900.0031
ALA 2910.0033
TYR 2920.0032
LEU 2930.0026
ASP 2940.0026
TYR 2950.0021
TYR 2960.0020
LEU 2970.0017
ASP 2980.0018
GLY 2990.0021
ILE 3000.0025
ILE 3010.0031
ASP 3020.0031
LEU 3030.0028
PHE 3040.0033
ASN 3050.0038
CYS 3060.0041
LEU 3070.0038
THR 3080.0040
ASN 3090.0047
VAL 3100.0046
SER 3110.0050
SER 3120.0048
PHE 3130.0041
SER 3140.0038
LEU 3150.0032
VAL 3160.0034
SER 3170.0031
VAL 3180.0023
THR 3190.0018
ILE 3200.0015
GLU 3210.0015
ARG 3220.0019
VAL 3230.0016
LYS 3240.0024
ASP 3250.0029
PHE 3260.0026
SER 3270.0029
TYR 3280.0037
ASN 3290.0042
PHE 3300.0044
GLY 3310.0051
TRP 3320.0043
GLN 3330.0046
HIS 3340.0043
LEU 3350.0037
GLU 3360.0036
LEU 3370.0030
VAL 3380.0035
ASN 3390.0034
CYS 3400.0023
LYS 3410.0019
PHE 3420.0011
GLY 3430.0018
GLN 3440.0017
PHE 3450.0010
PRO 3460.0009
THR 3470.0015
LEU 3480.0020
LYS 3490.0028
LEU 3500.0035
LYS 3510.0042
SER 3520.0042
LEU 3530.0036
LYS 3540.0040
ARG 3550.0038
LEU 3560.0030
THR 3570.0033
PHE 3580.0025
THR 3590.0035
SER 3600.0040
ASN 3610.0029
LYS 3620.0036
GLY 3630.0030
GLY 3640.0028
ASN 3650.0026
ALA 3660.0025
PHE 3670.0014
SER 3680.0011
GLU 3690.0011
VAL 3700.0011
ASP 3710.0021
LEU 3720.0022
PRO 3730.0027
SER 3740.0033
LEU 3750.0028
GLU 3760.0033
PHE 3770.0033
LEU 3780.0024
ASP 3790.0027
LEU 3800.0022
SER 3810.0033
ARG 3820.0044
ASN 3830.0039
GLY 3840.0043
LEU 3850.0032
SER 3860.0035
PHE 3870.0030
LYS 3880.0032
GLY 3890.0027
CYS 3900.0021
CYS 3910.0015
SER 3920.0007
GLN 3930.0008
SER 3940.0010
ASP 3950.0007
PHE 3960.0009
GLY 3970.0012
THR 3980.0016
ILE 3990.0020
SER 4000.0026
LEU 4010.0023
LYS 4020.0025
TYR 4030.0025
LEU 4040.0020
ASP 4050.0024
LEU 4060.0023
SER 4070.0029
PHE 4080.0039
ASN 4090.0037
GLY 4100.0041
VAL 4110.0040
ILE 4120.0030
THR 4130.0030
MET 4140.0025
SER 4150.0026
SER 4160.0022
ASN 4170.0016
PHE 4180.0015
LEU 4190.0013
GLY 4200.0012
LEU 4210.0014
GLU 4220.0017
GLN 4230.0019
LEU 4240.0019
GLU 4250.0022
HIS 4260.0023
LEU 4270.0018
ASP 4280.0020
PHE 4290.0021
GLN 4300.0024
HIS 4310.0026
SER 4320.0029
ASN 4330.0030
LEU 4340.0026
LYS 4350.0027
GLN 4360.0026
MET 4370.0021
SER 4380.0020
GLU 4390.0023
PHE 4400.0023
SER 4410.0020
VAL 4420.0019
PHE 4430.0017
LEU 4440.0016
SER 4450.0016
LEU 4460.0016
ARG 4470.0016
ASN 4480.0016
LEU 4490.0016
ILE 4500.0017
TYR 4510.0018
LEU 4520.0014
ASP 4530.0014
ILE 4540.0014
SER 4550.0014
HIS 4560.0015
THR 4570.0025
HIS 4580.0015
THR 4590.0014
ARG 4600.0008
VAL 4610.0014
ALA 4620.0015
PHE 4630.0018
ASN 4640.0017
GLY 4650.0020
ILE 4660.0018
PHE 4670.0016
ASN 4680.0017
GLY 4690.0018
LEU 4700.0016
SER 4710.0016
SER 4720.0015
LEU 4730.0013
GLU 4740.0012
VAL 4750.0011
LEU 4760.0012
LYS 4770.0007
MET 4780.0007
ALA 4790.0008
GLY 4800.0009
ASN 4810.0007
SER 4820.0003
PHE 4830.0007
GLN 4840.0012
GLU 4850.0015
ASN 4860.0011
PHE 4870.0012
LEU 4880.0010
PRO 4890.0013
ASP 4900.0013
ILE 4910.0012
PHE 4920.0012
THR 4930.0014
GLU 4940.0015
LEU 4950.0012
ARG 4960.0012
ASN 4970.0010
LEU 4980.0008
THR 4990.0005
PHE 5000.0004
LEU 5010.0004
ASP 5020.0004
LEU 5030.0004
SER 5040.0007
GLN 5050.0007
CYS 5060.0005
GLN 5070.0009
LEU 5080.0008
GLU 5090.0012
GLN 5100.0012
LEU 5110.0010
SER 5120.0011
PRO 5130.0010
THR 5140.0010
ALA 5150.0008
PHE 5160.0006
ASN 5170.0008
SER 5180.0008
LEU 5190.0006
SER 5200.0005
SER 5210.0004
LEU 5220.0002
GLN 5230.0002
VAL 5240.0004
LEU 5250.0005
ASN 5260.0007
MET 5270.0010
SER 5280.0012
HIS 5290.0013
ASN 5300.0013
ASN 5310.0014
PHE 5320.0014
PHE 5330.0014
SER 5340.0012
LEU 5350.0010
ASP 5360.0009
THR 5370.0007
PHE 5380.0006
PRO 5390.0007
TYR 5400.0006
LYS 5410.0005
CYS 5420.0005
LEU 5430.0004
ASN 5440.0003
SER 5450.0003
LEU 5460.0005
GLN 5470.0008
VAL 5480.0010
LEU 5490.0010
ASP 5500.0012
TYR 5510.0013
SER 5520.0016
LEU 5530.0017
ASN 5540.0017
HIS 5550.0016
ILE 5560.0014
MET 5570.0014
THR 5580.0011
SER 5590.0009
LYS 5600.0011
LYS 5610.0008
GLN 5620.0006
GLU 5630.0005
LEU 5640.0002
GLN 5650.0001
HIS 5660.0003
PHE 5670.0005
PRO 5680.0005
SER 5690.0005
SER 5700.0005
LEU 5710.0006
ALA 5720.0010
PHE 5730.0012
LEU 5740.0010
ASN 5750.0013
LEU 5760.0013
THR 5770.0016
GLN 5780.0017
ASN 5790.0015
ASP 5800.0015
PHE 5810.0012
ALA 5820.0015
CYS 5830.0011
THR 5840.0023
CYS 5850.0031
GLU 5860.0034
HIS 5870.0018
GLN 5880.0017
SER 5890.0015
PHE 5900.0008
LEU 5910.0007
GLN 5920.0010
TRP 5930.0006
ILE 5940.0005
LYS 5950.0011
ASP 5960.0012
GLN 5970.0007
ARG 5980.0010
GLN 5990.0013
LEU 6000.0011
LEU 6010.0011
VAL 6020.0014
GLU 6030.0014
VAL 6040.0010
GLU 6050.0012
ARG 6060.0013
MET 6070.0012
GLU 6080.0009
CYS 6090.0008
ALA 6100.0010
THR 6110.0014
PRO 6120.0018
SER 6130.0017
ASP 6140.0018
LYS 6150.0012
GLN 6160.0008
GLY 6170.0008
MET 6180.0009
PRO 6190.0010
VAL 6200.0007
LEU 6210.0011
SER 6220.0021
LEU 6230.0016
ASN 6240.0026
ILE 6250.0028
THR 6260.0039
CYS 6270.0061
GLU 10.0078
ALA 20.0070
ALA 30.0096
ALA 40.0072
LYS 50.0050
MET 60.0076
GLN 70.0071
ARG 80.0055
LEU 90.0075
VAL 100.0089
LEU 110.0066
LEU 120.0070
LEU 130.0063
ALA 140.0055
ILE 150.0060
SER 160.0045
LEU 170.0038
LEU 180.0027
LEU 190.0049
TYR 200.0071
GLN 210.0063
ASP 220.0040
LEU 230.0048
PRO 240.0054
VAL 250.0078
ARG 260.0057
SER 270.0050
GLU 280.0054
PHE 290.0050
GLU 300.0043
LEU 310.0042
ASP 320.0039
ARG 330.0037
ILE 340.0040
CYS 350.0041
GLY 360.0030
TYR 370.0031
GLY 380.0033
THR 390.0036
ALA 400.0034
ARG 410.0021
CYS 420.0014
ARG 430.0007
LYS 440.0016
LYS 450.0028
CYS 460.0026
ARG 470.0023
SER 480.0025
GLN 490.0021
GLU 500.0022
TYR 510.0032
ARG 520.0037
ILE 530.0046
GLY 540.0050
ARG 550.0047
CYS 560.0037
PRO 570.0041
ASN 580.0026
THR 590.0027
TYR 600.0020
ALA 610.0026
CYS 620.0029
CYS 630.0020
LEU 640.0022
ARG 650.0016
LYS 660.0028
TRP 670.0037
ASP 680.0031
GLU 690.0034
SER 700.0033
LEU 710.0039
LEU 720.0044
ASN 730.0036
ARG 740.0027
THR 750.0033
LYS 760.0023
PRO 770.0041
GLU 780.0047
ALA 790.0098
ALA 800.0109
ALA 810.0334
LYS 820.0279
LYS 830.0240
GLU 840.0180
MET 850.0142
ASN 860.0076
LEU 870.0073
SER 880.0073
VAL 890.0096
GLY 900.0116
LEU 910.0170
GLY 920.0331
GLY 930.0484
GLY 940.0455
SER 950.0314
ASN 960.0099
LEU 970.0078
SER 980.0023
VAL 990.0015
GLY 1000.0074
LEU 1010.0092
GLY 1020.0156
GLU 1030.0170
ILE 1040.0094
GLY 1050.0129
GLY 1060.0202
GLY 1070.0213
SER 1080.0249
LYS 1090.0211
LEU 1100.0248
LEU 1110.0259
ASP 1120.0272
ILE 1130.0222
ASN 1140.0255
LEU 1150.0217
GLY 1160.0231
ARG 1170.0306
GLY 1180.0225
GLY 1190.0171
GLY 1200.0072
SER 1210.0049
MET 1220.0044
VAL 1230.0054
ASP 1240.0055
LEU 1250.0063
THR 1260.0036
PHE 1270.0047
GLY 1280.0090
GLY 1290.0140
VAL 1300.0163
GLY 1310.0228
GLY 1320.0159
GLY 1330.0134
SER 1340.0064
THR 1350.0112
PHE 1360.0057
THR 1370.0057
PHE 1380.0051
PHE 1390.0060
PRO 1400.0066
LEU 1410.0127
VAL 1420.0154
ILE 1430.0186
GLY 1440.0227
GLY 1450.0258
GLY 1460.0270
SER 1470.0228
ASP 1480.0167
ALA 1490.0195
MET 1500.0174
TYR 1510.0110
LEU 1520.0081
GLY 1530.0088
PHE 1540.0066
ALA 1550.0083
ALA 1560.0112
GLY 1570.0157
GLY 1580.0134
GLY 1590.0215
SER 1600.0273
ALA 1610.0199
GLY 1620.0181
GLY 1630.0142
GLU 1640.0085
ASN 1650.0062
HIS 1660.0041
VAL 1670.0037
ALA 1680.0028
PHE 1690.0027
GLY 1700.0018
PRO 1710.0186
GLY 1720.0234
PRO 1730.0247
GLY 1740.0141
VAL 1750.0015
ASP 1760.0026
LEU 1770.0014
THR 1780.0021
PHE 1790.0018
GLY 1800.0020
GLY 1810.0077
VAL 1820.0071
GLN 1830.0064
PHE 1840.0058
ALA 1850.0065
MET 1860.0091
VAL 1870.0135
ASN 1880.0144
ASN 1890.0137
GLY 1900.0189
PRO 1910.0144
GLY 1920.0095
PRO 1930.0067
GLY 1940.0104
GLU 1950.0147
SER 1960.0035
PHE 1970.0109
THR 1980.0162
ALA 1990.0207
GLN 2000.0111
PRO 2010.0089
ALA 2020.0114
ASP 2030.0045
MET 2040.0164
GLN 2050.0232
ALA 2060.0254
GLY 2070.0248
ILE 2080.0119
LYS 2090.0088
GLY 2100.0181
PRO 2110.0208
GLY 2120.0626
PRO 2130.0301
GLY 2140.0660
GLY 2150.1062
SER 2160.0323
ILE 2170.0725
GLN 2180.0319
VAL 2190.0735
ILE 2200.0493
ASN 2210.0840
GLY 2220.0656
SER 2230.0387
THR 2240.0556
ILE 2250.0343
GLY 2260.0393
THR 2270.0221
GLY 2280.0266
SER 2290.0349
LYS 2300.0207
LYS 2310.0160
THR 2320.0079
ILE 2330.0100
LEU 2340.0057
ILE 2350.0062
TYR 2360.0053
SER 2370.0112
ILE 2380.0121
ILE 2390.0167
GLY 2400.0184
VAL 2410.0120
LYS 2420.0083
LYS 2430.0101
GLY 2440.0099
THR 2450.0061
LEU 2460.0078
ALA 2470.0169
TRP 2480.0250
ALA 2490.0359
ARG 2500.0422
THR 2510.0479
GLY 2520.0399
PHE 2530.0221
SER 2540.0150
PRO 2550.0134
ALA 2560.0164
LYS 2570.0200
LYS 2580.0161
LEU 2590.0227
ASN 2600.0285
ALA 2610.0376
GLY 2620.0241
VAL 2630.0153
VAL 2640.0116
ARG 2650.0100
VAL 2660.0080
PHE 2670.0077
PHE 2680.0046
LEU 2690.0055
ASN 2700.0020
GLN 2710.0025
LYS 2720.0019
LYS 2730.0026
ALA 2740.0025
LYS 2750.0014
ASP 2760.0015
VAL 2770.0016
LEU 2780.0016
ARG 2790.0015
LYS 2800.0015
THR 2810.0013
SER 2820.0021
ARG 2830.0022
PRO 2840.0029
MET 2850.0033
VAL 2860.0030
ASP 2870.0033
LEU 2880.0027
THR 2890.0029
PHE 2900.0019
GLY 2910.0028
GLY 2920.0022

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.