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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 71  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1127
GLU 270.0083
PRO 280.0094
CYS 290.0053
VAL 300.0086
GLU 310.0101
VAL 320.0174
VAL 330.0205
PRO 340.0182
ASN 350.0182
ILE 360.0187
THR 370.0142
TYR 380.0081
GLN 390.0103
CYS 400.0086
MET 410.0155
GLU 420.0195
LEU 430.0177
ASN 440.0198
PHE 450.0151
TYR 460.0172
LYS 470.0140
ILE 480.0075
PRO 490.0076
ASP 500.0118
ASN 510.0114
LEU 520.0084
PRO 530.0131
PHE 540.0151
SER 550.0167
THR 560.0118
LYS 570.0125
ASN 580.0109
LEU 590.0065
ASP 600.0088
LEU 610.0084
SER 620.0124
PHE 630.0151
ASN 640.0136
PRO 650.0144
LEU 660.0110
ARG 670.0084
HIS 680.0068
LEU 690.0049
GLY 700.0038
SER 710.0020
TYR 720.0028
SER 730.0038
PHE 740.0021
PHE 750.0056
SER 760.0081
PHE 770.0067
PRO 780.0088
GLU 790.0104
LEU 800.0077
GLN 810.0099
VAL 820.0070
LEU 830.0054
ASP 840.0068
LEU 850.0071
SER 860.0098
ARG 870.0094
CYS 880.0089
GLU 890.0086
ILE 900.0078
GLN 910.0074
THR 920.0070
ILE 930.0061
GLU 940.0049
ASP 950.0042
GLY 960.0038
ALA 970.0032
TYR 980.0032
GLN 990.0030
SER 1000.0035
LEU 1010.0049
SER 1020.0050
HIS 1030.0060
LEU 1040.0053
SER 1050.0070
THR 1060.0065
LEU 1070.0054
ILE 1080.0057
LEU 1090.0061
THR 1100.0070
GLY 1110.0077
ASN 1120.0072
PRO 1130.0074
ILE 1140.0074
GLN 1150.0078
SER 1160.0080
LEU 1170.0087
ALA 1180.0088
LEU 1190.0095
GLY 1200.0083
ALA 1210.0073
PHE 1220.0073
SER 1230.0076
GLY 1240.0068
LEU 1250.0066
SER 1260.0075
SER 1270.0062
LEU 1280.0053
GLN 1290.0048
LYS 1300.0037
LEU 1310.0043
VAL 1320.0045
ALA 1330.0054
VAL 1340.0056
GLU 1350.0065
THR 1360.0065
ASN 1370.0085
LEU 1380.0085
ALA 1390.0107
SER 1400.0103
LEU 1410.0088
GLU 1420.0120
ASN 1430.0124
PHE 1440.0105
PRO 1450.0111
ILE 1460.0097
GLY 1470.0112
HIS 1480.0122
LEU 1490.0097
LYS 1500.0105
THR 1510.0089
LEU 1520.0049
LYS 1530.0039
GLU 1540.0021
LEU 1550.0026
ASN 1560.0027
VAL 1570.0045
ALA 1580.0055
HIS 1590.0069
ASN 1600.0074
LEU 1610.0093
ILE 1620.0082
GLN 1630.0101
SER 1640.0078
PHE 1650.0047
LYS 1660.0048
LEU 1670.0061
PRO 1680.0095
GLU 1690.0112
TYR 1700.0114
PHE 1710.0084
SER 1720.0108
ASN 1730.0120
LEU 1740.0088
THR 1750.0103
ASN 1760.0087
LEU 1770.0036
GLU 1780.0042
HIS 1790.0031
LEU 1800.0019
ASP 1810.0038
LEU 1820.0052
SER 1830.0077
SER 1840.0093
ASN 1850.0086
LYS 1860.0104
ILE 1870.0084
GLN 1880.0105
SER 1890.0092
ILE 1900.0070
TYR 1910.0058
CYS 1920.0030
THR 1930.0033
ASP 1940.0035
LEU 1950.0016
ARG 1960.0041
VAL 1970.0058
LEU 1980.0045
HIS 1990.0065
GLN 2000.0095
MET 2010.0104
PRO 2020.0111
LEU 2030.0122
LEU 2040.0082
ASN 2050.0086
LEU 2060.0061
SER 2070.0087
LEU 2080.0080
ASP 2090.0091
LEU 2100.0089
SER 2110.0106
LEU 2120.0121
ASN 2130.0107
PRO 2140.0122
MET 2150.0115
ASN 2160.0124
PHE 2170.0115
ILE 2180.0099
GLN 2190.0083
PRO 2200.0087
GLY 2210.0073
ALA 2220.0061
PHE 2230.0077
LYS 2240.0083
GLU 2250.0091
ILE 2260.0083
ARG 2270.0097
LEU 2280.0101
HIS 2290.0113
LYS 2300.0116
LEU 2310.0111
THR 2320.0129
LEU 2330.0126
ARG 2340.0137
ASN 2350.0139
ASN 2360.0127
PHE 2370.0132
ASP 2380.0131
SER 2390.0121
LEU 2400.0114
ASN 2410.0110
VAL 2420.0122
MET 2430.0123
LYS 2440.0116
THR 2450.0115
CYS 2460.0123
ILE 2470.0118
GLN 2480.0108
GLY 2490.0101
LEU 2500.0107
ALA 2510.0102
GLY 2520.0103
LEU 2530.0105
GLU 2540.0111
VAL 2550.0116
HIS 2560.0123
ARG 2570.0129
LEU 2580.0120
VAL 2590.0127
LEU 2600.0121
GLY 2610.0127
GLU 2620.0139
PHE 2630.0155
ARG 2640.0157
ASN 2650.0174
GLU 2660.0168
GLY 2670.0154
ASN 2680.0135
LEU 2690.0120
GLU 2700.0114
LYS 2710.0097
PHE 2720.0084
ASP 2730.0065
LYS 2740.0061
SER 2750.0073
ALA 2760.0091
LEU 2770.0093
GLU 2780.0088
GLY 2790.0098
LEU 2800.0105
CYS 2810.0101
ASN 2820.0104
LEU 2830.0107
THR 2840.0111
ILE 2850.0116
GLU 2860.0121
GLU 2870.0114
PHE 2880.0105
ARG 2890.0110
LEU 2900.0104
ALA 2910.0116
TYR 2920.0119
LEU 2930.0103
ASP 2940.0112
TYR 2950.0093
TYR 2960.0079
LEU 2970.0054
ASP 2980.0060
GLY 2990.0044
ILE 3000.0036
ILE 3010.0052
ASP 3020.0051
LEU 3030.0048
PHE 3040.0063
ASN 3050.0071
CYS 3060.0085
LEU 3070.0076
THR 3080.0075
ASN 3090.0099
VAL 3100.0097
SER 3110.0102
SER 3120.0096
PHE 3130.0077
SER 3140.0080
LEU 3150.0071
VAL 3160.0087
SER 3170.0095
VAL 3180.0070
THR 3190.0064
ILE 3200.0043
GLU 3210.0064
ARG 3220.0071
VAL 3230.0057
LYS 3240.0083
ASP 3250.0074
PHE 3260.0066
SER 3270.0085
TYR 3280.0089
ASN 3290.0102
PHE 3300.0092
GLY 3310.0111
TRP 3320.0073
GLN 3330.0078
HIS 3340.0068
LEU 3350.0053
GLU 3360.0048
LEU 3370.0034
VAL 3380.0055
ASN 3390.0067
CYS 3400.0049
LYS 3410.0062
PHE 3420.0056
GLY 3430.0083
GLN 3440.0080
PHE 3450.0060
PRO 3460.0059
THR 3470.0079
LEU 3480.0073
LYS 3490.0095
LEU 3500.0097
LYS 3510.0117
SER 3520.0095
LEU 3530.0075
LYS 3540.0071
ARG 3550.0057
LEU 3560.0040
THR 3570.0028
PHE 3580.0005
THR 3590.0023
SER 3600.0041
ASN 3610.0035
LYS 3620.0065
GLY 3630.0074
GLY 3640.0081
ASN 3650.0063
ALA 3660.0077
PHE 3670.0065
SER 3680.0080
GLU 3690.0087
VAL 3700.0084
ASP 3710.0098
LEU 3720.0089
PRO 3730.0099
SER 3740.0099
LEU 3750.0078
GLU 3760.0072
PHE 3770.0053
LEU 3780.0039
ASP 3790.0027
LEU 3800.0022
SER 3810.0016
ARG 3820.0026
ASN 3830.0031
GLY 3840.0042
LEU 3850.0043
SER 3860.0054
PHE 3870.0049
LYS 3880.0051
GLY 3890.0048
CYS 3900.0043
CYS 3910.0044
SER 3920.0045
GLN 3930.0059
SER 3940.0069
ASP 3950.0063
PHE 3960.0068
GLY 3970.0072
THR 3980.0067
ILE 3990.0064
SER 4000.0077
LEU 4010.0064
LYS 4020.0067
TYR 4030.0058
LEU 4040.0045
ASP 4050.0037
LEU 4060.0030
SER 4070.0030
PHE 4080.0032
ASN 4090.0036
GLY 4100.0038
VAL 4110.0039
ILE 4120.0036
THR 4130.0034
MET 4140.0033
SER 4150.0034
SER 4160.0039
ASN 4170.0041
PHE 4180.0047
LEU 4190.0046
GLY 4200.0055
LEU 4210.0061
GLU 4220.0070
GLN 4230.0083
LEU 4240.0073
GLU 4250.0083
HIS 4260.0073
LEU 4270.0053
ASP 4280.0046
PHE 4290.0037
GLN 4300.0032
HIS 4310.0029
SER 4320.0033
ASN 4330.0028
LEU 4340.0028
LYS 4350.0025
GLN 4360.0025
MET 4370.0029
SER 4380.0037
GLU 4390.0040
PHE 4400.0052
SER 4410.0061
VAL 4420.0050
PHE 4430.0063
LEU 4440.0072
SER 4450.0079
LEU 4460.0083
ARG 4470.0102
ASN 4480.0107
LEU 4490.0092
ILE 4500.0099
TYR 4510.0085
LEU 4520.0061
ASP 4530.0049
ILE 4540.0034
SER 4550.0028
HIS 4560.0024
THR 4570.0017
HIS 4580.0004
THR 4590.0011
ARG 4600.0020
VAL 4610.0030
ALA 4620.0055
PHE 4630.0066
ASN 4640.0074
GLY 4650.0081
ILE 4660.0061
PHE 4670.0071
ASN 4680.0091
GLY 4690.0105
LEU 4700.0099
SER 4710.0118
SER 4720.0123
LEU 4730.0100
GLU 4740.0098
VAL 4750.0081
LEU 4760.0060
LYS 4770.0039
MET 4780.0021
ALA 4790.0027
GLY 4800.0031
ASN 4810.0016
SER 4820.0032
PHE 4830.0041
GLN 4840.0067
GLU 4850.0087
ASN 4860.0068
PHE 4870.0065
LEU 4880.0045
PRO 4890.0062
ASP 4900.0070
ILE 4910.0065
PHE 4920.0068
THR 4930.0095
GLU 4940.0109
LEU 4950.0092
ARG 4960.0105
ASN 4970.0107
LEU 4980.0080
THR 4990.0076
PHE 5000.0063
LEU 5010.0038
ASP 5020.0033
LEU 5030.0023
SER 5040.0043
GLN 5050.0053
CYS 5060.0040
GLN 5070.0060
LEU 5080.0052
GLU 5090.0067
GLN 5100.0060
LEU 5110.0044
SER 5120.0062
PRO 5130.0060
THR 5140.0058
ALA 5150.0043
PHE 5160.0029
ASN 5170.0055
SER 5180.0067
LEU 5190.0053
SER 5200.0058
SER 5210.0065
LEU 5220.0037
GLN 5230.0045
VAL 5240.0044
LEU 5250.0029
ASN 5260.0044
MET 5270.0047
SER 5280.0061
HIS 5290.0071
ASN 5300.0065
ASN 5310.0072
PHE 5320.0059
PHE 5330.0061
SER 5340.0056
LEU 5350.0051
ASP 5360.0047
THR 5370.0045
PHE 5380.0041
PRO 5390.0032
TYR 5400.0030
LYS 5410.0032
CYS 5420.0021
LEU 5430.0013
ASN 5440.0016
SER 5450.0026
LEU 5460.0027
GLN 5470.0041
VAL 5480.0047
LEU 5490.0047
ASP 5500.0055
TYR 5510.0060
SER 5520.0063
LEU 5530.0068
ASN 5540.0067
HIS 5550.0065
ILE 5560.0058
MET 5570.0053
THR 5580.0050
SER 5590.0046
LYS 5600.0045
LYS 5610.0043
GLN 5620.0043
GLU 5630.0048
LEU 5640.0044
GLN 5650.0050
HIS 5660.0052
PHE 5670.0047
PRO 5680.0041
SER 5690.0043
SER 5700.0040
LEU 5710.0045
ALA 5720.0048
PHE 5730.0051
LEU 5740.0051
ASN 5750.0055
LEU 5760.0054
THR 5770.0044
GLN 5780.0042
ASN 5790.0043
ASP 5800.0041
PHE 5810.0035
ALA 5820.0056
CYS 5830.0058
THR 5840.0095
CYS 5850.0109
GLU 5860.0120
HIS 5870.0072
GLN 5880.0056
SER 5890.0058
PHE 5900.0050
LEU 5910.0020
GLN 5920.0019
TRP 5930.0037
ILE 5940.0033
LYS 5950.0028
ASP 5960.0040
GLN 5970.0047
ARG 5980.0044
GLN 5990.0059
LEU 6000.0059
LEU 6010.0046
VAL 6020.0061
GLU 6030.0050
VAL 6040.0040
GLU 6050.0039
ARG 6060.0026
MET 6070.0033
GLU 6080.0024
CYS 6090.0033
ALA 6100.0042
THR 6110.0071
PRO 6120.0114
SER 6130.0127
ASP 6140.0145
LYS 6150.0107
GLN 6160.0082
GLY 6170.0068
MET 6180.0073
PRO 6190.0055
VAL 6200.0028
LEU 6210.0044
SER 6220.0094
LEU 6230.0079
ASN 6240.0103
ILE 6250.0081
THR 6260.0123
CYS 6270.0287
GLU 10.0243
ALA 20.0149
ALA 30.0220
ALA 40.0222
LYS 50.0109
MET 60.0165
GLN 70.0194
ARG 80.0170
LEU 90.0172
VAL 100.0212
LEU 110.0156
LEU 120.0170
LEU 130.0149
ALA 140.0123
ILE 150.0136
SER 160.0138
LEU 170.0128
LEU 180.0080
LEU 190.0108
TYR 200.0211
GLN 210.0212
ASP 220.0135
LEU 230.0126
PRO 240.0159
VAL 250.0236
ARG 260.0093
SER 270.0080
GLU 280.0087
PHE 290.0074
GLU 300.0065
LEU 310.0069
ASP 320.0078
ARG 330.0080
ILE 340.0068
CYS 350.0064
GLY 360.0043
TYR 370.0045
GLY 380.0060
THR 390.0073
ALA 400.0067
ARG 410.0064
CYS 420.0061
ARG 430.0076
LYS 440.0091
LYS 450.0081
CYS 460.0039
ARG 470.0041
SER 480.0040
GLN 490.0042
GLU 500.0042
TYR 510.0050
ARG 520.0054
ILE 530.0054
GLY 540.0071
ARG 550.0082
CYS 560.0080
PRO 570.0094
ASN 580.0102
THR 590.0110
TYR 600.0096
ALA 610.0054
CYS 620.0048
CYS 630.0040
LEU 640.0037
ARG 650.0033
LYS 660.0027
TRP 670.0035
ASP 680.0029
GLU 690.0044
SER 700.0047
LEU 710.0085
LEU 720.0092
ASN 730.0073
ARG 740.0079
THR 750.0099
LYS 760.0112
PRO 770.0117
GLU 780.0088
ALA 790.0098
ALA 800.0132
ALA 810.0146
LYS 820.0098
LYS 830.0059
GLU 840.0061
MET 850.0041
ASN 860.0030
LEU 870.0073
SER 880.0039
VAL 890.0066
GLY 900.0060
LEU 910.0020
GLY 920.0147
GLY 930.0317
GLY 940.0384
SER 950.0277
ASN 960.0129
LEU 970.0122
SER 980.0110
VAL 990.0139
GLY 1000.0135
LEU 1010.0126
GLY 1020.0122
GLU 1030.0117
ILE 1040.0158
GLY 1050.0202
GLY 1060.0090
GLY 1070.0023
SER 1080.0080
LYS 1090.0137
LEU 1100.0202
LEU 1110.0221
ASP 1120.0273
ILE 1130.0216
ASN 1140.0297
LEU 1150.0252
GLY 1160.0395
ARG 1170.0545
GLY 1180.0685
GLY 1190.0574
GLY 1200.0297
SER 1210.0098
MET 1220.0102
VAL 1230.0120
ASP 1240.0131
LEU 1250.0144
THR 1260.0139
PHE 1270.0119
GLY 1280.0102
GLY 1290.0088
VAL 1300.0075
GLY 1310.0029
GLY 1320.0113
GLY 1330.0112
SER 1340.0110
THR 1350.0065
PHE 1360.0069
THR 1370.0043
PHE 1380.0058
PHE 1390.0045
PRO 1400.0067
LEU 1410.0136
VAL 1420.0463
ILE 1430.0590
GLY 1440.0920
GLY 1450.1127
GLY 1460.0317
SER 1470.0135
ASP 1480.0199
ALA 1490.0132
MET 1500.0182
TYR 1510.0102
LEU 1520.0111
GLY 1530.0104
PHE 1540.0107
ALA 1550.0102
ALA 1560.0187
GLY 1570.0194
GLY 1580.0257
GLY 1590.0230
SER 1600.0197
ALA 1610.0136
GLY 1620.0120
GLY 1630.0117
GLU 1640.0109
ASN 1650.0098
HIS 1660.0107
VAL 1670.0081
ALA 1680.0077
PHE 1690.0065
GLY 1700.0051
PRO 1710.0386
GLY 1720.0457
PRO 1730.0471
GLY 1740.0252
VAL 1750.0048
ASP 1760.0062
LEU 1770.0056
THR 1780.0072
PHE 1790.0083
GLY 1800.0106
GLY 1810.0122
VAL 1820.0085
GLN 1830.0069
PHE 1840.0076
ALA 1850.0111
MET 1860.0114
VAL 1870.0184
ASN 1880.0084
ASN 1890.0190
GLY 1900.0180
PRO 1910.0336
GLY 1920.0295
PRO 1930.0189
GLY 1940.0194
GLU 1950.0264
SER 1960.0511
PHE 1970.0349
THR 1980.0229
ALA 1990.0146
GLN 2000.0129
PRO 2010.0140
ALA 2020.0132
ASP 2030.0192
MET 2040.0163
GLN 2050.0144
ALA 2060.0153
GLY 2070.0132
ILE 2080.0102
LYS 2090.0047
GLY 2100.0053
PRO 2110.0026
GLY 2120.0062
PRO 2130.0035
GLY 2140.0087
GLY 2150.0127
SER 2160.0112
ILE 2170.0095
GLN 2180.0128
VAL 2190.0164
ILE 2200.0096
ASN 2210.0495
GLY 2220.0383
SER 2230.0270
THR 2240.0205
ILE 2250.0169
GLY 2260.0152
THR 2270.0143
GLY 2280.0082
SER 2290.0062
LYS 2300.0071
LYS 2310.0085
THR 2320.0104
ILE 2330.0080
LEU 2340.0071
ILE 2350.0124
TYR 2360.0065
SER 2370.0063
ILE 2380.0060
ILE 2390.0078
GLY 2400.0084
VAL 2410.0044
LYS 2420.0041
LYS 2430.0035
GLY 2440.0036
THR 2450.0042
LEU 2460.0058
ALA 2470.0080
TRP 2480.0086
ALA 2490.0121
ARG 2500.0139
THR 2510.0175
GLY 2520.0168
PHE 2530.0098
SER 2540.0093
PRO 2550.0080
ALA 2560.0069
LYS 2570.0070
LYS 2580.0063
LEU 2590.0045
ASN 2600.0056
ALA 2610.0065
GLY 2620.0054
VAL 2630.0071
VAL 2640.0106
ARG 2650.0090
VAL 2660.0033
PHE 2670.0023
PHE 2680.0039
LEU 2690.0015
ASN 2700.0040
GLN 2710.0024
LYS 2720.0026
LYS 2730.0038
ALA 2740.0045
LYS 2750.0054
ASP 2760.0063
VAL 2770.0051
LEU 2780.0049
ARG 2790.0057
LYS 2800.0058
THR 2810.0055
SER 2820.0046
ARG 2830.0034
PRO 2840.0031
MET 2850.0040
VAL 2860.0054
ASP 2870.0042
LEU 2880.0017
THR 2890.0018
PHE 2900.0040
GLY 2910.0030
GLY 2920.0054

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.