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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 72  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0994
GLU 270.0107
PRO 280.0162
CYS 290.0117
VAL 300.0159
GLU 310.0142
VAL 320.0215
VAL 330.0225
PRO 340.0174
ASN 350.0169
ILE 360.0197
THR 370.0153
TYR 380.0099
GLN 390.0129
CYS 400.0105
MET 410.0165
GLU 420.0208
LEU 430.0201
ASN 440.0215
PHE 450.0167
TYR 460.0195
LYS 470.0148
ILE 480.0087
PRO 490.0093
ASP 500.0144
ASN 510.0123
LEU 520.0076
PRO 530.0128
PHE 540.0174
SER 550.0188
THR 560.0133
LYS 570.0143
ASN 580.0119
LEU 590.0067
ASP 600.0078
LEU 610.0061
SER 620.0093
PHE 630.0120
ASN 640.0112
PRO 650.0120
LEU 660.0092
ARG 670.0048
HIS 680.0041
LEU 690.0027
GLY 700.0041
SER 710.0050
TYR 720.0077
SER 730.0068
PHE 740.0076
PHE 750.0111
SER 760.0131
PHE 770.0110
PRO 780.0140
GLU 790.0144
LEU 800.0108
GLN 810.0116
VAL 820.0058
LEU 830.0038
ASP 840.0034
LEU 850.0024
SER 860.0048
ARG 870.0036
CYS 880.0034
GLU 890.0024
ILE 900.0021
GLN 910.0023
THR 920.0012
ILE 930.0009
GLU 940.0007
ASP 950.0016
GLY 960.0025
ALA 970.0030
TYR 980.0039
GLN 990.0054
SER 1000.0075
LEU 1010.0073
SER 1020.0059
HIS 1030.0074
LEU 1040.0058
SER 1050.0068
THR 1060.0057
LEU 1070.0020
ILE 1080.0017
LEU 1090.0025
THR 1100.0034
GLY 1110.0042
ASN 1120.0032
PRO 1130.0042
ILE 1140.0043
GLN 1150.0054
SER 1160.0056
LEU 1170.0060
ALA 1180.0059
LEU 1190.0070
GLY 1200.0053
ALA 1210.0038
PHE 1220.0038
SER 1230.0041
GLY 1240.0040
LEU 1250.0042
SER 1260.0056
SER 1270.0061
LEU 1280.0043
GLN 1290.0054
LYS 1300.0035
LEU 1310.0017
VAL 1320.0012
ALA 1330.0036
VAL 1340.0048
GLU 1350.0071
THR 1360.0070
ASN 1370.0123
LEU 1380.0115
ALA 1390.0141
SER 1400.0132
LEU 1410.0113
GLU 1420.0157
ASN 1430.0155
PHE 1440.0118
PRO 1450.0122
ILE 1460.0102
GLY 1470.0130
HIS 1480.0135
LEU 1490.0102
LYS 1500.0127
THR 1510.0112
LEU 1520.0066
LYS 1530.0067
GLU 1540.0038
LEU 1550.0010
ASN 1560.0024
VAL 1570.0041
ALA 1580.0062
HIS 1590.0099
ASN 1600.0105
LEU 1610.0133
ILE 1620.0108
GLN 1630.0126
SER 1640.0105
PHE 1650.0066
LYS 1660.0097
LEU 1670.0107
PRO 1680.0147
GLU 1690.0176
TYR 1700.0165
PHE 1710.0132
SER 1720.0170
ASN 1730.0172
LEU 1740.0129
THR 1750.0159
ASN 1760.0137
LEU 1770.0068
GLU 1780.0070
HIS 1790.0045
LEU 1800.0015
ASP 1810.0030
LEU 1820.0036
SER 1830.0066
SER 1840.0098
ASN 1850.0095
LYS 1860.0116
ILE 1870.0068
GLN 1880.0086
SER 1890.0065
ILE 1900.0036
TYR 1910.0035
CYS 1920.0045
THR 1930.0090
ASP 1940.0077
LEU 1950.0073
ARG 1960.0118
VAL 1970.0128
LEU 1980.0104
HIS 1990.0127
GLN 2000.0169
MET 2010.0170
PRO 2020.0161
LEU 2030.0175
LEU 2040.0128
ASN 2050.0118
LEU 2060.0070
SER 2070.0058
LEU 2080.0043
ASP 2090.0051
LEU 2100.0051
SER 2110.0072
LEU 2120.0080
ASN 2130.0070
PRO 2140.0087
MET 2150.0079
ASN 2160.0090
PHE 2170.0082
ILE 2180.0062
GLN 2190.0052
PRO 2200.0073
GLY 2210.0072
ALA 2220.0049
PHE 2230.0071
LYS 2240.0096
GLU 2250.0119
ILE 2260.0101
ARG 2270.0083
LEU 2280.0076
HIS 2290.0083
LYS 2300.0078
LEU 2310.0073
THR 2320.0072
LEU 2330.0077
ARG 2340.0073
ASN 2350.0078
ASN 2360.0082
PHE 2370.0095
ASP 2380.0102
SER 2390.0113
LEU 2400.0118
ASN 2410.0129
VAL 2420.0114
MET 2430.0109
LYS 2440.0123
THR 2450.0121
CYS 2460.0106
ILE 2470.0109
GLN 2480.0119
GLY 2490.0098
LEU 2500.0098
ALA 2510.0118
GLY 2520.0119
LEU 2530.0105
GLU 2540.0107
VAL 2550.0093
HIS 2560.0090
ARG 2570.0084
LEU 2580.0082
VAL 2590.0076
LEU 2600.0079
GLY 2610.0078
GLU 2620.0061
PHE 2630.0040
ARG 2640.0032
ASN 2650.0043
GLU 2660.0060
GLY 2670.0078
ASN 2680.0074
LEU 2690.0085
GLU 2700.0095
LYS 2710.0094
PHE 2720.0085
ASP 2730.0093
LYS 2740.0093
SER 2750.0113
ALA 2760.0107
LEU 2770.0103
GLU 2780.0121
GLY 2790.0122
LEU 2800.0111
CYS 2810.0126
ASN 2820.0130
LEU 2830.0117
THR 2840.0116
ILE 2850.0100
GLU 2860.0096
GLU 2870.0071
PHE 2880.0067
ARG 2890.0060
LEU 2900.0057
ALA 2910.0049
TYR 2920.0035
LEU 2930.0040
ASP 2940.0045
TYR 2950.0048
TYR 2960.0029
LEU 2970.0025
ASP 2980.0026
GLY 2990.0017
ILE 3000.0024
ILE 3010.0027
ASP 3020.0059
LEU 3030.0054
PHE 3040.0055
ASN 3050.0066
CYS 3060.0074
LEU 3070.0056
THR 3080.0057
ASN 3090.0069
VAL 3100.0062
SER 3110.0064
SER 3120.0047
PHE 3130.0041
SER 3140.0038
LEU 3150.0033
VAL 3160.0031
SER 3170.0021
VAL 3180.0021
THR 3190.0026
ILE 3200.0027
GLU 3210.0041
ARG 3220.0054
VAL 3230.0056
LYS 3240.0061
ASP 3250.0050
PHE 3260.0056
SER 3270.0063
TYR 3280.0053
ASN 3290.0056
PHE 3300.0049
GLY 3310.0056
TRP 3320.0042
GLN 3330.0046
HIS 3340.0044
LEU 3350.0042
GLU 3360.0040
LEU 3370.0041
VAL 3380.0040
ASN 3390.0039
CYS 3400.0040
LYS 3410.0046
PHE 3420.0061
GLY 3430.0074
GLN 3440.0078
PHE 3450.0075
PRO 3460.0071
THR 3470.0088
LEU 3480.0082
LYS 3490.0088
LEU 3500.0083
LYS 3510.0088
SER 3520.0083
LEU 3530.0072
LYS 3540.0063
ARG 3550.0054
LEU 3560.0056
THR 3570.0048
PHE 3580.0050
THR 3590.0047
SER 3600.0048
ASN 3610.0053
LYS 3620.0054
GLY 3630.0061
GLY 3640.0070
ASN 3650.0069
ALA 3660.0078
PHE 3670.0076
SER 3680.0089
GLU 3690.0092
VAL 3700.0092
ASP 3710.0100
LEU 3720.0114
PRO 3730.0125
SER 3740.0114
LEU 3750.0083
GLU 3760.0067
PHE 3770.0047
LEU 3780.0046
ASP 3790.0040
LEU 3800.0043
SER 3810.0038
ARG 3820.0034
ASN 3830.0047
GLY 3840.0047
LEU 3850.0046
SER 3860.0045
PHE 3870.0041
LYS 3880.0039
GLY 3890.0027
CYS 3900.0021
CYS 3910.0026
SER 3920.0041
GLN 3930.0065
SER 3940.0071
ASP 3950.0063
PHE 3960.0074
GLY 3970.0083
THR 3980.0077
ILE 3990.0083
SER 4000.0090
LEU 4010.0064
LYS 4020.0061
TYR 4030.0045
LEU 4040.0033
ASP 4050.0023
LEU 4060.0024
SER 4070.0020
PHE 4080.0029
ASN 4090.0032
GLY 4100.0037
VAL 4110.0034
ILE 4120.0028
THR 4130.0029
MET 4140.0021
SER 4150.0019
SER 4160.0022
ASN 4170.0040
PHE 4180.0039
LEU 4190.0050
GLY 4200.0065
LEU 4210.0061
GLU 4220.0070
GLN 4230.0078
LEU 4240.0056
GLU 4250.0062
HIS 4260.0039
LEU 4270.0026
ASP 4280.0018
PHE 4290.0016
GLN 4300.0021
HIS 4310.0029
SER 4320.0028
ASN 4330.0037
LEU 4340.0032
LYS 4350.0039
GLN 4360.0042
MET 4370.0060
SER 4380.0080
GLU 4390.0081
PHE 4400.0079
SER 4410.0077
VAL 4420.0056
PHE 4430.0057
LEU 4440.0073
SER 4450.0072
LEU 4460.0067
ARG 4470.0084
ASN 4480.0079
LEU 4490.0059
ILE 4500.0059
TYR 4510.0037
LEU 4520.0027
ASP 4530.0022
ILE 4540.0026
SER 4550.0027
HIS 4560.0033
THR 4570.0030
HIS 4580.0049
THR 4590.0050
ARG 4600.0070
VAL 4610.0074
ALA 4620.0104
PHE 4630.0104
ASN 4640.0105
GLY 4650.0100
ILE 4660.0081
PHE 4670.0074
ASN 4680.0090
GLY 4690.0089
LEU 4700.0075
SER 4710.0089
SER 4720.0076
LEU 4730.0058
GLU 4740.0049
VAL 4750.0031
LEU 4760.0029
LYS 4770.0024
MET 4780.0034
ALA 4790.0035
GLY 4800.0044
ASN 4810.0049
SER 4820.0067
PHE 4830.0072
GLN 4840.0093
GLU 4850.0099
ASN 4860.0078
PHE 4870.0074
LEU 4880.0060
PRO 4890.0069
ASP 4900.0066
ILE 4910.0065
PHE 4920.0062
THR 4930.0079
GLU 4940.0083
LEU 4950.0064
ARG 4960.0071
ASN 4970.0060
LEU 4980.0042
THR 4990.0031
PHE 5000.0015
LEU 5010.0014
ASP 5020.0019
LEU 5030.0028
SER 5040.0032
GLN 5050.0040
CYS 5060.0041
GLN 5070.0057
LEU 5080.0048
GLU 5090.0054
GLN 5100.0045
LEU 5110.0032
SER 5120.0050
PRO 5130.0035
THR 5140.0035
ALA 5150.0036
PHE 5160.0019
ASN 5170.0028
SER 5180.0038
LEU 5190.0028
SER 5200.0033
SER 5210.0035
LEU 5220.0013
GLN 5230.0023
VAL 5240.0022
LEU 5250.0019
ASN 5260.0029
MET 5270.0033
SER 5280.0038
HIS 5290.0043
ASN 5300.0043
ASN 5310.0051
PHE 5320.0049
PHE 5330.0055
SER 5340.0056
LEU 5350.0055
ASP 5360.0053
THR 5370.0053
PHE 5380.0048
PRO 5390.0034
TYR 5400.0037
LYS 5410.0046
CYS 5420.0021
LEU 5430.0023
ASN 5440.0034
SER 5450.0035
LEU 5460.0033
GLN 5470.0044
VAL 5480.0045
LEU 5490.0044
ASP 5500.0047
TYR 5510.0050
SER 5520.0049
LEU 5530.0049
ASN 5540.0050
HIS 5550.0054
ILE 5560.0058
MET 5570.0065
THR 5580.0066
SER 5590.0067
LYS 5600.0071
LYS 5610.0073
GLN 5620.0075
GLU 5630.0074
LEU 5640.0066
GLN 5650.0068
HIS 5660.0068
PHE 5670.0056
PRO 5680.0053
SER 5690.0062
SER 5700.0054
LEU 5710.0053
ALA 5720.0052
PHE 5730.0054
LEU 5740.0052
ASN 5750.0054
LEU 5760.0053
THR 5770.0050
GLN 5780.0049
ASN 5790.0053
ASP 5800.0054
PHE 5810.0053
ALA 5820.0079
CYS 5830.0066
THR 5840.0105
CYS 5850.0119
GLU 5860.0124
HIS 5870.0072
GLN 5880.0051
SER 5890.0040
PHE 5900.0046
LEU 5910.0031
GLN 5920.0025
TRP 5930.0033
ILE 5940.0034
LYS 5950.0031
ASP 5960.0040
GLN 5970.0038
ARG 5980.0034
GLN 5990.0046
LEU 6000.0053
LEU 6010.0047
VAL 6020.0051
GLU 6030.0040
VAL 6040.0029
GLU 6050.0024
ARG 6060.0035
MET 6070.0037
GLU 6080.0034
CYS 6090.0049
ALA 6100.0070
THR 6110.0091
PRO 6120.0117
SER 6130.0127
ASP 6140.0123
LYS 6150.0091
GLN 6160.0080
GLY 6170.0054
MET 6180.0046
PRO 6190.0027
VAL 6200.0029
LEU 6210.0023
SER 6220.0051
LEU 6230.0056
ASN 6240.0098
ILE 6250.0100
THR 6260.0149
CYS 6270.0397
GLU 10.0384
ALA 20.0186
ALA 30.0242
ALA 40.0226
LYS 50.0051
MET 60.0214
GLN 70.0233
ARG 80.0192
LEU 90.0240
VAL 100.0297
LEU 110.0219
LEU 120.0227
LEU 130.0158
ALA 140.0099
ILE 150.0128
SER 160.0213
LEU 170.0275
LEU 180.0188
LEU 190.0159
TYR 200.0397
GLN 210.0403
ASP 220.0241
LEU 230.0217
PRO 240.0287
VAL 250.0453
ARG 260.0111
SER 270.0070
GLU 280.0094
PHE 290.0081
GLU 300.0063
LEU 310.0066
ASP 320.0090
ARG 330.0085
ILE 340.0064
CYS 350.0071
GLY 360.0051
TYR 370.0033
GLY 380.0041
THR 390.0060
ALA 400.0073
ARG 410.0066
CYS 420.0091
ARG 430.0126
LYS 440.0164
LYS 450.0164
CYS 460.0117
ARG 470.0117
SER 480.0126
GLN 490.0119
GLU 500.0117
TYR 510.0128
ARG 520.0093
ILE 530.0072
GLY 540.0064
ARG 550.0091
CYS 560.0116
PRO 570.0172
ASN 580.0197
THR 590.0178
TYR 600.0156
ALA 610.0088
CYS 620.0075
CYS 630.0082
LEU 640.0083
ARG 650.0097
LYS 660.0122
TRP 670.0118
ASP 680.0085
GLU 690.0083
SER 700.0068
LEU 710.0099
LEU 720.0107
ASN 730.0079
ARG 740.0098
THR 750.0128
LYS 760.0072
PRO 770.0092
GLU 780.0096
ALA 790.0134
ALA 800.0155
ALA 810.0153
LYS 820.0115
LYS 830.0101
GLU 840.0065
MET 850.0055
ASN 860.0033
LEU 870.0051
SER 880.0035
VAL 890.0045
GLY 900.0033
LEU 910.0008
GLY 920.0084
GLY 930.0223
GLY 940.0271
SER 950.0198
ASN 960.0094
LEU 970.0084
SER 980.0063
VAL 990.0069
GLY 1000.0048
LEU 1010.0046
GLY 1020.0057
GLU 1030.0079
ILE 1040.0080
GLY 1050.0117
GLY 1060.0075
GLY 1070.0011
SER 1080.0065
LYS 1090.0113
LEU 1100.0172
LEU 1110.0204
ASP 1120.0234
ILE 1130.0184
ASN 1140.0247
LEU 1150.0213
GLY 1160.0381
ARG 1170.0514
GLY 1180.0611
GLY 1190.0474
GLY 1200.0200
SER 1210.0069
MET 1220.0072
VAL 1230.0076
ASP 1240.0080
LEU 1250.0084
THR 1260.0069
PHE 1270.0037
GLY 1280.0023
GLY 1290.0051
VAL 1300.0072
GLY 1310.0215
GLY 1320.0216
GLY 1330.0171
SER 1340.0112
THR 1350.0032
PHE 1360.0088
THR 1370.0082
PHE 1380.0089
PHE 1390.0089
PRO 1400.0100
LEU 1410.0113
VAL 1420.0391
ILE 1430.0517
GLY 1440.0805
GLY 1450.0994
GLY 1460.0264
SER 1470.0114
ASP 1480.0169
ALA 1490.0108
MET 1500.0155
TYR 1510.0075
LEU 1520.0092
GLY 1530.0075
PHE 1540.0099
ALA 1550.0081
ALA 1560.0113
GLY 1570.0056
GLY 1580.0124
GLY 1590.0151
SER 1600.0205
ALA 1610.0105
GLY 1620.0096
GLY 1630.0064
GLU 1640.0032
ASN 1650.0057
HIS 1660.0056
VAL 1670.0051
ALA 1680.0050
PHE 1690.0046
GLY 1700.0044
PRO 1710.0164
GLY 1720.0194
PRO 1730.0192
GLY 1740.0097
VAL 1750.0006
ASP 1760.0046
LEU 1770.0051
THR 1780.0044
PHE 1790.0051
GLY 1800.0045
GLY 1810.0056
VAL 1820.0077
GLN 1830.0070
PHE 1840.0081
ALA 1850.0083
MET 1860.0028
VAL 1870.0057
ASN 1880.0029
ASN 1890.0045
GLY 1900.0064
PRO 1910.0120
GLY 1920.0109
PRO 1930.0055
GLY 1940.0055
GLU 1950.0075
SER 1960.0194
PHE 1970.0116
THR 1980.0106
ALA 1990.0087
GLN 2000.0023
PRO 2010.0058
ALA 2020.0055
ASP 2030.0073
MET 2040.0052
GLN 2050.0038
ALA 2060.0076
GLY 2070.0110
ILE 2080.0099
LYS 2090.0098
GLY 2100.0152
PRO 2110.0062
GLY 2120.0059
PRO 2130.0078
GLY 2140.0147
GLY 2150.0158
SER 2160.0112
ILE 2170.0133
GLN 2180.0164
VAL 2190.0199
ILE 2200.0270
ASN 2210.0350
GLY 2220.0260
SER 2230.0100
THR 2240.0208
ILE 2250.0279
GLY 2260.0233
THR 2270.0131
GLY 2280.0038
SER 2290.0186
LYS 2300.0166
LYS 2310.0165
THR 2320.0193
ILE 2330.0174
LEU 2340.0171
ILE 2350.0207
TYR 2360.0182
SER 2370.0157
ILE 2380.0182
ILE 2390.0126
GLY 2400.0184
VAL 2410.0096
LYS 2420.0054
LYS 2430.0035
GLY 2440.0058
THR 2450.0051
LEU 2460.0099
ALA 2470.0048
TRP 2480.0093
ALA 2490.0066
ARG 2500.0086
THR 2510.0047
GLY 2520.0114
PHE 2530.0046
SER 2540.0111
PRO 2550.0025
ALA 2560.0085
LYS 2570.0043
LYS 2580.0077
LEU 2590.0114
ASN 2600.0162
ALA 2610.0297
GLY 2620.0221
VAL 2630.0185
VAL 2640.0238
ARG 2650.0178
VAL 2660.0143
PHE 2670.0149
PHE 2680.0156
LEU 2690.0162
ASN 2700.0196
GLN 2710.0129
LYS 2720.0137
LYS 2730.0168
ALA 2740.0140
LYS 2750.0107
ASP 2760.0107
VAL 2770.0091
LEU 2780.0040
ARG 2790.0046
LYS 2800.0090
THR 2810.0052
SER 2820.0047
ARG 2830.0046
PRO 2840.0062
MET 2850.0082
VAL 2860.0107
ASP 2870.0121
LEU 2880.0096
THR 2890.0101
PHE 2900.0065
GLY 2910.0103
GLY 2920.0089

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.