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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 73  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0918
GLU 270.0071
PRO 280.0058
CYS 290.0044
VAL 300.0065
GLU 310.0083
VAL 320.0102
VAL 330.0109
PRO 340.0103
ASN 350.0077
ILE 360.0073
THR 370.0066
TYR 380.0044
GLN 390.0038
CYS 400.0012
MET 410.0028
GLU 420.0030
LEU 430.0019
ASN 440.0032
PHE 450.0030
TYR 460.0044
LYS 470.0051
ILE 480.0034
PRO 490.0023
ASP 500.0043
ASN 510.0052
LEU 520.0036
PRO 530.0036
PHE 540.0020
SER 550.0031
THR 560.0031
LYS 570.0041
ASN 580.0043
LEU 590.0030
ASP 600.0035
LEU 610.0032
SER 620.0042
PHE 630.0046
ASN 640.0042
PRO 650.0049
LEU 660.0047
ARG 670.0044
HIS 680.0041
LEU 690.0039
GLY 700.0037
SER 710.0034
TYR 720.0035
SER 730.0034
PHE 740.0029
PHE 750.0026
SER 760.0020
PHE 770.0018
PRO 780.0024
GLU 790.0025
LEU 800.0029
GLN 810.0039
VAL 820.0040
LEU 830.0038
ASP 840.0039
LEU 850.0041
SER 860.0044
ARG 870.0044
CYS 880.0044
GLU 890.0042
ILE 900.0041
GLN 910.0039
THR 920.0036
ILE 930.0035
GLU 940.0033
ASP 950.0030
GLY 960.0033
ALA 970.0037
TYR 980.0036
GLN 990.0037
SER 1000.0035
LEU 1010.0035
SER 1020.0039
HIS 1030.0038
LEU 1040.0035
SER 1050.0033
THR 1060.0030
LEU 1070.0032
ILE 1080.0032
LEU 1090.0032
THR 1100.0033
GLY 1110.0034
ASN 1120.0033
PRO 1130.0029
ILE 1140.0027
GLN 1150.0025
SER 1160.0026
LEU 1170.0022
ALA 1180.0023
LEU 1190.0020
GLY 1200.0026
ALA 1210.0029
PHE 1220.0028
SER 1230.0031
GLY 1240.0033
LEU 1250.0031
SER 1260.0032
SER 1270.0024
LEU 1280.0020
GLN 1290.0020
LYS 1300.0020
LEU 1310.0014
VAL 1320.0020
ALA 1330.0017
VAL 1340.0022
GLU 1350.0022
THR 1360.0016
ASN 1370.0009
LEU 1380.0010
ALA 1390.0018
SER 1400.0024
LEU 1410.0022
GLU 1420.0022
ASN 1430.0017
PHE 1440.0011
PRO 1450.0011
ILE 1460.0013
GLY 1470.0012
HIS 1480.0011
LEU 1490.0012
LYS 1500.0013
THR 1510.0018
LEU 1520.0014
LYS 1530.0022
GLU 1540.0023
LEU 1550.0018
ASN 1560.0020
VAL 1570.0023
ALA 1580.0028
HIS 1590.0025
ASN 1600.0020
LEU 1610.0022
ILE 1620.0033
GLN 1630.0037
SER 1640.0037
PHE 1650.0038
LYS 1660.0036
LEU 1670.0034
PRO 1680.0030
GLU 1690.0029
TYR 1700.0022
PHE 1710.0026
SER 1720.0025
ASN 1730.0020
LEU 1740.0021
THR 1750.0024
ASN 1760.0026
LEU 1770.0023
GLU 1780.0027
HIS 1790.0028
LEU 1800.0029
ASP 1810.0031
LEU 1820.0035
SER 1830.0038
SER 1840.0037
ASN 1850.0036
LYS 1860.0039
ILE 1870.0040
GLN 1880.0040
SER 1890.0039
ILE 1900.0038
TYR 1910.0037
CYS 1920.0037
THR 1930.0038
ASP 1940.0039
LEU 1950.0038
ARG 1960.0038
VAL 1970.0035
LEU 1980.0035
HIS 1990.0036
GLN 2000.0035
MET 2010.0034
PRO 2020.0034
LEU 2030.0034
LEU 2040.0032
ASN 2050.0032
LEU 2060.0031
SER 2070.0034
LEU 2080.0035
ASP 2090.0037
LEU 2100.0037
SER 2110.0038
LEU 2120.0042
ASN 2130.0040
PRO 2140.0041
MET 2150.0038
ASN 2160.0038
PHE 2170.0036
ILE 2180.0033
GLN 2190.0028
PRO 2200.0024
GLY 2210.0024
ALA 2220.0027
PHE 2230.0029
LYS 2240.0024
GLU 2250.0026
ILE 2260.0032
ARG 2270.0027
LEU 2280.0030
HIS 2290.0034
LYS 2300.0034
LEU 2310.0030
THR 2320.0035
LEU 2330.0032
ARG 2340.0036
ASN 2350.0037
ASN 2360.0034
PHE 2370.0033
ASP 2380.0034
SER 2390.0029
LEU 2400.0023
ASN 2410.0023
VAL 2420.0028
MET 2430.0027
LYS 2440.0023
THR 2450.0024
CYS 2460.0029
ILE 2470.0028
GLN 2480.0023
GLY 2490.0025
LEU 2500.0031
ALA 2510.0029
GLY 2520.0030
LEU 2530.0032
GLU 2540.0036
VAL 2550.0037
HIS 2560.0042
ARG 2570.0046
LEU 2580.0037
VAL 2590.0037
LEU 2600.0030
GLY 2610.0029
GLU 2620.0031
PHE 2630.0040
ARG 2640.0041
ASN 2650.0050
GLU 2660.0047
GLY 2670.0040
ASN 2680.0032
LEU 2690.0025
GLU 2700.0028
LYS 2710.0023
PHE 2720.0013
ASP 2730.0019
LYS 2740.0027
SER 2750.0027
ALA 2760.0022
LEU 2770.0029
GLU 2780.0032
GLY 2790.0034
LEU 2800.0039
CYS 2810.0045
ASN 2820.0037
LEU 2830.0039
THR 2840.0044
ILE 2850.0046
GLU 2860.0052
GLU 2870.0051
PHE 2880.0044
ARG 2890.0041
LEU 2900.0035
ALA 2910.0037
TYR 2920.0026
LEU 2930.0016
ASP 2940.0021
TYR 2950.0015
TYR 2960.0015
LEU 2970.0005
ASP 2980.0016
GLY 2990.0017
ILE 3000.0021
ILE 3010.0032
ASP 3020.0037
LEU 3030.0029
PHE 3040.0036
ASN 3050.0046
CYS 3060.0051
LEU 3070.0047
THR 3080.0048
ASN 3090.0058
VAL 3100.0057
SER 3110.0061
SER 3120.0056
PHE 3130.0046
SER 3140.0044
LEU 3150.0036
VAL 3160.0041
SER 3170.0036
VAL 3180.0023
THR 3190.0017
ILE 3200.0006
GLU 3210.0015
ARG 3220.0018
VAL 3230.0012
LYS 3240.0024
ASP 3250.0026
PHE 3260.0020
SER 3270.0028
TYR 3280.0037
ASN 3290.0043
PHE 3300.0045
GLY 3310.0054
TRP 3320.0045
GLN 3330.0046
HIS 3340.0043
LEU 3350.0036
GLU 3360.0038
LEU 3370.0033
VAL 3380.0045
ASN 3390.0050
CYS 3400.0037
LYS 3410.0037
PHE 3420.0030
GLY 3430.0035
GLN 3440.0035
PHE 3450.0029
PRO 3460.0017
THR 3470.0015
LEU 3480.0010
LYS 3490.0021
LEU 3500.0027
LYS 3510.0037
SER 3520.0035
LEU 3530.0028
LYS 3540.0028
ARG 3550.0030
LEU 3560.0025
THR 3570.0035
PHE 3580.0034
THR 3590.0051
SER 3600.0062
ASN 3610.0052
LYS 3620.0060
GLY 3630.0058
GLY 3640.0057
ASN 3650.0053
ALA 3660.0053
PHE 3670.0048
SER 3680.0038
GLU 3690.0033
VAL 3700.0017
ASP 3710.0017
LEU 3720.0008
PRO 3730.0014
SER 3740.0014
LEU 3750.0008
GLU 3760.0008
PHE 3770.0021
LEU 3780.0024
ASP 3790.0038
LEU 3800.0044
SER 3810.0059
ARG 3820.0065
ASN 3830.0063
GLY 3840.0070
LEU 3850.0062
SER 3860.0066
PHE 3870.0071
LYS 3880.0076
GLY 3890.0071
CYS 3900.0062
CYS 3910.0051
SER 3920.0046
GLN 3930.0036
SER 3940.0041
ASP 3950.0040
PHE 3960.0026
GLY 3970.0019
THR 3980.0015
ILE 3990.0019
SER 4000.0010
LEU 4010.0009
LYS 4020.0010
TYR 4030.0024
LEU 4040.0034
ASP 4050.0047
LEU 4060.0058
SER 4070.0072
PHE 4080.0074
ASN 4090.0074
GLY 4100.0076
VAL 4110.0076
ILE 4120.0079
THR 4130.0084
MET 4140.0073
SER 4150.0076
SER 4160.0063
ASN 4170.0066
PHE 4180.0050
LEU 4190.0053
GLY 4200.0041
LEU 4210.0031
GLU 4220.0036
GLN 4230.0020
LEU 4240.0019
GLU 4250.0012
HIS 4260.0026
LEU 4270.0048
ASP 4280.0055
PHE 4290.0063
GLN 4300.0067
HIS 4310.0077
SER 4320.0079
ASN 4330.0086
LEU 4340.0077
LYS 4350.0083
GLN 4360.0081
MET 4370.0083
SER 4380.0093
GLU 4390.0102
PHE 4400.0089
SER 4410.0072
VAL 4420.0072
PHE 4430.0056
LEU 4440.0062
SER 4450.0054
LEU 4460.0039
ARG 4470.0043
ASN 4480.0026
LEU 4490.0020
ILE 4500.0013
TYR 4510.0026
LEU 4520.0047
ASP 4530.0053
ILE 4540.0059
SER 4550.0061
HIS 4560.0070
THR 4570.0078
HIS 4580.0090
THR 4590.0072
ARG 4600.0085
VAL 4610.0071
ALA 4620.0094
PHE 4630.0090
ASN 4640.0080
GLY 4650.0077
ILE 4660.0069
PHE 4670.0056
ASN 4680.0065
GLY 4690.0059
LEU 4700.0041
SER 4710.0043
SER 4720.0031
LEU 4730.0020
GLU 4740.0018
VAL 4750.0020
LEU 4760.0026
LYS 4770.0044
MET 4780.0048
ALA 4790.0050
GLY 4800.0057
ASN 4810.0058
SER 4820.0062
PHE 4830.0053
GLN 4840.0068
GLU 4850.0063
ASN 4860.0044
PHE 4870.0040
LEU 4880.0035
PRO 4890.0043
ASP 4900.0043
ILE 4910.0041
PHE 4920.0039
THR 4930.0053
GLU 4940.0054
LEU 4950.0038
ARG 4960.0045
ASN 4970.0038
LEU 4980.0026
THR 4990.0029
PHE 5000.0023
LEU 5010.0017
ASP 5020.0026
LEU 5030.0025
SER 5040.0029
GLN 5050.0032
CYS 5060.0030
GLN 5070.0036
LEU 5080.0027
GLU 5090.0020
GLN 5100.0019
LEU 5110.0024
SER 5120.0030
PRO 5130.0027
THR 5140.0034
ALA 5150.0030
PHE 5160.0028
ASN 5170.0039
SER 5180.0045
LEU 5190.0036
SER 5200.0046
SER 5210.0043
LEU 5220.0033
GLN 5230.0037
VAL 5240.0032
LEU 5250.0024
ASN 5260.0025
MET 5270.0021
SER 5280.0025
HIS 5290.0031
ASN 5300.0031
ASN 5310.0035
PHE 5320.0047
PHE 5330.0051
SER 5340.0049
LEU 5350.0046
ASP 5360.0044
THR 5370.0038
PHE 5380.0035
PRO 5390.0032
TYR 5400.0032
LYS 5410.0034
CYS 5420.0039
LEU 5430.0036
ASN 5440.0045
SER 5450.0042
LEU 5460.0038
GLN 5470.0036
VAL 5480.0034
LEU 5490.0032
ASP 5500.0032
TYR 5510.0032
SER 5520.0031
LEU 5530.0040
ASN 5540.0045
HIS 5550.0053
ILE 5560.0051
MET 5570.0055
THR 5580.0057
SER 5590.0058
LYS 5600.0067
LYS 5610.0067
GLN 5620.0063
GLU 5630.0053
LEU 5640.0047
GLN 5650.0043
HIS 5660.0036
PHE 5670.0034
PRO 5680.0034
SER 5690.0040
SER 5700.0038
LEU 5710.0036
ALA 5720.0029
PHE 5730.0029
LEU 5740.0029
ASN 5750.0029
LEU 5760.0028
THR 5770.0025
GLN 5780.0036
ASN 5790.0042
ASP 5800.0051
PHE 5810.0046
ALA 5820.0052
CYS 5830.0031
THR 5840.0033
CYS 5850.0026
GLU 5860.0048
HIS 5870.0048
GLN 5880.0036
SER 5890.0053
PHE 5900.0048
LEU 5910.0027
GLN 5920.0029
TRP 5930.0034
ILE 5940.0022
LYS 5950.0015
ASP 5960.0027
GLN 5970.0017
ARG 5980.0009
GLN 5990.0010
LEU 6000.0018
LEU 6010.0018
VAL 6020.0014
GLU 6030.0017
VAL 6040.0018
GLU 6050.0022
ARG 6060.0024
MET 6070.0026
GLU 6080.0040
CYS 6090.0044
ALA 6100.0066
THR 6110.0072
PRO 6120.0073
SER 6130.0105
ASP 6140.0098
LYS 6150.0067
GLN 6160.0083
GLY 6170.0071
MET 6180.0054
PRO 6190.0038
VAL 6200.0020
LEU 6210.0014
SER 6220.0037
LEU 6230.0033
ASN 6240.0049
ILE 6250.0047
THR 6260.0072
CYS 6270.0293
GLU 10.0067
ALA 20.0042
ALA 30.0028
ALA 40.0037
LYS 50.0052
MET 60.0037
GLN 70.0038
ARG 80.0045
LEU 90.0047
VAL 100.0044
LEU 110.0037
LEU 120.0021
LEU 130.0021
ALA 140.0032
ILE 150.0022
SER 160.0024
LEU 170.0043
LEU 180.0033
LEU 190.0023
TYR 200.0049
GLN 210.0041
ASP 220.0020
LEU 230.0023
PRO 240.0027
VAL 250.0049
ARG 260.0027
SER 270.0032
GLU 280.0031
PHE 290.0045
GLU 300.0046
LEU 310.0039
ASP 320.0037
ARG 330.0041
ILE 340.0043
CYS 350.0042
GLY 360.0035
TYR 370.0030
GLY 380.0034
THR 390.0042
ALA 400.0043
ARG 410.0025
CYS 420.0015
ARG 430.0009
LYS 440.0021
LYS 450.0028
CYS 460.0024
ARG 470.0023
SER 480.0025
GLN 490.0020
GLU 500.0019
TYR 510.0029
ARG 520.0036
ILE 530.0044
GLY 540.0050
ARG 550.0047
CYS 560.0035
PRO 570.0038
ASN 580.0020
THR 590.0027
TYR 600.0020
ALA 610.0023
CYS 620.0024
CYS 630.0016
LEU 640.0017
ARG 650.0014
LYS 660.0029
TRP 670.0043
ASP 680.0035
GLU 690.0038
SER 700.0037
LEU 710.0052
LEU 720.0059
ASN 730.0046
ARG 740.0045
THR 750.0061
LYS 760.0062
PRO 770.0076
GLU 780.0063
ALA 790.0082
ALA 800.0102
ALA 810.0053
LYS 820.0103
LYS 830.0073
GLU 840.0088
MET 850.0079
ASN 860.0156
LEU 870.0150
SER 880.0153
VAL 890.0149
GLY 900.0157
LEU 910.0204
GLY 920.0386
GLY 930.0631
GLY 940.0657
SER 950.0475
ASN 960.0218
LEU 970.0186
SER 980.0179
VAL 990.0159
GLY 1000.0171
LEU 1010.0181
GLY 1020.0127
GLU 1030.0109
ILE 1040.0083
GLY 1050.0130
GLY 1060.0343
GLY 1070.0239
SER 1080.0229
LYS 1090.0165
LEU 1100.0183
LEU 1110.0234
ASP 1120.0237
ILE 1130.0216
ASN 1140.0227
LEU 1150.0210
GLY 1160.0255
ARG 1170.0287
GLY 1180.0230
GLY 1190.0186
GLY 1200.0138
SER 1210.0052
MET 1220.0084
VAL 1230.0091
ASP 1240.0126
LEU 1250.0156
THR 1260.0192
PHE 1270.0147
GLY 1280.0158
GLY 1290.0112
VAL 1300.0160
GLY 1310.0546
GLY 1320.0652
GLY 1330.0604
SER 1340.0478
THR 1350.0338
PHE 1360.0143
THR 1370.0118
PHE 1380.0121
PHE 1390.0123
PRO 1400.0149
LEU 1410.0057
VAL 1420.0203
ILE 1430.0408
GLY 1440.0663
GLY 1450.0918
GLY 1460.0548
SER 1470.0382
ASP 1480.0273
ALA 1490.0127
MET 1500.0116
TYR 1510.0104
LEU 1520.0118
GLY 1530.0086
PHE 1540.0121
ALA 1550.0116
ALA 1560.0429
GLY 1570.0479
GLY 1580.0747
GLY 1590.0769
SER 1600.0806
ALA 1610.0432
GLY 1620.0301
GLY 1630.0135
GLU 1640.0101
ASN 1650.0141
HIS 1660.0165
VAL 1670.0173
ALA 1680.0156
PHE 1690.0158
GLY 1700.0165
PRO 1710.0324
GLY 1720.0399
PRO 1730.0466
GLY 1740.0371
VAL 1750.0267
ASP 1760.0214
LEU 1770.0206
THR 1780.0163
PHE 1790.0168
GLY 1800.0126
GLY 1810.0225
VAL 1820.0309
GLN 1830.0314
PHE 1840.0366
ALA 1850.0402
MET 1860.0215
VAL 1870.0094
ASN 1880.0062
ASN 1890.0162
GLY 1900.0232
PRO 1910.0255
GLY 1920.0254
PRO 1930.0206
GLY 1940.0134
GLU 1950.0066
SER 1960.0103
PHE 1970.0056
THR 1980.0026
ALA 1990.0057
GLN 2000.0085
PRO 2010.0051
ALA 2020.0061
ASP 2030.0083
MET 2040.0064
GLN 2050.0073
ALA 2060.0024
GLY 2070.0005
ILE 2080.0010
LYS 2090.0015
GLY 2100.0032
PRO 2110.0029
GLY 2120.0040
PRO 2130.0052
GLY 2140.0038
GLY 2150.0085
SER 2160.0046
ILE 2170.0033
GLN 2180.0025
VAL 2190.0052
ILE 2200.0063
ASN 2210.0076
GLY 2220.0045
SER 2230.0140
THR 2240.0114
ILE 2250.0085
GLY 2260.0209
THR 2270.0269
GLY 2280.0239
SER 2290.0212
LYS 2300.0075
LYS 2310.0080
THR 2320.0127
ILE 2330.0236
LEU 2340.0321
ILE 2350.0408
TYR 2360.0340
SER 2370.0223
ILE 2380.0287
ILE 2390.0220
GLY 2400.0338
VAL 2410.0208
LYS 2420.0123
LYS 2430.0090
GLY 2440.0108
THR 2450.0078
LEU 2460.0226
ALA 2470.0259
TRP 2480.0397
ALA 2490.0482
ARG 2500.0571
THR 2510.0551
GLY 2520.0520
PHE 2530.0257
SER 2540.0216
PRO 2550.0202
ALA 2560.0198
LYS 2570.0178
LYS 2580.0117
LEU 2590.0114
ASN 2600.0100
ALA 2610.0072
GLY 2620.0075
VAL 2630.0106
VAL 2640.0136
ARG 2650.0175
VAL 2660.0204
PHE 2670.0184
PHE 2680.0174
LEU 2690.0162
ASN 2700.0146
GLN 2710.0117
LYS 2720.0094
LYS 2730.0114
ALA 2740.0142
LYS 2750.0140
ASP 2760.0107
VAL 2770.0096
LEU 2780.0063
ARG 2790.0049
LYS 2800.0079
THR 2810.0074
SER 2820.0063
ARG 2830.0061
PRO 2840.0098
MET 2850.0104
VAL 2860.0125
ASP 2870.0080
LEU 2880.0060
THR 2890.0044
PHE 2900.0062
GLY 2910.0078
GLY 2920.0123

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.