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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 74  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0991
GLU 270.0103
PRO 280.0112
CYS 290.0105
VAL 300.0110
GLU 310.0105
VAL 320.0109
VAL 330.0099
PRO 340.0099
ASN 350.0082
ILE 360.0075
THR 370.0077
TYR 380.0079
GLN 390.0085
CYS 400.0085
MET 410.0091
GLU 420.0105
LEU 430.0108
ASN 440.0115
PHE 450.0105
TYR 460.0112
LYS 470.0102
ILE 480.0089
PRO 490.0086
ASP 500.0077
ASN 510.0083
LEU 520.0077
PRO 530.0066
PHE 540.0051
SER 550.0051
THR 560.0057
LYS 570.0045
ASN 580.0049
LEU 590.0056
ASP 600.0062
LEU 610.0069
SER 620.0064
PHE 630.0079
ASN 640.0087
PRO 650.0102
LEU 660.0097
ARG 670.0103
HIS 680.0097
LEU 690.0082
GLY 700.0080
SER 710.0068
TYR 720.0061
SER 730.0066
PHE 740.0060
PHE 750.0052
SER 760.0052
PHE 770.0045
PRO 780.0034
GLU 790.0031
LEU 800.0044
GLN 810.0047
VAL 820.0045
LEU 830.0051
ASP 840.0051
LEU 850.0059
SER 860.0057
ARG 870.0060
CYS 880.0065
GLU 890.0081
ILE 900.0084
GLN 910.0101
THR 920.0086
ILE 930.0075
GLU 940.0075
ASP 950.0070
GLY 960.0057
ALA 970.0063
TYR 980.0057
GLN 990.0054
SER 1000.0048
LEU 1010.0047
SER 1020.0046
HIS 1030.0042
LEU 1040.0048
SER 1050.0051
THR 1060.0055
LEU 1070.0051
ILE 1080.0051
LEU 1090.0055
THR 1100.0058
GLY 1110.0061
ASN 1120.0058
PRO 1130.0069
ILE 1140.0075
GLN 1150.0087
SER 1160.0091
LEU 1170.0046
ALA 1180.0052
LEU 1190.0056
GLY 1200.0060
ALA 1210.0055
PHE 1220.0048
SER 1230.0050
GLY 1240.0051
LEU 1250.0048
SER 1260.0049
SER 1270.0050
LEU 1280.0047
GLN 1290.0050
LYS 1300.0053
LEU 1310.0051
VAL 1320.0050
ALA 1330.0052
VAL 1340.0063
GLU 1350.0070
THR 1360.0062
ASN 1370.0073
LEU 1380.0060
ALA 1390.0057
SER 1400.0047
LEU 1410.0039
GLU 1420.0042
ASN 1430.0044
PHE 1440.0034
PRO 1450.0027
ILE 1460.0027
GLY 1470.0010
HIS 1480.0016
LEU 1490.0024
LYS 1500.0029
THR 1510.0038
LEU 1520.0026
LYS 1530.0032
GLU 1540.0037
LEU 1550.0037
ASN 1560.0050
VAL 1570.0041
ALA 1580.0052
HIS 1590.0071
ASN 1600.0072
LEU 1610.0083
ILE 1620.0075
GLN 1630.0078
SER 1640.0076
PHE 1650.0065
LYS 1660.0074
LEU 1670.0048
PRO 1680.0049
GLU 1690.0048
TYR 1700.0034
PHE 1710.0029
SER 1720.0032
ASN 1730.0021
LEU 1740.0011
THR 1750.0025
ASN 1760.0025
LEU 1770.0011
GLU 1780.0009
HIS 1790.0020
LEU 1800.0028
ASP 1810.0038
LEU 1820.0049
SER 1830.0048
SER 1840.0059
ASN 1850.0068
LYS 1860.0076
ILE 1870.0071
GLN 1880.0069
SER 1890.0075
ILE 1900.0077
TYR 1910.0092
CYS 1920.0088
THR 1930.0091
ASP 1940.0083
LEU 1950.0078
ARG 1960.0084
VAL 1970.0062
LEU 1980.0060
HIS 1990.0069
GLN 2000.0062
MET 2010.0052
PRO 2020.0056
LEU 2030.0048
LEU 2040.0042
ASN 2050.0035
LEU 2060.0039
SER 2070.0062
LEU 2080.0062
ASP 2090.0059
LEU 2100.0058
SER 2110.0054
LEU 2120.0068
ASN 2130.0062
PRO 2140.0056
MET 2150.0055
ASN 2160.0057
PHE 2170.0066
ILE 2180.0074
GLN 2190.0081
PRO 2200.0084
GLY 2210.0096
ALA 2220.0088
PHE 2230.0092
LYS 2240.0097
GLU 2250.0108
ILE 2260.0107
ARG 2270.0098
LEU 2280.0095
HIS 2290.0097
LYS 2300.0088
LEU 2310.0080
THR 2320.0093
LEU 2330.0068
ARG 2340.0079
ASN 2350.0078
ASN 2360.0058
PHE 2370.0062
ASP 2380.0082
SER 2390.0087
LEU 2400.0085
ASN 2410.0088
VAL 2420.0055
MET 2430.0051
LYS 2440.0065
THR 2450.0068
CYS 2460.0063
ILE 2470.0065
GLN 2480.0076
GLY 2490.0080
LEU 2500.0090
ALA 2510.0103
GLY 2520.0114
LEU 2530.0111
GLU 2540.0117
VAL 2550.0108
HIS 2560.0112
ARG 2570.0113
LEU 2580.0089
VAL 2590.0081
LEU 2600.0059
GLY 2610.0058
GLU 2620.0099
PHE 2630.0150
ARG 2640.0189
ASN 2650.0215
GLU 2660.0174
GLY 2670.0158
ASN 2680.0136
LEU 2690.0114
GLU 2700.0141
LYS 2710.0125
PHE 2720.0088
ASP 2730.0102
LYS 2740.0105
SER 2750.0105
ALA 2760.0075
LEU 2770.0070
GLU 2780.0097
GLY 2790.0099
LEU 2800.0099
CYS 2810.0125
ASN 2820.0117
LEU 2830.0115
THR 2840.0123
ILE 2850.0111
GLU 2860.0120
GLU 2870.0112
PHE 2880.0088
ARG 2890.0081
LEU 2900.0062
ALA 2910.0077
TYR 2920.0102
LEU 2930.0088
ASP 2940.0121
TYR 2950.0113
TYR 2960.0116
LEU 2970.0078
ASP 2980.0098
GLY 2990.0083
ILE 3000.0070
ILE 3010.0098
ASP 3020.0106
LEU 3030.0078
PHE 3040.0077
ASN 3050.0108
CYS 3060.0116
LEU 3070.0096
THR 3080.0100
ASN 3090.0120
VAL 3100.0112
SER 3110.0119
SER 3120.0106
PHE 3130.0083
SER 3140.0078
LEU 3150.0062
VAL 3160.0076
SER 3170.0089
VAL 3180.0063
THR 3190.0068
ILE 3200.0053
GLU 3210.0072
ARG 3220.0069
VAL 3230.0050
LYS 3240.0062
ASP 3250.0067
PHE 3260.0059
SER 3270.0072
TYR 3280.0085
ASN 3290.0091
PHE 3300.0091
GLY 3310.0103
TRP 3320.0083
GLN 3330.0079
HIS 3340.0074
LEU 3350.0066
GLU 3360.0064
LEU 3370.0048
VAL 3380.0061
ASN 3390.0063
CYS 3400.0043
LYS 3410.0047
PHE 3420.0035
GLY 3430.0043
GLN 3440.0037
PHE 3450.0030
PRO 3460.0032
THR 3470.0041
LEU 3480.0045
LYS 3490.0056
LEU 3500.0062
LYS 3510.0068
SER 3520.0068
LEU 3530.0057
LYS 3540.0043
ARG 3550.0045
LEU 3560.0046
THR 3570.0039
PHE 3580.0031
THR 3590.0032
SER 3600.0030
ASN 3610.0023
LYS 3620.0025
GLY 3630.0019
GLY 3640.0018
ASN 3650.0014
ALA 3660.0018
PHE 3670.0022
SER 3680.0029
GLU 3690.0030
VAL 3700.0033
ASP 3710.0038
LEU 3720.0058
PRO 3730.0063
SER 3740.0043
LEU 3750.0012
GLU 3760.0026
PHE 3770.0035
LEU 3780.0026
ASP 3790.0032
LEU 3800.0026
SER 3810.0032
ARG 3820.0025
ASN 3830.0024
GLY 3840.0029
LEU 3850.0025
SER 3860.0029
PHE 3870.0028
LYS 3880.0025
GLY 3890.0018
CYS 3900.0016
CYS 3910.0026
SER 3920.0023
GLN 3930.0026
SER 3940.0026
ASP 3950.0012
PHE 3960.0005
GLY 3970.0027
THR 3980.0021
ILE 3990.0052
SER 4000.0051
LEU 4010.0049
LYS 4020.0087
TYR 4030.0082
LEU 4040.0062
ASP 4050.0068
LEU 4060.0054
SER 4070.0061
PHE 4080.0066
ASN 4090.0057
GLY 4100.0056
VAL 4110.0051
ILE 4120.0040
THR 4130.0031
MET 4140.0022
SER 4150.0024
SER 4160.0032
ASN 4170.0047
PHE 4180.0052
LEU 4190.0067
GLY 4200.0078
LEU 4210.0072
GLU 4220.0114
GLN 4230.0124
LEU 4240.0112
GLU 4250.0139
HIS 4260.0132
LEU 4270.0088
ASP 4280.0088
PHE 4290.0076
GLN 4300.0086
HIS 4310.0087
SER 4320.0070
ASN 4330.0064
LEU 4340.0050
LYS 4350.0043
GLN 4360.0035
MET 4370.0032
SER 4380.0039
GLU 4390.0053
PHE 4400.0056
SER 4410.0060
VAL 4420.0048
PHE 4430.0072
LEU 4440.0089
SER 4450.0108
LEU 4460.0114
ARG 4470.0157
ASN 4480.0171
LEU 4490.0147
ILE 4500.0175
TYR 4510.0162
LEU 4520.0106
ASP 4530.0106
ILE 4540.0087
SER 4550.0099
HIS 4560.0101
THR 4570.0071
HIS 4580.0072
THR 4590.0055
ARG 4600.0059
VAL 4610.0046
ALA 4620.0065
PHE 4630.0062
ASN 4640.0065
GLY 4650.0077
ILE 4660.0053
PHE 4670.0075
ASN 4680.0103
GLY 4690.0132
LEU 4700.0132
SER 4710.0164
SER 4720.0190
LEU 4730.0156
GLU 4740.0175
VAL 4750.0161
LEU 4760.0119
LYS 4770.0107
MET 4780.0089
ALA 4790.0107
GLY 4800.0113
ASN 4810.0090
SER 4820.0090
PHE 4830.0072
GLN 4840.0095
GLU 4850.0128
ASN 4860.0108
PHE 4870.0089
LEU 4880.0055
PRO 4890.0067
ASP 4900.0078
ILE 4910.0068
PHE 4920.0080
THR 4930.0116
GLU 4940.0141
LEU 4950.0128
ARG 4960.0152
ASN 4970.0173
LEU 4980.0138
THR 4990.0152
PHE 5000.0139
LEU 5010.0101
ASP 5020.0098
LEU 5030.0086
SER 5040.0107
GLN 5050.0118
CYS 5060.0097
GLN 5070.0116
LEU 5080.0092
GLU 5090.0106
GLN 5100.0090
LEU 5110.0066
SER 5120.0084
PRO 5130.0089
THR 5140.0090
ALA 5150.0063
PHE 5160.0059
ASN 5170.0095
SER 5180.0118
LEU 5190.0102
SER 5200.0120
SER 5210.0132
LEU 5220.0097
GLN 5230.0110
VAL 5240.0102
LEU 5250.0076
ASN 5260.0095
MET 5270.0080
SER 5280.0100
HIS 5290.0116
ASN 5300.0105
ASN 5310.0112
PHE 5320.0089
PHE 5330.0093
SER 5340.0078
LEU 5350.0063
ASP 5360.0057
THR 5370.0055
PHE 5380.0063
PRO 5390.0052
TYR 5400.0046
LYS 5410.0059
CYS 5420.0082
LEU 5430.0068
ASN 5440.0088
SER 5450.0091
LEU 5460.0066
GLN 5470.0067
VAL 5480.0068
LEU 5490.0059
ASP 5500.0077
TYR 5510.0084
SER 5520.0085
LEU 5530.0097
ASN 5540.0094
HIS 5550.0094
ILE 5560.0078
MET 5570.0066
THR 5580.0060
SER 5590.0050
LYS 5600.0055
LYS 5610.0047
GLN 5620.0060
GLU 5630.0056
LEU 5640.0054
GLN 5650.0065
HIS 5660.0060
PHE 5670.0055
PRO 5680.0057
SER 5690.0061
SER 5700.0060
LEU 5710.0049
ALA 5720.0056
PHE 5730.0059
LEU 5740.0057
ASN 5750.0067
LEU 5760.0070
THR 5770.0057
GLN 5780.0056
ASN 5790.0053
ASP 5800.0051
PHE 5810.0040
ALA 5820.0035
CYS 5830.0050
THR 5840.0070
CYS 5850.0078
GLU 5860.0083
HIS 5870.0051
GLN 5880.0043
SER 5890.0052
PHE 5900.0046
LEU 5910.0023
GLN 5920.0027
TRP 5930.0044
ILE 5940.0054
LYS 5950.0060
ASP 5960.0063
GLN 5970.0072
ARG 5980.0075
GLN 5990.0091
LEU 6000.0083
LEU 6010.0067
VAL 6020.0095
GLU 6030.0079
VAL 6040.0083
GLU 6050.0078
ARG 6060.0051
MET 6070.0072
GLU 6080.0062
CYS 6090.0049
ALA 6100.0045
THR 6110.0066
PRO 6120.0127
SER 6130.0159
ASP 6140.0188
LYS 6150.0140
GLN 6160.0113
GLY 6170.0110
MET 6180.0119
PRO 6190.0105
VAL 6200.0067
LEU 6210.0094
SER 6220.0176
LEU 6230.0131
ASN 6240.0142
ILE 6250.0097
THR 6260.0166
CYS 6270.0991
GLU 10.0339
ALA 20.0139
ALA 30.0187
ALA 40.0140
LYS 50.0105
MET 60.0199
GLN 70.0181
ARG 80.0142
LEU 90.0218
VAL 100.0252
LEU 110.0187
LEU 120.0167
LEU 130.0090
ALA 140.0074
ILE 150.0071
SER 160.0191
LEU 170.0290
LEU 180.0200
LEU 190.0149
TYR 200.0379
GLN 210.0363
ASP 220.0191
LEU 230.0180
PRO 240.0232
VAL 250.0410
ARG 260.0125
SER 270.0079
GLU 280.0039
PHE 290.0055
GLU 300.0081
LEU 310.0054
ASP 320.0054
ARG 330.0080
ILE 340.0086
CYS 350.0094
GLY 360.0099
TYR 370.0092
GLY 380.0095
THR 390.0127
ALA 400.0109
ARG 410.0085
CYS 420.0083
ARG 430.0092
LYS 440.0120
LYS 450.0130
CYS 460.0091
ARG 470.0089
SER 480.0100
GLN 490.0099
GLU 500.0100
TYR 510.0120
ARG 520.0109
ILE 530.0111
GLY 540.0103
ARG 550.0102
CYS 560.0099
PRO 570.0124
ASN 580.0138
THR 590.0131
TYR 600.0122
ALA 610.0095
CYS 620.0100
CYS 630.0096
LEU 640.0106
ARG 650.0104
LYS 660.0111
TRP 670.0115
ASP 680.0095
GLU 690.0084
SER 700.0086
LEU 710.0091
LEU 720.0100
ASN 730.0085
ARG 740.0097
THR 750.0118
LYS 760.0083
PRO 770.0089
GLU 780.0083
ALA 790.0081
ALA 800.0103
ALA 810.0186
LYS 820.0196
LYS 830.0143
GLU 840.0134
MET 850.0106
ASN 860.0132
LEU 870.0116
SER 880.0108
VAL 890.0081
GLY 900.0085
LEU 910.0083
GLY 920.0234
GLY 930.0440
GLY 940.0470
SER 950.0316
ASN 960.0131
LEU 970.0078
SER 980.0098
VAL 990.0066
GLY 1000.0102
LEU 1010.0103
GLY 1020.0150
GLU 1030.0158
ILE 1040.0133
GLY 1050.0131
GLY 1060.0196
GLY 1070.0193
SER 1080.0208
LYS 1090.0168
LEU 1100.0180
LEU 1110.0176
ASP 1120.0160
ILE 1130.0110
ASN 1140.0124
LEU 1150.0090
GLY 1160.0204
ARG 1170.0252
GLY 1180.0274
GLY 1190.0189
GLY 1200.0058
SER 1210.0055
MET 1220.0064
VAL 1230.0059
ASP 1240.0067
LEU 1250.0065
THR 1260.0081
PHE 1270.0074
GLY 1280.0121
GLY 1290.0148
VAL 1300.0166
GLY 1310.0240
GLY 1320.0194
GLY 1330.0114
SER 1340.0141
THR 1350.0114
PHE 1360.0114
THR 1370.0111
PHE 1380.0090
PHE 1390.0090
PRO 1400.0067
LEU 1410.0066
VAL 1420.0132
ILE 1430.0171
GLY 1440.0273
GLY 1450.0326
GLY 1460.0073
SER 1470.0049
ASP 1480.0068
ALA 1490.0075
MET 1500.0077
TYR 1510.0069
LEU 1520.0082
GLY 1530.0083
PHE 1540.0114
ALA 1550.0128
ALA 1560.0227
GLY 1570.0212
GLY 1580.0199
GLY 1590.0125
SER 1600.0100
ALA 1610.0069
GLY 1620.0089
GLY 1630.0099
GLU 1640.0094
ASN 1650.0074
HIS 1660.0074
VAL 1670.0067
ALA 1680.0077
PHE 1690.0076
GLY 1700.0088
PRO 1710.0114
GLY 1720.0139
PRO 1730.0182
GLY 1740.0104
VAL 1750.0041
ASP 1760.0039
LEU 1770.0035
THR 1780.0038
PHE 1790.0037
GLY 1800.0040
GLY 1810.0050
VAL 1820.0037
GLN 1830.0021
PHE 1840.0016
ALA 1850.0021
MET 1860.0074
VAL 1870.0122
ASN 1880.0105
ASN 1890.0090
GLY 1900.0096
PRO 1910.0134
GLY 1920.0106
PRO 1930.0074
GLY 1940.0087
GLU 1950.0119
SER 1960.0147
PHE 1970.0154
THR 1980.0075
ALA 1990.0072
GLN 2000.0094
PRO 2010.0073
ALA 2020.0082
ASP 2030.0069
MET 2040.0128
GLN 2050.0146
ALA 2060.0137
GLY 2070.0144
ILE 2080.0089
LYS 2090.0106
GLY 2100.0194
PRO 2110.0110
GLY 2120.0058
PRO 2130.0069
GLY 2140.0129
GLY 2150.0146
SER 2160.0079
ILE 2170.0102
GLN 2180.0122
VAL 2190.0157
ILE 2200.0207
ASN 2210.0231
GLY 2220.0171
SER 2230.0068
THR 2240.0230
ILE 2250.0257
GLY 2260.0160
THR 2270.0114
GLY 2280.0207
SER 2290.0336
LYS 2300.0204
LYS 2310.0121
THR 2320.0055
ILE 2330.0065
LEU 2340.0136
ILE 2350.0154
TYR 2360.0239
SER 2370.0243
ILE 2380.0205
ILE 2390.0145
GLY 2400.0125
VAL 2410.0045
LYS 2420.0012
LYS 2430.0039
GLY 2440.0081
THR 2450.0075
LEU 2460.0115
ALA 2470.0045
TRP 2480.0046
ALA 2490.0055
ARG 2500.0076
THR 2510.0225
GLY 2520.0150
PHE 2530.0147
SER 2540.0145
PRO 2550.0043
ALA 2560.0049
LYS 2570.0028
LYS 2580.0081
LEU 2590.0208
ASN 2600.0293
ALA 2610.0394
GLY 2620.0288
VAL 2630.0244
VAL 2640.0303
ARG 2650.0246
VAL 2660.0196
PHE 2670.0205
PHE 2680.0205
LEU 2690.0228
ASN 2700.0283
GLN 2710.0152
LYS 2720.0157
LYS 2730.0221
ALA 2740.0157
LYS 2750.0101
ASP 2760.0132
VAL 2770.0118
LEU 2780.0052
ARG 2790.0089
LYS 2800.0138
THR 2810.0087
SER 2820.0054
ARG 2830.0037
PRO 2840.0076
MET 2850.0131
VAL 2860.0213
ASP 2870.0233
LEU 2880.0179
THR 2890.0187
PHE 2900.0138
GLY 2910.0205
GLY 2920.0201

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.