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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 75  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0619
GLU 270.0053
PRO 280.0030
CYS 290.0018
VAL 300.0042
GLU 310.0067
VAL 320.0091
VAL 330.0105
PRO 340.0101
ASN 350.0085
ILE 360.0079
THR 370.0065
TYR 380.0039
GLN 390.0036
CYS 400.0020
MET 410.0046
GLU 420.0059
LEU 430.0049
ASN 440.0062
PHE 450.0050
TYR 460.0062
LYS 470.0061
ILE 480.0038
PRO 490.0027
ASP 500.0043
ASN 510.0047
LEU 520.0037
PRO 530.0048
PHE 540.0039
SER 550.0048
THR 560.0037
LYS 570.0041
ASN 580.0041
LEU 590.0028
ASP 600.0037
LEU 610.0038
SER 620.0051
PHE 630.0061
ASN 640.0055
PRO 650.0062
LEU 660.0053
ARG 670.0047
HIS 680.0042
LEU 690.0037
GLY 700.0033
SER 710.0028
TYR 720.0028
SER 730.0030
PHE 740.0019
PHE 750.0014
SER 760.0013
PHE 770.0004
PRO 780.0005
GLU 790.0016
LEU 800.0019
GLN 810.0033
VAL 820.0036
LEU 830.0035
ASP 840.0038
LEU 850.0040
SER 860.0046
ARG 870.0045
CYS 880.0043
GLU 890.0044
ILE 900.0041
GLN 910.0041
THR 920.0036
ILE 930.0034
GLU 940.0030
ASP 950.0026
GLY 960.0027
ALA 970.0031
TYR 980.0029
GLN 990.0027
SER 1000.0022
LEU 1010.0024
SER 1020.0029
HIS 1030.0029
LEU 1040.0028
SER 1050.0028
THR 1060.0027
LEU 1070.0031
ILE 1080.0031
LEU 1090.0030
THR 1100.0032
GLY 1110.0032
ASN 1120.0033
PRO 1130.0030
ILE 1140.0029
GLN 1150.0027
SER 1160.0028
LEU 1170.0027
ALA 1180.0027
LEU 1190.0026
GLY 1200.0028
ALA 1210.0029
PHE 1220.0028
SER 1230.0031
GLY 1240.0032
LEU 1250.0029
SER 1260.0032
SER 1270.0027
LEU 1280.0021
GLN 1290.0019
LYS 1300.0019
LEU 1310.0015
VAL 1320.0022
ALA 1330.0019
VAL 1340.0021
GLU 1350.0019
THR 1360.0017
ASN 1370.0026
LEU 1380.0027
ALA 1390.0036
SER 1400.0037
LEU 1410.0032
GLU 1420.0037
ASN 1430.0035
PHE 1440.0029
PRO 1450.0028
ILE 1460.0026
GLY 1470.0028
HIS 1480.0028
LEU 1490.0023
LYS 1500.0023
THR 1510.0023
LEU 1520.0014
LYS 1530.0020
GLU 1540.0023
LEU 1550.0020
ASN 1560.0024
VAL 1570.0024
ALA 1580.0032
HIS 1590.0036
ASN 1600.0034
LEU 1610.0040
ILE 1620.0044
GLN 1630.0050
SER 1640.0046
PHE 1650.0041
LYS 1660.0038
LEU 1670.0037
PRO 1680.0036
GLU 1690.0033
TYR 1700.0030
PHE 1710.0027
SER 1720.0025
ASN 1730.0024
LEU 1740.0021
THR 1750.0020
ASN 1760.0021
LEU 1770.0020
GLU 1780.0025
HIS 1790.0028
LEU 1800.0030
ASP 1810.0034
LEU 1820.0038
SER 1830.0043
SER 1840.0048
ASN 1850.0046
LYS 1860.0051
ILE 1870.0045
GLN 1880.0048
SER 1890.0046
ILE 1900.0042
TYR 1910.0041
CYS 1920.0038
THR 1930.0038
ASP 1940.0040
LEU 1950.0035
ARG 1960.0032
VAL 1970.0031
LEU 1980.0029
HIS 1990.0027
GLN 2000.0027
MET 2010.0026
PRO 2020.0025
LEU 2030.0025
LEU 2040.0025
ASN 2050.0026
LEU 2060.0028
SER 2070.0033
LEU 2080.0034
ASP 2090.0037
LEU 2100.0038
SER 2110.0041
LEU 2120.0043
ASN 2130.0042
PRO 2140.0045
MET 2150.0043
ASN 2160.0045
PHE 2170.0044
ILE 2180.0039
GLN 2190.0034
PRO 2200.0029
GLY 2210.0026
ALA 2220.0029
PHE 2230.0028
LYS 2240.0023
GLU 2250.0019
ILE 2260.0023
ARG 2270.0021
LEU 2280.0024
HIS 2290.0025
LYS 2300.0028
LEU 2310.0028
THR 2320.0031
LEU 2330.0032
ARG 2340.0032
ASN 2350.0032
ASN 2360.0033
PHE 2370.0036
ASP 2380.0033
SER 2390.0031
LEU 2400.0030
ASN 2410.0030
VAL 2420.0035
MET 2430.0037
LYS 2440.0034
THR 2450.0034
CYS 2460.0039
ILE 2470.0037
GLN 2480.0031
GLY 2490.0032
LEU 2500.0034
ALA 2510.0029
GLY 2520.0024
LEU 2530.0025
GLU 2540.0025
VAL 2550.0027
HIS 2560.0028
ARG 2570.0031
LEU 2580.0029
VAL 2590.0030
LEU 2600.0028
GLY 2610.0029
GLU 2620.0022
PHE 2630.0021
ARG 2640.0019
ASN 2650.0018
GLU 2660.0020
GLY 2670.0020
ASN 2680.0019
LEU 2690.0021
GLU 2700.0017
LYS 2710.0019
PHE 2720.0023
ASP 2730.0024
LYS 2740.0030
SER 2750.0033
ALA 2760.0033
LEU 2770.0034
GLU 2780.0035
GLY 2790.0036
LEU 2800.0038
CYS 2810.0039
ASN 2820.0032
LEU 2830.0031
THR 2840.0031
ILE 2850.0034
GLU 2860.0034
GLU 2870.0033
PHE 2880.0032
ARG 2890.0030
LEU 2900.0028
ALA 2910.0028
TYR 2920.0017
LEU 2930.0013
ASP 2940.0010
TYR 2950.0007
TYR 2960.0006
LEU 2970.0006
ASP 2980.0015
GLY 2990.0018
ILE 3000.0021
ILE 3010.0031
ASP 3020.0034
LEU 3030.0029
PHE 3040.0032
ASN 3050.0039
CYS 3060.0045
LEU 3070.0037
THR 3080.0036
ASN 3090.0043
VAL 3100.0041
SER 3110.0041
SER 3120.0037
PHE 3130.0031
SER 3140.0030
LEU 3150.0025
VAL 3160.0031
SER 3170.0030
VAL 3180.0018
THR 3190.0014
ILE 3200.0008
GLU 3210.0019
ARG 3220.0025
VAL 3230.0021
LYS 3240.0033
ASP 3250.0029
PHE 3260.0021
SER 3270.0031
TYR 3280.0036
ASN 3290.0040
PHE 3300.0037
GLY 3310.0044
TRP 3320.0032
GLN 3330.0032
HIS 3340.0029
LEU 3350.0021
GLU 3360.0026
LEU 3370.0027
VAL 3380.0043
ASN 3390.0052
CYS 3400.0040
LYS 3410.0044
PHE 3420.0041
GLY 3430.0049
GLN 3440.0050
PHE 3450.0042
PRO 3460.0029
THR 3470.0031
LEU 3480.0020
LYS 3490.0028
LEU 3500.0026
LYS 3510.0036
SER 3520.0031
LEU 3530.0020
LYS 3540.0022
ARG 3550.0022
LEU 3560.0015
THR 3570.0033
PHE 3580.0039
THR 3590.0057
SER 3600.0071
ASN 3610.0062
LYS 3620.0072
GLY 3630.0071
GLY 3640.0071
ASN 3650.0066
ALA 3660.0066
PHE 3670.0060
SER 3680.0052
GLU 3690.0045
VAL 3700.0027
ASP 3710.0025
LEU 3720.0022
PRO 3730.0028
SER 3740.0024
LEU 3750.0010
GLU 3760.0015
PHE 3770.0024
LEU 3780.0027
ASP 3790.0045
LEU 3800.0053
SER 3810.0070
ARG 3820.0074
ASN 3830.0074
GLY 3840.0078
LEU 3850.0073
SER 3860.0074
PHE 3870.0078
LYS 3880.0084
GLY 3890.0077
CYS 3900.0064
CYS 3910.0049
SER 3920.0047
GLN 3930.0038
SER 3940.0047
ASP 3950.0046
PHE 3960.0030
GLY 3970.0027
THR 3980.0015
ILE 3990.0017
SER 4000.0012
LEU 4010.0005
LYS 4020.0016
TYR 4030.0030
LEU 4040.0036
ASP 4050.0055
LEU 4060.0066
SER 4070.0082
PHE 4080.0085
ASN 4090.0086
GLY 4100.0087
VAL 4110.0086
ILE 4120.0088
THR 4130.0092
MET 4140.0077
SER 4150.0081
SER 4160.0063
ASN 4170.0067
PHE 4180.0047
LEU 4190.0056
GLY 4200.0044
LEU 4210.0025
GLU 4220.0034
GLN 4230.0024
LEU 4240.0006
GLU 4250.0023
HIS 4260.0035
LEU 4270.0051
ASP 4280.0061
PHE 4290.0069
GLN 4300.0076
HIS 4310.0089
SER 4320.0094
ASN 4330.0101
LEU 4340.0088
LYS 4350.0095
GLN 4360.0092
MET 4370.0095
SER 4380.0112
GLU 4390.0122
PHE 4400.0104
SER 4410.0082
VAL 4420.0076
PHE 4430.0053
LEU 4440.0066
SER 4450.0057
LEU 4460.0034
ARG 4470.0054
ASN 4480.0041
LEU 4490.0017
ILE 4500.0033
TYR 4510.0039
LEU 4520.0049
ASP 4530.0060
ILE 4540.0065
SER 4550.0071
HIS 4560.0084
THR 4570.0101
HIS 4580.0117
THR 4590.0093
ARG 4600.0110
VAL 4610.0094
ALA 4620.0125
PHE 4630.0117
ASN 4640.0105
GLY 4650.0097
ILE 4660.0081
PHE 4670.0060
ASN 4680.0076
GLY 4690.0070
LEU 4700.0045
SER 4710.0061
SER 4720.0056
LEU 4730.0030
GLU 4740.0041
VAL 4750.0037
LEU 4760.0028
LYS 4770.0052
MET 4780.0058
ALA 4790.0068
GLY 4800.0081
ASN 4810.0079
SER 4820.0093
PHE 4830.0084
GLN 4840.0109
GLU 4850.0112
ASN 4860.0084
PHE 4870.0072
LEU 4880.0057
PRO 4890.0067
ASP 4900.0064
ILE 4910.0058
PHE 4920.0051
THR 4930.0073
GLU 4940.0075
LEU 4950.0052
ARG 4960.0069
ASN 4970.0064
LEU 4980.0042
THR 4990.0052
PHE 5000.0041
LEU 5010.0025
ASP 5020.0038
LEU 5030.0040
SER 5040.0048
GLN 5050.0056
CYS 5060.0051
GLN 5070.0065
LEU 5080.0046
GLU 5090.0042
GLN 5100.0032
LEU 5110.0028
SER 5120.0050
PRO 5130.0041
THR 5140.0050
ALA 5150.0043
PHE 5160.0035
ASN 5170.0053
SER 5180.0061
LEU 5190.0049
SER 5200.0065
SER 5210.0064
LEU 5220.0045
GLN 5230.0053
VAL 5240.0046
LEU 5250.0032
ASN 5260.0039
MET 5270.0031
SER 5280.0037
HIS 5290.0041
ASN 5300.0040
ASN 5310.0043
PHE 5320.0045
PHE 5330.0048
SER 5340.0047
LEU 5350.0046
ASP 5360.0042
THR 5370.0039
PHE 5380.0033
PRO 5390.0029
TYR 5400.0030
LYS 5410.0032
CYS 5420.0042
LEU 5430.0041
ASN 5440.0054
SER 5450.0054
LEU 5460.0047
GLN 5470.0046
VAL 5480.0044
LEU 5490.0038
ASP 5500.0040
TYR 5510.0039
SER 5520.0035
LEU 5530.0040
ASN 5540.0042
HIS 5550.0050
ILE 5560.0050
MET 5570.0055
THR 5580.0058
SER 5590.0060
LYS 5600.0069
LYS 5610.0071
GLN 5620.0069
GLU 5630.0058
LEU 5640.0052
GLN 5650.0049
HIS 5660.0041
PHE 5670.0037
PRO 5680.0036
SER 5690.0045
SER 5700.0044
LEU 5710.0043
ALA 5720.0036
PHE 5730.0035
LEU 5740.0034
ASN 5750.0034
LEU 5760.0033
THR 5770.0026
GLN 5780.0033
ASN 5790.0041
ASP 5800.0050
PHE 5810.0048
ALA 5820.0065
CYS 5830.0047
THR 5840.0055
CYS 5850.0044
GLU 5860.0065
HIS 5870.0057
GLN 5880.0041
SER 5890.0057
PHE 5900.0054
LEU 5910.0033
GLN 5920.0034
TRP 5930.0043
ILE 5940.0029
LYS 5950.0024
ASP 5960.0040
GLN 5970.0030
ARG 5980.0019
GLN 5990.0023
LEU 6000.0028
LEU 6010.0020
VAL 6020.0012
GLU 6030.0002
VAL 6040.0010
GLU 6050.0019
ARG 6060.0019
MET 6070.0019
GLU 6080.0040
CYS 6090.0051
ALA 6100.0076
THR 6110.0090
PRO 6120.0105
SER 6130.0140
ASP 6140.0133
LYS 6150.0093
GLN 6160.0102
GLY 6170.0081
MET 6180.0064
PRO 6190.0040
VAL 6200.0020
LEU 6210.0019
SER 6220.0037
LEU 6230.0033
ASN 6240.0046
ILE 6250.0037
THR 6260.0054
CYS 6270.0190
GLU 10.0102
ALA 20.0050
ALA 30.0081
ALA 40.0083
LYS 50.0030
MET 60.0066
GLN 70.0074
ARG 80.0062
LEU 90.0068
VAL 100.0085
LEU 110.0058
LEU 120.0065
LEU 130.0053
ALA 140.0037
ILE 150.0044
SER 160.0061
LEU 170.0075
LEU 180.0048
LEU 190.0043
TYR 200.0104
GLN 210.0104
ASP 220.0057
LEU 230.0049
PRO 240.0066
VAL 250.0115
ARG 260.0045
SER 270.0037
GLU 280.0040
PHE 290.0036
GLU 300.0030
LEU 310.0028
ASP 320.0027
ARG 330.0028
ILE 340.0028
CYS 350.0028
GLY 360.0026
TYR 370.0022
GLY 380.0019
THR 390.0020
ALA 400.0025
ARG 410.0015
CYS 420.0018
ARG 430.0028
LYS 440.0041
LYS 450.0043
CYS 460.0026
ARG 470.0027
SER 480.0029
GLN 490.0026
GLU 500.0023
TYR 510.0030
ARG 520.0034
ILE 530.0030
GLY 540.0043
ARG 550.0047
CYS 560.0037
PRO 570.0042
ASN 580.0036
THR 590.0051
TYR 600.0042
ALA 610.0027
CYS 620.0019
CYS 630.0019
LEU 640.0015
ARG 650.0022
LYS 660.0045
TRP 670.0055
ASP 680.0044
GLU 690.0047
SER 700.0042
LEU 710.0055
LEU 720.0057
ASN 730.0039
ARG 740.0036
THR 750.0048
LYS 760.0026
PRO 770.0052
GLU 780.0051
ALA 790.0100
ALA 800.0121
ALA 810.0273
LYS 820.0285
LYS 830.0218
GLU 840.0205
MET 850.0157
ASN 860.0197
LEU 870.0156
SER 880.0162
VAL 890.0117
GLY 900.0131
LEU 910.0110
GLY 920.0252
GLY 930.0511
GLY 940.0619
SER 950.0457
ASN 960.0252
LEU 970.0183
SER 980.0202
VAL 990.0129
GLY 1000.0172
LEU 1010.0177
GLY 1020.0184
GLU 1030.0183
ILE 1040.0104
GLY 1050.0156
GLY 1060.0411
GLY 1070.0311
SER 1080.0252
LYS 1090.0119
LEU 1100.0043
LEU 1110.0054
ASP 1120.0129
ILE 1130.0096
ASN 1140.0185
LEU 1150.0155
GLY 1160.0257
ARG 1170.0475
GLY 1180.0566
GLY 1190.0524
GLY 1200.0336
SER 1210.0133
MET 1220.0121
VAL 1230.0089
ASP 1240.0101
LEU 1250.0108
THR 1260.0137
PHE 1270.0114
GLY 1280.0147
GLY 1290.0130
VAL 1300.0139
GLY 1310.0324
GLY 1320.0427
GLY 1330.0421
SER 1340.0356
THR 1350.0288
PHE 1360.0108
THR 1370.0090
PHE 1380.0075
PHE 1390.0076
PRO 1400.0094
LEU 1410.0090
VAL 1420.0104
ILE 1430.0128
GLY 1440.0188
GLY 1450.0318
GLY 1460.0483
SER 1470.0393
ASP 1480.0290
ALA 1490.0202
MET 1500.0077
TYR 1510.0043
LEU 1520.0044
GLY 1530.0039
PHE 1540.0057
ALA 1550.0067
ALA 1560.0339
GLY 1570.0418
GLY 1580.0607
GLY 1590.0600
SER 1600.0584
ALA 1610.0325
GLY 1620.0205
GLY 1630.0094
GLU 1640.0103
ASN 1650.0106
HIS 1660.0128
VAL 1670.0132
ALA 1680.0120
PHE 1690.0115
GLY 1700.0123
PRO 1710.0371
GLY 1720.0495
PRO 1730.0593
GLY 1740.0410
VAL 1750.0214
ASP 1760.0140
LEU 1770.0137
THR 1780.0113
PHE 1790.0116
GLY 1800.0095
GLY 1810.0194
VAL 1820.0231
GLN 1830.0221
PHE 1840.0244
ALA 1850.0258
MET 1860.0100
VAL 1870.0060
ASN 1880.0034
ASN 1890.0130
GLY 1900.0091
PRO 1910.0165
GLY 1920.0140
PRO 1930.0107
GLY 1940.0047
GLU 1950.0046
SER 1960.0253
PHE 1970.0117
THR 1980.0123
ALA 1990.0137
GLN 2000.0097
PRO 2010.0121
ALA 2020.0082
ASP 2030.0125
MET 2040.0103
GLN 2050.0055
ALA 2060.0200
GLY 2070.0129
ILE 2080.0087
LYS 2090.0010
GLY 2100.0071
PRO 2110.0089
GLY 2120.0100
PRO 2130.0070
GLY 2140.0152
GLY 2150.0143
SER 2160.0057
ILE 2170.0072
GLN 2180.0041
VAL 2190.0168
ILE 2200.0123
ASN 2210.0127
GLY 2220.0152
SER 2230.0199
THR 2240.0223
ILE 2250.0164
GLY 2260.0299
THR 2270.0322
GLY 2280.0237
SER 2290.0182
LYS 2300.0087
LYS 2310.0132
THR 2320.0190
ILE 2330.0268
LEU 2340.0337
ILE 2350.0422
TYR 2360.0405
SER 2370.0380
ILE 2380.0430
ILE 2390.0338
GLY 2400.0445
VAL 2410.0277
LYS 2420.0165
LYS 2430.0133
GLY 2440.0163
THR 2450.0116
LEU 2460.0269
ALA 2470.0290
TRP 2480.0411
ALA 2490.0522
ARG 2500.0578
THR 2510.0538
GLY 2520.0537
PHE 2530.0270
SER 2540.0278
PRO 2550.0167
ALA 2560.0143
LYS 2570.0135
LYS 2580.0103
LEU 2590.0062
ASN 2600.0040
ALA 2610.0047
GLY 2620.0049
VAL 2630.0105
VAL 2640.0108
ARG 2650.0127
VAL 2660.0224
PHE 2670.0206
PHE 2680.0228
LEU 2690.0204
ASN 2700.0204
GLN 2710.0144
LYS 2720.0136
LYS 2730.0186
ALA 2740.0195
LYS 2750.0169
ASP 2760.0152
VAL 2770.0141
LEU 2780.0083
ARG 2790.0064
LYS 2800.0121
THR 2810.0106
SER 2820.0080
ARG 2830.0062
PRO 2840.0071
MET 2850.0059
VAL 2860.0103
ASP 2870.0076
LEU 2880.0091
THR 2890.0090
PHE 2900.0075
GLY 2910.0118
GLY 2920.0132

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.