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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 76  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0942
GLU 270.0075
PRO 280.0073
CYS 290.0052
VAL 300.0053
GLU 310.0045
VAL 320.0040
VAL 330.0023
PRO 340.0030
ASN 350.0030
ILE 360.0011
THR 370.0004
TYR 380.0013
GLN 390.0020
CYS 400.0020
MET 410.0022
GLU 420.0030
LEU 430.0034
ASN 440.0029
PHE 450.0026
TYR 460.0028
LYS 470.0034
ILE 480.0033
PRO 490.0042
ASP 500.0065
ASN 510.0071
LEU 520.0048
PRO 530.0048
PHE 540.0055
SER 550.0043
THR 560.0027
LYS 570.0029
ASN 580.0021
LEU 590.0015
ASP 600.0012
LEU 610.0007
SER 620.0020
PHE 630.0017
ASN 640.0006
PRO 650.0003
LEU 660.0014
ARG 670.0015
HIS 680.0016
LEU 690.0020
GLY 700.0021
SER 710.0025
TYR 720.0035
SER 730.0027
PHE 740.0033
PHE 750.0043
SER 760.0046
PHE 770.0041
PRO 780.0052
GLU 790.0046
LEU 800.0037
GLN 810.0039
VAL 820.0031
LEU 830.0029
ASP 840.0027
LEU 850.0026
SER 860.0028
ARG 870.0029
CYS 880.0027
GLU 890.0021
ILE 900.0022
GLN 910.0018
THR 920.0020
ILE 930.0021
GLU 940.0022
ASP 950.0025
GLY 960.0027
ALA 970.0026
TYR 980.0030
GLN 990.0036
SER 1000.0038
LEU 1010.0037
SER 1020.0039
HIS 1030.0038
LEU 1040.0032
SER 1050.0035
THR 1060.0030
LEU 1070.0027
ILE 1080.0026
LEU 1090.0024
THR 1100.0024
GLY 1110.0022
ASN 1120.0021
PRO 1130.0023
ILE 1140.0023
GLN 1150.0024
SER 1160.0024
LEU 1170.0023
ALA 1180.0023
LEU 1190.0025
GLY 1200.0023
ALA 1210.0022
PHE 1220.0024
SER 1230.0026
GLY 1240.0026
LEU 1250.0026
SER 1260.0030
SER 1270.0024
LEU 1280.0022
GLN 1290.0023
LYS 1300.0021
LEU 1310.0020
VAL 1320.0016
ALA 1330.0012
VAL 1340.0011
GLU 1350.0011
THR 1360.0010
ASN 1370.0014
LEU 1380.0013
ALA 1390.0013
SER 1400.0015
LEU 1410.0015
GLU 1420.0017
ASN 1430.0017
PHE 1440.0015
PRO 1450.0016
ILE 1460.0014
GLY 1470.0011
HIS 1480.0016
LEU 1490.0013
LYS 1500.0009
THR 1510.0012
LEU 1520.0008
LYS 1530.0009
GLU 1540.0009
LEU 1550.0008
ASN 1560.0009
VAL 1570.0003
ALA 1580.0002
HIS 1590.0005
ASN 1600.0006
LEU 1610.0010
ILE 1620.0016
GLN 1630.0015
SER 1640.0018
PHE 1650.0020
LYS 1660.0024
LEU 1670.0019
PRO 1680.0023
GLU 1690.0027
TYR 1700.0024
PHE 1710.0021
SER 1720.0023
ASN 1730.0020
LEU 1740.0012
THR 1750.0015
ASN 1760.0010
LEU 1770.0005
GLU 1780.0007
HIS 1790.0005
LEU 1800.0005
ASP 1810.0004
LEU 1820.0009
SER 1830.0009
SER 1840.0010
ASN 1850.0012
LYS 1860.0014
ILE 1870.0022
GLN 1880.0022
SER 1890.0025
ILE 1900.0028
TYR 1910.0032
CYS 1920.0031
THR 1930.0032
ASP 1940.0030
LEU 1950.0031
ARG 1960.0034
VAL 1970.0029
LEU 1980.0028
HIS 1990.0032
GLN 2000.0033
MET 2010.0032
PRO 2020.0030
LEU 2030.0029
LEU 2040.0021
ASN 2050.0020
LEU 2060.0015
SER 2070.0014
LEU 2080.0013
ASP 2090.0015
LEU 2100.0015
SER 2110.0016
LEU 2120.0022
ASN 2130.0023
PRO 2140.0024
MET 2150.0024
ASN 2160.0027
PHE 2170.0031
ILE 2180.0033
GLN 2190.0034
PRO 2200.0035
GLY 2210.0037
ALA 2220.0035
PHE 2230.0033
LYS 2240.0035
GLU 2250.0035
ILE 2260.0033
ARG 2270.0020
LEU 2280.0019
HIS 2290.0017
LYS 2300.0017
LEU 2310.0018
THR 2320.0021
LEU 2330.0023
ARG 2340.0026
ASN 2350.0031
ASN 2360.0031
PHE 2370.0038
ASP 2380.0042
SER 2390.0039
LEU 2400.0036
ASN 2410.0042
VAL 2420.0040
MET 2430.0036
LYS 2440.0036
THR 2450.0040
CYS 2460.0038
ILE 2470.0035
GLN 2480.0037
GLY 2490.0039
LEU 2500.0035
ALA 2510.0035
GLY 2520.0034
LEU 2530.0029
GLU 2540.0024
VAL 2550.0020
HIS 2560.0016
ARG 2570.0017
LEU 2580.0018
VAL 2590.0021
LEU 2600.0022
GLY 2610.0023
GLU 2620.0031
PHE 2630.0039
ARG 2640.0042
ASN 2650.0051
GLU 2660.0050
GLY 2670.0048
ASN 2680.0040
LEU 2690.0038
GLU 2700.0040
LYS 2710.0037
PHE 2720.0031
ASP 2730.0034
LYS 2740.0034
SER 2750.0039
ALA 2760.0036
LEU 2770.0030
GLU 2780.0035
GLY 2790.0037
LEU 2800.0031
CYS 2810.0032
ASN 2820.0034
LEU 2830.0029
THR 2840.0022
ILE 2850.0018
GLU 2860.0013
GLU 2870.0012
PHE 2880.0013
ARG 2890.0016
LEU 2900.0016
ALA 2910.0021
TYR 2920.0023
LEU 2930.0020
ASP 2940.0021
TYR 2950.0021
TYR 2960.0016
LEU 2970.0018
ASP 2980.0027
GLY 2990.0025
ILE 3000.0019
ILE 3010.0028
ASP 3020.0029
LEU 3030.0024
PHE 3040.0018
ASN 3050.0023
CYS 3060.0025
LEU 3070.0013
THR 3080.0009
ASN 3090.0009
VAL 3100.0011
SER 3110.0012
SER 3120.0011
PHE 3130.0008
SER 3140.0013
LEU 3150.0011
VAL 3160.0018
SER 3170.0019
VAL 3180.0010
THR 3190.0011
ILE 3200.0015
GLU 3210.0025
ARG 3220.0027
VAL 3230.0022
LYS 3240.0029
ASP 3250.0020
PHE 3260.0014
SER 3270.0018
TYR 3280.0014
ASN 3290.0009
PHE 3300.0003
GLY 3310.0005
TRP 3320.0008
GLN 3330.0014
HIS 3340.0018
LEU 3350.0015
GLU 3360.0019
LEU 3370.0023
VAL 3380.0030
ASN 3390.0033
CYS 3400.0027
LYS 3410.0030
PHE 3420.0030
GLY 3430.0035
GLN 3440.0037
PHE 3450.0034
PRO 3460.0026
THR 3470.0024
LEU 3480.0020
LYS 3490.0017
LEU 3500.0014
LYS 3510.0014
SER 3520.0015
LEU 3530.0018
LYS 3540.0022
ARG 3550.0023
LEU 3560.0023
THR 3570.0030
PHE 3580.0033
THR 3590.0039
SER 3600.0044
ASN 3610.0042
LYS 3620.0046
GLY 3630.0044
GLY 3640.0043
ASN 3650.0042
ALA 3660.0042
PHE 3670.0036
SER 3680.0032
GLU 3690.0028
VAL 3700.0025
ASP 3710.0021
LEU 3720.0021
PRO 3730.0019
SER 3740.0020
LEU 3750.0024
GLU 3760.0027
PHE 3770.0029
LEU 3780.0030
ASP 3790.0034
LEU 3800.0035
SER 3810.0038
ARG 3820.0043
ASN 3830.0044
GLY 3840.0043
LEU 3850.0040
SER 3860.0038
PHE 3870.0033
LYS 3880.0035
GLY 3890.0032
CYS 3900.0022
CYS 3910.0016
SER 3920.0020
GLN 3930.0020
SER 3940.0025
ASP 3950.0027
PHE 3960.0027
GLY 3970.0024
THR 3980.0023
ILE 3990.0021
SER 4000.0023
LEU 4010.0025
LYS 4020.0021
TYR 4030.0025
LEU 4040.0024
ASP 4050.0028
LEU 4060.0028
SER 4070.0029
PHE 4080.0032
ASN 4090.0033
GLY 4100.0033
VAL 4110.0031
ILE 4120.0025
THR 4130.0027
MET 4140.0021
SER 4150.0027
SER 4160.0021
ASN 4170.0018
PHE 4180.0012
LEU 4190.0013
GLY 4200.0011
LEU 4210.0010
GLU 4220.0011
GLN 4230.0015
LEU 4240.0015
GLU 4250.0019
HIS 4260.0019
LEU 4270.0014
ASP 4280.0016
PHE 4290.0014
GLN 4300.0015
HIS 4310.0017
SER 4320.0020
ASN 4330.0020
LEU 4340.0016
LYS 4350.0024
GLN 4360.0028
MET 4370.0022
SER 4380.0031
GLU 4390.0035
PHE 4400.0031
SER 4410.0025
VAL 4420.0019
PHE 4430.0016
LEU 4440.0021
SER 4450.0017
LEU 4460.0016
ARG 4470.0024
ASN 4480.0023
LEU 4490.0018
ILE 4500.0022
TYR 4510.0017
LEU 4520.0013
ASP 4530.0010
ILE 4540.0007
SER 4550.0006
HIS 4560.0003
THR 4570.0006
HIS 4580.0013
THR 4590.0012
ARG 4600.0020
VAL 4610.0022
ALA 4620.0034
PHE 4630.0035
ASN 4640.0035
GLY 4650.0034
ILE 4660.0028
PHE 4670.0027
ASN 4680.0032
GLY 4690.0031
LEU 4700.0028
SER 4710.0033
SER 4720.0031
LEU 4730.0027
GLU 4740.0026
VAL 4750.0022
LEU 4760.0020
LYS 4770.0016
MET 4780.0016
ALA 4790.0011
GLY 4800.0010
ASN 4810.0015
SER 4820.0019
PHE 4830.0022
GLN 4840.0025
GLU 4850.0022
ASN 4860.0018
PHE 4870.0020
LEU 4880.0021
PRO 4890.0024
ASP 4900.0026
ILE 4910.0028
PHE 4920.0028
THR 4930.0032
GLU 4940.0035
LEU 4950.0032
ARG 4960.0033
ASN 4970.0031
LEU 4980.0027
THR 4990.0026
PHE 5000.0025
LEU 5010.0022
ASP 5020.0018
LEU 5030.0017
SER 5040.0015
GLN 5050.0016
CYS 5060.0018
GLN 5070.0018
LEU 5080.0014
GLU 5090.0012
GLN 5100.0009
LEU 5110.0010
SER 5120.0011
PRO 5130.0007
THR 5140.0012
ALA 5150.0016
PHE 5160.0018
ASN 5170.0016
SER 5180.0020
LEU 5190.0023
SER 5200.0025
SER 5210.0029
LEU 5220.0027
GLN 5230.0030
VAL 5240.0026
LEU 5250.0019
ASN 5260.0018
MET 5270.0013
SER 5280.0016
HIS 5290.0021
ASN 5300.0019
ASN 5310.0020
PHE 5320.0019
PHE 5330.0026
SER 5340.0023
LEU 5350.0016
ASP 5360.0020
THR 5370.0021
PHE 5380.0025
PRO 5390.0015
TYR 5400.0022
LYS 5410.0034
CYS 5420.0027
LEU 5430.0028
ASN 5440.0036
SER 5450.0038
LEU 5460.0031
GLN 5470.0036
VAL 5480.0028
LEU 5490.0018
ASP 5500.0016
TYR 5510.0010
SER 5520.0017
LEU 5530.0025
ASN 5540.0022
HIS 5550.0027
ILE 5560.0022
MET 5570.0032
THR 5580.0035
SER 5590.0036
LYS 5600.0044
LYS 5610.0044
GLN 5620.0050
GLU 5630.0046
LEU 5640.0037
GLN 5650.0046
HIS 5660.0043
PHE 5670.0031
PRO 5680.0039
SER 5690.0049
SER 5700.0048
LEU 5710.0036
ALA 5720.0032
PHE 5730.0024
LEU 5740.0015
ASN 5750.0015
LEU 5760.0011
THR 5770.0018
GLN 5780.0025
ASN 5790.0021
ASP 5800.0029
PHE 5810.0027
ALA 5820.0031
CYS 5830.0043
THR 5840.0055
CYS 5850.0072
GLU 5860.0067
HIS 5870.0032
GLN 5880.0027
SER 5890.0028
PHE 5900.0030
LEU 5910.0026
GLN 5920.0020
TRP 5930.0020
ILE 5940.0019
LYS 5950.0019
ASP 5960.0019
GLN 5970.0010
ARG 5980.0007
GLN 5990.0013
LEU 6000.0012
LEU 6010.0010
VAL 6020.0022
GLU 6030.0019
VAL 6040.0011
GLU 6050.0019
ARG 6060.0023
MET 6070.0019
GLU 6080.0029
CYS 6090.0035
ALA 6100.0040
THR 6110.0044
PRO 6120.0067
SER 6130.0085
ASP 6140.0100
LYS 6150.0081
GLN 6160.0073
GLY 6170.0046
MET 6180.0040
PRO 6190.0027
VAL 6200.0024
LEU 6210.0020
SER 6220.0058
LEU 6230.0015
ASN 6240.0026
ILE 6250.0063
THR 6260.0094
CYS 6270.0848
GLU 10.0056
ALA 20.0025
ALA 30.0028
ALA 40.0024
LYS 50.0033
MET 60.0031
GLN 70.0026
ARG 80.0030
LEU 90.0039
VAL 100.0038
LEU 110.0030
LEU 120.0019
LEU 130.0012
ALA 140.0021
ILE 150.0011
SER 160.0029
LEU 170.0047
LEU 180.0030
LEU 190.0027
TYR 200.0059
GLN 210.0047
ASP 220.0020
LEU 230.0034
PRO 240.0035
VAL 250.0062
ARG 260.0027
SER 270.0024
GLU 280.0021
PHE 290.0020
GLU 300.0018
LEU 310.0020
ASP 320.0021
ARG 330.0020
ILE 340.0017
CYS 350.0016
GLY 360.0018
TYR 370.0016
GLY 380.0015
THR 390.0013
ALA 400.0020
ARG 410.0016
CYS 420.0017
ARG 430.0019
LYS 440.0025
LYS 450.0023
CYS 460.0016
ARG 470.0015
SER 480.0016
GLN 490.0018
GLU 500.0018
TYR 510.0019
ARG 520.0021
ILE 530.0026
GLY 540.0032
ARG 550.0034
CYS 560.0026
PRO 570.0030
ASN 580.0030
THR 590.0039
TYR 600.0033
ALA 610.0023
CYS 620.0020
CYS 630.0018
LEU 640.0017
ARG 650.0017
LYS 660.0023
TRP 670.0024
ASP 680.0020
GLU 690.0024
SER 700.0020
LEU 710.0019
LEU 720.0035
ASN 730.0033
ARG 740.0029
THR 750.0044
LYS 760.0103
PRO 770.0158
GLU 780.0144
ALA 790.0215
ALA 800.0257
ALA 810.0278
LYS 820.0265
LYS 830.0140
GLU 840.0155
MET 850.0137
ASN 860.0225
LEU 870.0228
SER 880.0213
VAL 890.0197
GLY 900.0208
LEU 910.0235
GLY 920.0579
GLY 930.0942
GLY 940.0936
SER 950.0590
ASN 960.0215
LEU 970.0158
SER 980.0176
VAL 990.0175
GLY 1000.0199
LEU 1010.0270
GLY 1020.0357
GLU 1030.0333
ILE 1040.0440
GLY 1050.0432
GLY 1060.0302
GLY 1070.0304
SER 1080.0310
LYS 1090.0283
LEU 1100.0302
LEU 1110.0178
ASP 1120.0137
ILE 1130.0098
ASN 1140.0123
LEU 1150.0098
GLY 1160.0135
ARG 1170.0182
GLY 1180.0229
GLY 1190.0244
GLY 1200.0178
SER 1210.0066
MET 1220.0083
VAL 1230.0094
ASP 1240.0114
LEU 1250.0139
THR 1260.0173
PHE 1270.0121
GLY 1280.0135
GLY 1290.0156
VAL 1300.0144
GLY 1310.0279
GLY 1320.0276
GLY 1330.0301
SER 1340.0234
THR 1350.0259
PHE 1360.0143
THR 1370.0095
PHE 1380.0103
PHE 1390.0081
PRO 1400.0128
LEU 1410.0164
VAL 1420.0187
ILE 1430.0240
GLY 1440.0339
GLY 1450.0496
GLY 1460.0758
SER 1470.0615
ASP 1480.0389
ALA 1490.0378
MET 1500.0218
TYR 1510.0152
LEU 1520.0153
GLY 1530.0133
PHE 1540.0147
ALA 1550.0134
ALA 1560.0162
GLY 1570.0233
GLY 1580.0314
GLY 1590.0384
SER 1600.0427
ALA 1610.0373
GLY 1620.0379
GLY 1630.0341
GLU 1640.0279
ASN 1650.0208
HIS 1660.0158
VAL 1670.0134
ALA 1680.0165
PHE 1690.0182
GLY 1700.0218
PRO 1710.0222
GLY 1720.0217
PRO 1730.0293
GLY 1740.0162
VAL 1750.0144
ASP 1760.0167
LEU 1770.0097
THR 1780.0146
PHE 1790.0192
GLY 1800.0281
GLY 1810.0323
VAL 1820.0206
GLN 1830.0109
PHE 1840.0140
ALA 1850.0246
MET 1860.0381
VAL 1870.0469
ASN 1880.0260
ASN 1890.0184
GLY 1900.0269
PRO 1910.0256
GLY 1920.0201
PRO 1930.0150
GLY 1940.0072
GLU 1950.0117
SER 1960.0397
PHE 1970.0239
THR 1980.0160
ALA 1990.0155
GLN 2000.0188
PRO 2010.0147
ALA 2020.0136
ASP 2030.0219
MET 2040.0151
GLN 2050.0143
ALA 2060.0101
GLY 2070.0107
ILE 2080.0077
LYS 2090.0066
GLY 2100.0112
PRO 2110.0070
GLY 2120.0066
PRO 2130.0101
GLY 2140.0059
GLY 2150.0127
SER 2160.0129
ILE 2170.0089
GLN 2180.0177
VAL 2190.0208
ILE 2200.0299
ASN 2210.0474
GLY 2220.0433
SER 2230.0396
THR 2240.0421
ILE 2250.0490
GLY 2260.0286
THR 2270.0051
GLY 2280.0262
SER 2290.0462
LYS 2300.0369
LYS 2310.0211
THR 2320.0254
ILE 2330.0173
LEU 2340.0108
ILE 2350.0208
TYR 2360.0097
SER 2370.0063
ILE 2380.0063
ILE 2390.0050
GLY 2400.0075
VAL 2410.0029
LYS 2420.0027
LYS 2430.0032
GLY 2440.0034
THR 2450.0030
LEU 2460.0040
ALA 2470.0035
TRP 2480.0047
ALA 2490.0065
ARG 2500.0087
THR 2510.0170
GLY 2520.0209
PHE 2530.0148
SER 2540.0183
PRO 2550.0143
ALA 2560.0156
LYS 2570.0161
LYS 2580.0141
LEU 2590.0042
ASN 2600.0026
ALA 2610.0679
GLY 2620.0474
VAL 2630.0439
VAL 2640.0494
ARG 2650.0240
VAL 2660.0213
PHE 2670.0156
PHE 2680.0132
LEU 2690.0077
ASN 2700.0054
GLN 2710.0025
LYS 2720.0016
LYS 2730.0012
ALA 2740.0020
LYS 2750.0014
ASP 2760.0024
VAL 2770.0022
LEU 2780.0023
ARG 2790.0024
LYS 2800.0022
THR 2810.0036
SER 2820.0112
ARG 2830.0110
PRO 2840.0202
MET 2850.0233
VAL 2860.0186
ASP 2870.0159
LEU 2880.0091
THR 2890.0072
PHE 2900.0047
GLY 2910.0063
GLY 2920.0147

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.