CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 77  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1361
GLU 270.0077
PRO 280.0064
CYS 290.0049
VAL 300.0067
GLU 310.0091
VAL 320.0135
VAL 330.0162
PRO 340.0151
ASN 350.0153
ILE 360.0157
THR 370.0123
TYR 380.0082
GLN 390.0076
CYS 400.0054
MET 410.0091
GLU 420.0110
LEU 430.0101
ASN 440.0109
PHE 450.0084
TYR 460.0093
LYS 470.0067
ILE 480.0048
PRO 490.0058
ASP 500.0091
ASN 510.0093
LEU 520.0081
PRO 530.0110
PHE 540.0121
SER 550.0136
THR 560.0111
LYS 570.0116
ASN 580.0099
LEU 590.0071
ASP 600.0068
LEU 610.0054
SER 620.0070
PHE 630.0080
ASN 640.0071
PRO 650.0070
LEU 660.0056
ARG 670.0048
HIS 680.0046
LEU 690.0048
GLY 700.0049
SER 710.0055
TYR 720.0048
SER 730.0033
PHE 740.0056
PHE 750.0070
SER 760.0078
PHE 770.0075
PRO 780.0090
GLU 790.0097
LEU 800.0085
GLN 810.0094
VAL 820.0068
LEU 830.0056
ASP 840.0049
LEU 850.0045
SER 860.0056
ARG 870.0043
CYS 880.0045
GLU 890.0044
ILE 900.0051
GLN 910.0059
THR 920.0057
ILE 930.0059
GLU 940.0062
ASP 950.0067
GLY 960.0066
ALA 970.0048
TYR 980.0058
GLN 990.0067
SER 1000.0068
LEU 1010.0071
SER 1020.0072
HIS 1030.0067
LEU 1040.0058
SER 1050.0061
THR 1060.0052
LEU 1070.0042
ILE 1080.0037
LEU 1090.0042
THR 1100.0047
GLY 1110.0050
ASN 1120.0047
PRO 1130.0055
ILE 1140.0060
GLN 1150.0072
SER 1160.0078
LEU 1170.0066
ALA 1180.0072
LEU 1190.0077
GLY 1200.0073
ALA 1210.0063
PHE 1220.0058
SER 1230.0065
GLY 1240.0062
LEU 1250.0054
SER 1260.0062
SER 1270.0041
LEU 1280.0037
GLN 1290.0032
LYS 1300.0030
LEU 1310.0038
VAL 1320.0037
ALA 1330.0045
VAL 1340.0049
GLU 1350.0055
THR 1360.0052
ASN 1370.0054
LEU 1380.0049
ALA 1390.0048
SER 1400.0044
LEU 1410.0042
GLU 1420.0045
ASN 1430.0050
PHE 1440.0046
PRO 1450.0048
ILE 1460.0042
GLY 1470.0031
HIS 1480.0041
LEU 1490.0035
LYS 1500.0027
THR 1510.0024
LEU 1520.0020
LYS 1530.0016
GLU 1540.0022
LEU 1550.0031
ASN 1560.0038
VAL 1570.0044
ALA 1580.0046
HIS 1590.0050
ASN 1600.0050
LEU 1610.0053
ILE 1620.0042
GLN 1630.0041
SER 1640.0042
PHE 1650.0043
LYS 1660.0048
LEU 1670.0031
PRO 1680.0036
GLU 1690.0043
TYR 1700.0045
PHE 1710.0041
SER 1720.0032
ASN 1730.0036
LEU 1740.0021
THR 1750.0024
ASN 1760.0012
LEU 1770.0014
GLU 1780.0015
HIS 1790.0023
LEU 1800.0028
ASP 1810.0036
LEU 1820.0043
SER 1830.0043
SER 1840.0046
ASN 1850.0048
LYS 1860.0048
ILE 1870.0052
GLN 1880.0052
SER 1890.0057
ILE 1900.0058
TYR 1910.0070
CYS 1920.0059
THR 1930.0062
ASP 1940.0058
LEU 1950.0057
ARG 1960.0061
VAL 1970.0051
LEU 1980.0048
HIS 1990.0054
GLN 2000.0058
MET 2010.0054
PRO 2020.0046
LEU 2030.0041
LEU 2040.0033
ASN 2050.0029
LEU 2060.0029
SER 2070.0039
LEU 2080.0040
ASP 2090.0043
LEU 2100.0044
SER 2110.0044
LEU 2120.0048
ASN 2130.0055
PRO 2140.0058
MET 2150.0059
ASN 2160.0065
PHE 2170.0070
ILE 2180.0068
GLN 2190.0073
PRO 2200.0070
GLY 2210.0069
ALA 2220.0067
PHE 2230.0057
LYS 2240.0060
GLU 2250.0056
ILE 2260.0052
ARG 2270.0037
LEU 2280.0040
HIS 2290.0042
LYS 2300.0040
LEU 2310.0038
THR 2320.0045
LEU 2330.0045
ARG 2340.0049
ASN 2350.0058
ASN 2360.0062
PHE 2370.0077
ASP 2380.0091
SER 2390.0089
LEU 2400.0081
ASN 2410.0097
VAL 2420.0085
MET 2430.0068
LYS 2440.0069
THR 2450.0078
CYS 2460.0071
ILE 2470.0057
GLN 2480.0064
GLY 2490.0069
LEU 2500.0055
ALA 2510.0050
GLY 2520.0046
LEU 2530.0039
GLU 2540.0030
VAL 2550.0032
HIS 2560.0039
ARG 2570.0038
LEU 2580.0028
VAL 2590.0031
LEU 2600.0029
GLY 2610.0033
GLU 2620.0053
PHE 2630.0065
ARG 2640.0065
ASN 2650.0090
GLU 2660.0096
GLY 2670.0100
ASN 2680.0084
LEU 2690.0087
GLU 2700.0103
LYS 2710.0098
PHE 2720.0077
ASP 2730.0084
LYS 2740.0076
SER 2750.0075
ALA 2760.0067
LEU 2770.0044
GLU 2780.0052
GLY 2790.0049
LEU 2800.0031
CYS 2810.0030
ASN 2820.0040
LEU 2830.0027
THR 2840.0018
ILE 2850.0023
GLU 2860.0039
GLU 2870.0039
PHE 2880.0024
ARG 2890.0023
LEU 2900.0015
ALA 2910.0024
TYR 2920.0026
LEU 2930.0039
ASP 2940.0054
TYR 2950.0068
TYR 2960.0068
LEU 2970.0066
ASP 2980.0084
GLY 2990.0075
ILE 3000.0057
ILE 3010.0068
ASP 3020.0061
LEU 3030.0049
PHE 3040.0033
ASN 3050.0039
CYS 3060.0022
LEU 3070.0020
THR 3080.0035
ASN 3090.0041
VAL 3100.0036
SER 3110.0050
SER 3120.0047
PHE 3130.0035
SER 3140.0030
LEU 3150.0020
VAL 3160.0017
SER 3170.0011
VAL 3180.0023
THR 3190.0042
ILE 3200.0054
GLU 3210.0074
ARG 3220.0073
VAL 3230.0064
LYS 3240.0077
ASP 3250.0060
PHE 3260.0055
SER 3270.0060
TYR 3280.0052
ASN 3290.0054
PHE 3300.0044
GLY 3310.0050
TRP 3320.0049
GLN 3330.0058
HIS 3340.0053
LEU 3350.0046
GLU 3360.0042
LEU 3370.0040
VAL 3380.0036
ASN 3390.0032
CYS 3400.0036
LYS 3410.0045
PHE 3420.0053
GLY 3430.0064
GLN 3440.0068
PHE 3450.0065
PRO 3460.0057
THR 3470.0055
LEU 3480.0050
LYS 3490.0052
LEU 3500.0051
LYS 3510.0062
SER 3520.0059
LEU 3530.0052
LYS 3540.0056
ARG 3550.0052
LEU 3560.0052
THR 3570.0053
PHE 3580.0053
THR 3590.0053
SER 3600.0053
ASN 3610.0053
LYS 3620.0055
GLY 3630.0053
GLY 3640.0054
ASN 3650.0057
ALA 3660.0060
PHE 3670.0054
SER 3680.0052
GLU 3690.0052
VAL 3700.0049
ASP 3710.0050
LEU 3720.0048
PRO 3730.0047
SER 3740.0048
LEU 3750.0047
GLU 3760.0070
PHE 3770.0055
LEU 3780.0055
ASP 3790.0057
LEU 3800.0056
SER 3810.0059
ARG 3820.0058
ASN 3830.0056
GLY 3840.0051
LEU 3850.0048
SER 3860.0042
PHE 3870.0041
LYS 3880.0047
GLY 3890.0051
CYS 3900.0042
CYS 3910.0041
SER 3920.0055
GLN 3930.0055
SER 3940.0061
ASP 3950.0055
PHE 3960.0054
GLY 3970.0051
THR 3980.0059
ILE 3990.0075
SER 4000.0074
LEU 4010.0073
LYS 4020.0049
TYR 4030.0052
LEU 4040.0048
ASP 4050.0053
LEU 4060.0048
SER 4070.0040
PHE 4080.0041
ASN 4090.0038
GLY 4100.0035
VAL 4110.0033
ILE 4120.0034
THR 4130.0040
MET 4140.0040
SER 4150.0047
SER 4160.0041
ASN 4170.0046
PHE 4180.0040
LEU 4190.0041
GLY 4200.0041
LEU 4210.0041
GLU 4220.0051
GLN 4230.0051
LEU 4240.0051
GLU 4250.0056
HIS 4260.0054
LEU 4270.0035
ASP 4280.0033
PHE 4290.0027
GLN 4300.0029
HIS 4310.0025
SER 4320.0025
ASN 4330.0026
LEU 4340.0030
LYS 4350.0040
GLN 4360.0050
MET 4370.0046
SER 4380.0061
GLU 4390.0062
PHE 4400.0057
SER 4410.0055
VAL 4420.0050
PHE 4430.0050
LEU 4440.0055
SER 4450.0052
LEU 4460.0052
ARG 4470.0067
ASN 4480.0065
LEU 4490.0059
ILE 4500.0063
TYR 4510.0056
LEU 4520.0049
ASP 4530.0038
ILE 4540.0034
SER 4550.0027
HIS 4560.0019
THR 4570.0023
HIS 4580.0028
THR 4590.0034
ARG 4600.0046
VAL 4610.0054
ALA 4620.0073
PHE 4630.0075
ASN 4640.0078
GLY 4650.0078
ILE 4660.0068
PHE 4670.0070
ASN 4680.0078
GLY 4690.0080
LEU 4700.0075
SER 4710.0083
SER 4720.0083
LEU 4730.0074
GLU 4740.0069
VAL 4750.0063
LEU 4760.0059
LYS 4770.0046
MET 4780.0046
ALA 4790.0035
GLY 4800.0034
ASN 4810.0045
SER 4820.0055
PHE 4830.0062
GLN 4840.0072
GLU 4850.0072
ASN 4860.0060
PHE 4870.0064
LEU 4880.0060
PRO 4890.0069
ASP 4900.0070
ILE 4910.0077
PHE 4920.0074
THR 4930.0082
GLU 4940.0089
LEU 4950.0081
ARG 4960.0082
ASN 4970.0079
LEU 4980.0071
THR 4990.0071
PHE 5000.0068
LEU 5010.0060
ASP 5020.0048
LEU 5030.0047
SER 5040.0041
GLN 5050.0044
CYS 5060.0051
GLN 5070.0050
LEU 5080.0046
GLU 5090.0045
GLN 5100.0042
LEU 5110.0040
SER 5120.0051
PRO 5130.0044
THR 5140.0049
ALA 5150.0056
PHE 5160.0058
ASN 5170.0053
SER 5180.0061
LEU 5190.0066
SER 5200.0071
SER 5210.0081
LEU 5220.0077
GLN 5230.0085
VAL 5240.0075
LEU 5250.0059
ASN 5260.0055
MET 5270.0043
SER 5280.0042
HIS 5290.0049
ASN 5300.0046
ASN 5310.0045
PHE 5320.0035
PHE 5330.0044
SER 5340.0040
LEU 5350.0037
ASP 5360.0044
THR 5370.0058
PHE 5380.0063
PRO 5390.0052
TYR 5400.0068
LYS 5410.0089
CYS 5420.0077
LEU 5430.0081
ASN 5440.0100
SER 5450.0104
LEU 5460.0088
GLN 5470.0095
VAL 5480.0077
LEU 5490.0058
ASP 5500.0050
TYR 5510.0036
SER 5520.0040
LEU 5530.0052
ASN 5540.0045
HIS 5550.0049
ILE 5560.0040
MET 5570.0054
THR 5580.0063
SER 5590.0066
LYS 5600.0078
LYS 5610.0081
GLN 5620.0098
GLU 5630.0096
LEU 5640.0079
GLN 5650.0101
HIS 5660.0100
PHE 5670.0081
PRO 5680.0101
SER 5690.0121
SER 5700.0120
LEU 5710.0093
ALA 5720.0069
PHE 5730.0054
LEU 5740.0039
ASN 5750.0037
LEU 5760.0031
THR 5770.0047
GLN 5780.0058
ASN 5790.0050
ASP 5800.0059
PHE 5810.0056
ALA 5820.0052
CYS 5830.0076
THR 5840.0096
CYS 5850.0134
GLU 5860.0125
HIS 5870.0059
GLN 5880.0056
SER 5890.0051
PHE 5900.0054
LEU 5910.0055
GLN 5920.0049
TRP 5930.0043
ILE 5940.0048
LYS 5950.0054
ASP 5960.0048
GLN 5970.0030
ARG 5980.0026
GLN 5990.0024
LEU 6000.0025
LEU 6010.0026
VAL 6020.0035
GLU 6030.0044
VAL 6040.0043
GLU 6050.0059
ARG 6060.0062
MET 6070.0062
GLU 6080.0077
CYS 6090.0077
ALA 6100.0078
THR 6110.0075
PRO 6120.0097
SER 6130.0126
ASP 6140.0156
LYS 6150.0137
GLN 6160.0128
GLY 6170.0110
MET 6180.0103
PRO 6190.0083
VAL 6200.0068
LEU 6210.0065
SER 6220.0126
LEU 6230.0053
ASN 6240.0059
ILE 6250.0117
THR 6260.0160
CYS 6270.1361
GLU 10.0450
ALA 20.0156
ALA 30.0266
ALA 40.0180
LYS 50.0167
MET 60.0278
GLN 70.0231
ARG 80.0182
LEU 90.0301
VAL 100.0331
LEU 110.0246
LEU 120.0202
LEU 130.0097
ALA 140.0113
ILE 150.0082
SER 160.0279
LEU 170.0431
LEU 180.0280
LEU 190.0220
TYR 200.0541
GLN 210.0478
ASP 220.0219
LEU 230.0246
PRO 240.0287
VAL 250.0554
ARG 260.0122
SER 270.0089
GLU 280.0052
PHE 290.0058
GLU 300.0070
LEU 310.0065
ASP 320.0067
ARG 330.0064
ILE 340.0054
CYS 350.0049
GLY 360.0041
TYR 370.0042
GLY 380.0038
THR 390.0038
ALA 400.0050
ARG 410.0059
CYS 420.0070
ARG 430.0079
LYS 440.0093
LYS 450.0092
CYS 460.0066
ARG 470.0054
SER 480.0054
GLN 490.0048
GLU 500.0055
TYR 510.0075
ARG 520.0084
ILE 530.0083
GLY 540.0091
ARG 550.0096
CYS 560.0080
PRO 570.0082
ASN 580.0098
THR 590.0101
TYR 600.0101
ALA 610.0090
CYS 620.0074
CYS 630.0063
LEU 640.0051
ARG 650.0043
LYS 660.0024
TRP 670.0033
ASP 680.0032
GLU 690.0038
SER 700.0044
LEU 710.0055
LEU 720.0056
ASN 730.0050
ARG 740.0061
THR 750.0070
LYS 760.0083
PRO 770.0102
GLU 780.0083
ALA 790.0096
ALA 800.0132
ALA 810.0170
LYS 820.0153
LYS 830.0104
GLU 840.0093
MET 850.0056
ASN 860.0046
LEU 870.0049
SER 880.0043
VAL 890.0048
GLY 900.0042
LEU 910.0084
GLY 920.0188
GLY 930.0333
GLY 940.0335
SER 950.0236
ASN 960.0085
LEU 970.0080
SER 980.0074
VAL 990.0070
GLY 1000.0067
LEU 1010.0094
GLY 1020.0154
GLU 1030.0140
ILE 1040.0160
GLY 1050.0144
GLY 1060.0181
GLY 1070.0151
SER 1080.0127
LYS 1090.0080
LEU 1100.0059
LEU 1110.0030
ASP 1120.0010
ILE 1130.0012
ASN 1140.0011
LEU 1150.0012
GLY 1160.0037
ARG 1170.0041
GLY 1180.0061
GLY 1190.0074
GLY 1200.0081
SER 1210.0055
MET 1220.0050
VAL 1230.0056
ASP 1240.0050
LEU 1250.0061
THR 1260.0078
PHE 1270.0065
GLY 1280.0067
GLY 1290.0073
VAL 1300.0066
GLY 1310.0090
GLY 1320.0072
GLY 1330.0109
SER 1340.0091
THR 1350.0126
PHE 1360.0070
THR 1370.0042
PHE 1380.0058
PHE 1390.0046
PRO 1400.0078
LEU 1410.0121
VAL 1420.0152
ILE 1430.0115
GLY 1440.0119
GLY 1450.0148
GLY 1460.0265
SER 1470.0215
ASP 1480.0138
ALA 1490.0134
MET 1500.0090
TYR 1510.0078
LEU 1520.0069
GLY 1530.0065
PHE 1540.0059
ALA 1550.0051
ALA 1560.0068
GLY 1570.0144
GLY 1580.0173
GLY 1590.0204
SER 1600.0204
ALA 1610.0215
GLY 1620.0220
GLY 1630.0189
GLU 1640.0159
ASN 1650.0109
HIS 1660.0084
VAL 1670.0075
ALA 1680.0082
PHE 1690.0083
GLY 1700.0097
PRO 1710.0074
GLY 1720.0039
PRO 1730.0070
GLY 1740.0019
VAL 1750.0062
ASP 1760.0075
LEU 1770.0081
THR 1780.0069
PHE 1790.0101
GLY 1800.0092
GLY 1810.0061
VAL 1820.0133
GLN 1830.0142
PHE 1840.0192
ALA 1850.0226
MET 1860.0227
VAL 1870.0256
ASN 1880.0082
ASN 1890.0108
GLY 1900.0124
PRO 1910.0195
GLY 1920.0154
PRO 1930.0092
GLY 1940.0116
GLU 1950.0113
SER 1960.0562
PHE 1970.0226
THR 1980.0276
ALA 1990.0302
GLN 2000.0233
PRO 2010.0264
ALA 2020.0165
ASP 2030.0272
MET 2040.0227
GLN 2050.0132
ALA 2060.0486
GLY 2070.0313
ILE 2080.0214
LYS 2090.0034
GLY 2100.0159
PRO 2110.0263
GLY 2120.0133
PRO 2130.0135
GLY 2140.0180
GLY 2150.0149
SER 2160.0119
ILE 2170.0133
GLN 2180.0150
VAL 2190.0160
ILE 2200.0181
ASN 2210.0219
GLY 2220.0124
SER 2230.0103
THR 2240.0080
ILE 2250.0053
GLY 2260.0098
THR 2270.0081
GLY 2280.0076
SER 2290.0068
LYS 2300.0083
LYS 2310.0049
THR 2320.0038
ILE 2330.0039
LEU 2340.0047
ILE 2350.0064
TYR 2360.0076
SER 2370.0082
ILE 2380.0074
ILE 2390.0084
GLY 2400.0078
VAL 2410.0029
LYS 2420.0024
LYS 2430.0026
GLY 2440.0032
THR 2450.0033
LEU 2460.0058
ALA 2470.0071
TRP 2480.0083
ALA 2490.0108
ARG 2500.0127
THR 2510.0198
GLY 2520.0174
PHE 2530.0105
SER 2540.0096
PRO 2550.0124
ALA 2560.0153
LYS 2570.0155
LYS 2580.0107
LEU 2590.0067
ASN 2600.0034
ALA 2610.0113
GLY 2620.0079
VAL 2630.0091
VAL 2640.0103
ARG 2650.0065
VAL 2660.0032
PHE 2670.0035
PHE 2680.0025
LEU 2690.0030
ASN 2700.0019
GLN 2710.0015
LYS 2720.0023
LYS 2730.0026
ALA 2740.0028
LYS 2750.0034
ASP 2760.0047
VAL 2770.0046
LEU 2780.0050
ARG 2790.0046
LYS 2800.0040
THR 2810.0045
SER 2820.0052
ARG 2830.0049
PRO 2840.0056
MET 2850.0060
VAL 2860.0084
ASP 2870.0064
LEU 2880.0058
THR 2890.0057
PHE 2900.0050
GLY 2910.0082
GLY 2920.0128

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.