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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 78  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1180
GLU 270.0051
PRO 280.0025
CYS 290.0040
VAL 300.0068
GLU 310.0094
VAL 320.0126
VAL 330.0142
PRO 340.0134
ASN 350.0118
ILE 360.0117
THR 370.0099
TYR 380.0068
GLN 390.0063
CYS 400.0038
MET 410.0063
GLU 420.0074
LEU 430.0063
ASN 440.0071
PHE 450.0054
TYR 460.0062
LYS 470.0047
ILE 480.0027
PRO 490.0023
ASP 500.0040
ASN 510.0048
LEU 520.0050
PRO 530.0068
PHE 540.0064
SER 550.0080
THR 560.0070
LYS 570.0072
ASN 580.0067
LEU 590.0049
ASP 600.0052
LEU 610.0043
SER 620.0054
PHE 630.0062
ASN 640.0057
PRO 650.0059
LEU 660.0049
ARG 670.0038
HIS 680.0036
LEU 690.0034
GLY 700.0034
SER 710.0033
TYR 720.0021
SER 730.0019
PHE 740.0026
PHE 750.0027
SER 760.0031
PHE 770.0031
PRO 780.0035
GLU 790.0044
LEU 800.0043
GLN 810.0052
VAL 820.0043
LEU 830.0038
ASP 840.0035
LEU 850.0035
SER 860.0039
ARG 870.0033
CYS 880.0037
GLU 890.0032
ILE 900.0034
GLN 910.0034
THR 920.0033
ILE 930.0033
GLU 940.0035
ASP 950.0036
GLY 960.0035
ALA 970.0028
TYR 980.0031
GLN 990.0034
SER 1000.0034
LEU 1010.0035
SER 1020.0038
HIS 1030.0035
LEU 1040.0030
SER 1050.0027
THR 1060.0022
LEU 1070.0022
ILE 1080.0018
LEU 1090.0019
THR 1100.0022
GLY 1110.0025
ASN 1120.0023
PRO 1130.0024
ILE 1140.0027
GLN 1150.0035
SER 1160.0040
LEU 1170.0032
ALA 1180.0037
LEU 1190.0039
GLY 1200.0039
ALA 1210.0032
PHE 1220.0027
SER 1230.0034
GLY 1240.0035
LEU 1250.0028
SER 1260.0033
SER 1270.0021
LEU 1280.0012
GLN 1290.0003
LYS 1300.0008
LEU 1310.0013
VAL 1320.0018
ALA 1330.0023
VAL 1340.0030
GLU 1350.0034
THR 1360.0030
ASN 1370.0040
LEU 1380.0038
ALA 1390.0041
SER 1400.0039
LEU 1410.0036
GLU 1420.0036
ASN 1430.0037
PHE 1440.0032
PRO 1450.0030
ILE 1460.0026
GLY 1470.0020
HIS 1480.0022
LEU 1490.0017
LYS 1500.0015
THR 1510.0010
LEU 1520.0011
LYS 1530.0015
GLU 1540.0022
LEU 1550.0026
ASN 1560.0033
VAL 1570.0037
ALA 1580.0042
HIS 1590.0047
ASN 1600.0046
LEU 1610.0050
ILE 1620.0044
GLN 1630.0043
SER 1640.0040
PHE 1650.0038
LYS 1660.0039
LEU 1670.0034
PRO 1680.0033
GLU 1690.0032
TYR 1700.0032
PHE 1710.0031
SER 1720.0022
ASN 1730.0024
LEU 1740.0020
THR 1750.0018
ASN 1760.0016
LEU 1770.0022
GLU 1780.0023
HIS 1790.0029
LEU 1800.0033
ASP 1810.0039
LEU 1820.0040
SER 1830.0041
SER 1840.0045
ASN 1850.0046
LYS 1860.0046
ILE 1870.0037
GLN 1880.0033
SER 1890.0034
ILE 1900.0034
TYR 1910.0041
CYS 1920.0036
THR 1930.0040
ASP 1940.0039
LEU 1950.0036
ARG 1960.0039
VAL 1970.0036
LEU 1980.0032
HIS 1990.0033
GLN 2000.0036
MET 2010.0034
PRO 2020.0029
LEU 2030.0028
LEU 2040.0029
ASN 2050.0026
LEU 2060.0026
SER 2070.0031
LEU 2080.0031
ASP 2090.0032
LEU 2100.0031
SER 2110.0029
LEU 2120.0026
ASN 2130.0029
PRO 2140.0027
MET 2150.0027
ASN 2160.0030
PHE 2170.0031
ILE 2180.0031
GLN 2190.0037
PRO 2200.0036
GLY 2210.0036
ALA 2220.0035
PHE 2230.0028
LYS 2240.0030
GLU 2250.0030
ILE 2260.0028
ARG 2270.0020
LEU 2280.0022
HIS 2290.0023
LYS 2300.0021
LEU 2310.0019
THR 2320.0019
LEU 2330.0015
ARG 2340.0011
ASN 2350.0010
ASN 2360.0016
PHE 2370.0018
ASP 2380.0024
SER 2390.0030
LEU 2400.0032
ASN 2410.0040
VAL 2420.0029
MET 2430.0021
LYS 2440.0026
THR 2450.0032
CYS 2460.0026
ILE 2470.0018
GLN 2480.0026
GLY 2490.0029
LEU 2500.0021
ALA 2510.0023
GLY 2520.0020
LEU 2530.0016
GLU 2540.0011
VAL 2550.0013
HIS 2560.0018
ARG 2570.0017
LEU 2580.0010
VAL 2590.0010
LEU 2600.0006
GLY 2610.0007
GLU 2620.0007
PHE 2630.0006
ARG 2640.0017
ASN 2650.0011
GLU 2660.0012
GLY 2670.0022
ASN 2680.0024
LEU 2690.0028
GLU 2700.0039
LYS 2710.0040
PHE 2720.0034
ASP 2730.0036
LYS 2740.0033
SER 2750.0029
ALA 2760.0026
LEU 2770.0019
GLU 2780.0022
GLY 2790.0018
LEU 2800.0012
CYS 2810.0014
ASN 2820.0018
LEU 2830.0009
THR 2840.0008
ILE 2850.0013
GLU 2860.0021
GLU 2870.0023
PHE 2880.0018
ARG 2890.0017
LEU 2900.0016
ALA 2910.0015
TYR 2920.0019
LEU 2930.0024
ASP 2940.0029
TYR 2950.0033
TYR 2960.0037
LEU 2970.0035
ASP 2980.0039
GLY 2990.0035
ILE 3000.0030
ILE 3010.0031
ASP 3020.0029
LEU 3030.0026
PHE 3040.0023
ASN 3050.0024
CYS 3060.0019
LEU 3070.0021
THR 3080.0026
ASN 3090.0029
VAL 3100.0026
SER 3110.0030
SER 3120.0028
PHE 3130.0024
SER 3140.0021
LEU 3150.0021
VAL 3160.0022
SER 3170.0027
VAL 3180.0028
THR 3190.0032
ILE 3200.0033
GLU 3210.0038
ARG 3220.0038
VAL 3230.0035
LYS 3240.0037
ASP 3250.0029
PHE 3260.0028
SER 3270.0034
TYR 3280.0031
ASN 3290.0034
PHE 3300.0028
GLY 3310.0033
TRP 3320.0029
GLN 3330.0032
HIS 3340.0026
LEU 3350.0022
GLU 3360.0020
LEU 3370.0020
VAL 3380.0024
ASN 3390.0031
CYS 3400.0030
LYS 3410.0036
PHE 3420.0037
GLY 3430.0041
GLN 3440.0041
PHE 3450.0037
PRO 3460.0032
THR 3470.0031
LEU 3480.0024
LYS 3490.0028
LEU 3500.0026
LYS 3510.0035
SER 3520.0030
LEU 3530.0024
LYS 3540.0023
ARG 3550.0019
LEU 3560.0017
THR 3570.0016
PHE 3580.0020
THR 3590.0025
SER 3600.0034
ASN 3610.0033
LYS 3620.0043
GLY 3630.0042
GLY 3640.0043
ASN 3650.0042
ALA 3660.0045
PHE 3670.0041
SER 3680.0039
GLU 3690.0037
VAL 3700.0028
ASP 3710.0028
LEU 3720.0016
PRO 3730.0019
SER 3740.0020
LEU 3750.0016
GLU 3760.0024
PHE 3770.0012
LEU 3780.0013
ASP 3790.0016
LEU 3800.0023
SER 3810.0028
ARG 3820.0035
ASN 3830.0035
GLY 3840.0039
LEU 3850.0037
SER 3860.0040
PHE 3870.0040
LYS 3880.0047
GLY 3890.0046
CYS 3900.0038
CYS 3910.0031
SER 3920.0038
GLN 3930.0036
SER 3940.0042
ASP 3950.0037
PHE 3960.0028
GLY 3970.0029
THR 3980.0029
ILE 3990.0037
SER 4000.0032
LEU 4010.0027
LYS 4020.0008
TYR 4030.0009
LEU 4040.0016
ASP 4050.0020
LEU 4060.0026
SER 4070.0031
PHE 4080.0035
ASN 4090.0035
GLY 4100.0038
VAL 4110.0038
ILE 4120.0039
THR 4130.0042
MET 4140.0037
SER 4150.0039
SER 4160.0033
ASN 4170.0030
PHE 4180.0025
LEU 4190.0029
GLY 4200.0028
LEU 4210.0020
GLU 4220.0019
GLN 4230.0012
LEU 4240.0010
GLU 4250.0007
HIS 4260.0016
LEU 4270.0023
ASP 4280.0025
PHE 4290.0027
GLN 4300.0029
HIS 4310.0031
SER 4320.0035
ASN 4330.0039
LEU 4340.0036
LYS 4350.0038
GLN 4360.0038
MET 4370.0032
SER 4380.0033
GLU 4390.0033
PHE 4400.0026
SER 4410.0020
VAL 4420.0027
PHE 4430.0020
LEU 4440.0015
SER 4450.0013
LEU 4460.0010
ARG 4470.0004
ASN 4480.0008
LEU 4490.0017
ILE 4500.0025
TYR 4510.0033
LEU 4520.0032
ASP 4530.0032
ILE 4540.0032
SER 4550.0031
HIS 4560.0032
THR 4570.0031
HIS 4580.0030
THR 4590.0030
ARG 4600.0029
VAL 4610.0029
ALA 4620.0025
PHE 4630.0022
ASN 4640.0020
GLY 4650.0020
ILE 4660.0025
PHE 4670.0024
ASN 4680.0018
GLY 4690.0017
LEU 4700.0022
SER 4710.0021
SER 4720.0028
LEU 4730.0031
GLU 4740.0037
VAL 4750.0041
LEU 4760.0038
LYS 4770.0037
MET 4780.0035
ALA 4790.0035
GLY 4800.0035
ASN 4810.0034
SER 4820.0030
PHE 4830.0026
GLN 4840.0026
GLU 4850.0023
ASN 4860.0022
PHE 4870.0021
LEU 4880.0023
PRO 4890.0023
ASP 4900.0024
ILE 4910.0029
PHE 4920.0030
THR 4930.0027
GLU 4940.0029
LEU 4950.0033
ARG 4960.0034
ASN 4970.0040
LEU 4980.0040
THR 4990.0046
PHE 5000.0046
LEU 5010.0040
ASP 5020.0036
LEU 5030.0033
SER 5040.0032
GLN 5050.0032
CYS 5060.0033
GLN 5070.0024
LEU 5080.0021
GLU 5090.0018
GLN 5100.0016
LEU 5110.0016
SER 5120.0018
PRO 5130.0019
THR 5140.0024
ALA 5150.0026
PHE 5160.0031
ASN 5170.0031
SER 5180.0036
LEU 5190.0040
SER 5200.0044
SER 5210.0049
LEU 5220.0046
GLN 5230.0050
VAL 5240.0045
LEU 5250.0036
ASN 5260.0035
MET 5270.0024
SER 5280.0024
HIS 5290.0027
ASN 5300.0025
ASN 5310.0023
PHE 5320.0017
PHE 5330.0019
SER 5340.0015
LEU 5350.0012
ASP 5360.0014
THR 5370.0023
PHE 5380.0027
PRO 5390.0026
TYR 5400.0032
LYS 5410.0040
CYS 5420.0042
LEU 5430.0043
ASN 5440.0053
SER 5450.0055
LEU 5460.0045
GLN 5470.0043
VAL 5480.0034
LEU 5490.0026
ASP 5500.0023
TYR 5510.0015
SER 5520.0016
LEU 5530.0024
ASN 5540.0023
HIS 5550.0025
ILE 5560.0018
MET 5570.0025
THR 5580.0025
SER 5590.0024
LYS 5600.0027
LYS 5610.0027
GLN 5620.0036
GLU 5630.0035
LEU 5640.0030
GLN 5650.0039
HIS 5660.0038
PHE 5670.0033
PRO 5680.0043
SER 5690.0051
SER 5700.0050
LEU 5710.0037
ALA 5720.0021
PHE 5730.0013
LEU 5740.0008
ASN 5750.0010
LEU 5760.0013
THR 5770.0022
GLN 5780.0028
ASN 5790.0026
ASP 5800.0030
PHE 5810.0029
ALA 5820.0024
CYS 5830.0025
THR 5840.0018
CYS 5850.0025
GLU 5860.0019
HIS 5870.0019
GLN 5880.0022
SER 5890.0022
PHE 5900.0024
LEU 5910.0027
GLN 5920.0029
TRP 5930.0024
ILE 5940.0026
LYS 5950.0032
ASP 5960.0029
GLN 5970.0024
ARG 5980.0026
GLN 5990.0021
LEU 6000.0014
LEU 6010.0017
VAL 6020.0021
GLU 6030.0028
VAL 6040.0035
GLU 6050.0040
ARG 6060.0039
MET 6070.0034
GLU 6080.0038
CYS 6090.0035
ALA 6100.0036
THR 6110.0032
PRO 6120.0027
SER 6130.0035
ASP 6140.0037
LYS 6150.0034
GLN 6160.0035
GLY 6170.0048
MET 6180.0047
PRO 6190.0043
VAL 6200.0037
LEU 6210.0039
SER 6220.0058
LEU 6230.0033
ASN 6240.0020
ILE 6250.0029
THR 6260.0036
CYS 6270.0432
GLU 10.0219
ALA 20.0075
ALA 30.0127
ALA 40.0086
LYS 50.0085
MET 60.0136
GLN 70.0112
ARG 80.0089
LEU 90.0145
VAL 100.0159
LEU 110.0118
LEU 120.0095
LEU 130.0043
ALA 140.0056
ILE 150.0037
SER 160.0139
LEU 170.0214
LEU 180.0139
LEU 190.0106
TYR 200.0264
GLN 210.0232
ASP 220.0105
LEU 230.0115
PRO 240.0134
VAL 250.0265
ARG 260.0041
SER 270.0032
GLU 280.0013
PHE 290.0033
GLU 300.0037
LEU 310.0036
ASP 320.0038
ARG 330.0035
ILE 340.0032
CYS 350.0032
GLY 360.0017
TYR 370.0012
GLY 380.0015
THR 390.0015
ALA 400.0024
ARG 410.0031
CYS 420.0042
ARG 430.0048
LYS 440.0060
LYS 450.0060
CYS 460.0041
ARG 470.0036
SER 480.0043
GLN 490.0039
GLU 500.0038
TYR 510.0056
ARG 520.0058
ILE 530.0050
GLY 540.0058
ARG 550.0066
CYS 560.0060
PRO 570.0066
ASN 580.0071
THR 590.0073
TYR 600.0067
ALA 610.0057
CYS 620.0044
CYS 630.0037
LEU 640.0032
ARG 650.0034
LYS 660.0042
TRP 670.0054
ASP 680.0044
GLU 690.0047
SER 700.0045
LEU 710.0059
LEU 720.0062
ASN 730.0046
ARG 740.0055
THR 750.0071
LYS 760.0051
PRO 770.0052
GLU 780.0042
ALA 790.0047
ALA 800.0065
ALA 810.0084
LYS 820.0078
LYS 830.0058
GLU 840.0057
MET 850.0070
ASN 860.0099
LEU 870.0091
SER 880.0094
VAL 890.0102
GLY 900.0107
LEU 910.0124
GLY 920.0114
GLY 930.0150
GLY 940.0160
SER 950.0180
ASN 960.0142
LEU 970.0134
SER 980.0110
VAL 990.0100
GLY 1000.0089
LEU 1010.0105
GLY 1020.0114
GLU 1030.0115
ILE 1040.0174
GLY 1050.0198
GLY 1060.0086
GLY 1070.0087
SER 1080.0088
LYS 1090.0120
LEU 1100.0163
LEU 1110.0133
ASP 1120.0124
ILE 1130.0105
ASN 1140.0158
LEU 1150.0152
GLY 1160.0209
ARG 1170.0357
GLY 1180.0395
GLY 1190.0341
GLY 1200.0223
SER 1210.0149
MET 1220.0130
VAL 1230.0090
ASP 1240.0081
LEU 1250.0068
THR 1260.0072
PHE 1270.0069
GLY 1280.0073
GLY 1290.0067
VAL 1300.0066
GLY 1310.0110
GLY 1320.0109
GLY 1330.0090
SER 1340.0063
THR 1350.0037
PHE 1360.0020
THR 1370.0031
PHE 1380.0023
PHE 1390.0053
PRO 1400.0049
LEU 1410.0066
VAL 1420.0037
ILE 1430.0026
GLY 1440.0069
GLY 1450.0106
GLY 1460.0148
SER 1470.0150
ASP 1480.0151
ALA 1490.0129
MET 1500.0090
TYR 1510.0073
LEU 1520.0056
GLY 1530.0063
PHE 1540.0047
ALA 1550.0055
ALA 1560.0027
GLY 1570.0029
GLY 1580.0072
GLY 1590.0112
SER 1600.0147
ALA 1610.0084
GLY 1620.0036
GLY 1630.0035
GLU 1640.0062
ASN 1650.0040
HIS 1660.0064
VAL 1670.0079
ALA 1680.0091
PHE 1690.0118
GLY 1700.0141
PRO 1710.0201
GLY 1720.0219
PRO 1730.0227
GLY 1740.0202
VAL 1750.0175
ASP 1760.0049
LEU 1770.0070
THR 1780.0088
PHE 1790.0161
GLY 1800.0253
GLY 1810.0468
VAL 1820.0446
GLN 1830.0299
PHE 1840.0275
ALA 1850.0203
MET 1860.0271
VAL 1870.0209
ASN 1880.0157
ASN 1890.0266
GLY 1900.0179
PRO 1910.0508
GLY 1920.0372
PRO 1930.0310
GLY 1940.0341
GLU 1950.0170
SER 1960.1049
PHE 1970.0331
THR 1980.0583
ALA 1990.0636
GLN 2000.0406
PRO 2010.0551
ALA 2020.0339
ASP 2030.0461
MET 2040.0402
GLN 2050.0223
ALA 2060.1180
GLY 2070.0744
ILE 2080.0519
LYS 2090.0056
GLY 2100.0429
PRO 2110.0673
GLY 2120.0316
PRO 2130.0322
GLY 2140.0375
GLY 2150.0308
SER 2160.0259
ILE 2170.0324
GLN 2180.0225
VAL 2190.0201
ILE 2200.0212
ASN 2210.0134
GLY 2220.0123
SER 2230.0154
THR 2240.0138
ILE 2250.0135
GLY 2260.0109
THR 2270.0101
GLY 2280.0117
SER 2290.0120
LYS 2300.0126
LYS 2310.0109
THR 2320.0116
ILE 2330.0068
LEU 2340.0060
ILE 2350.0113
TYR 2360.0090
SER 2370.0063
ILE 2380.0039
ILE 2390.0027
GLY 2400.0020
VAL 2410.0020
LYS 2420.0025
LYS 2430.0024
GLY 2440.0022
THR 2450.0022
LEU 2460.0026
ALA 2470.0031
TRP 2480.0050
ALA 2490.0063
ARG 2500.0083
THR 2510.0095
GLY 2520.0090
PHE 2530.0045
SER 2540.0056
PRO 2550.0101
ALA 2560.0054
LYS 2570.0061
LYS 2580.0056
LEU 2590.0038
ASN 2600.0034
ALA 2610.0308
GLY 2620.0207
VAL 2630.0207
VAL 2640.0238
ARG 2650.0106
VAL 2660.0118
PHE 2670.0100
PHE 2680.0109
LEU 2690.0085
ASN 2700.0087
GLN 2710.0047
LYS 2720.0039
LYS 2730.0058
ALA 2740.0049
LYS 2750.0027
ASP 2760.0047
VAL 2770.0049
LEU 2780.0029
ARG 2790.0030
LYS 2800.0050
THR 2810.0072
SER 2820.0066
ARG 2830.0049
PRO 2840.0090
MET 2850.0100
VAL 2860.0066
ASP 2870.0056
LEU 2880.0040
THR 2890.0031
PHE 2900.0013
GLY 2910.0018
GLY 2920.0031

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.