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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 79  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0664
GLU 270.0045
PRO 280.0036
CYS 290.0023
VAL 300.0029
GLU 310.0046
VAL 320.0070
VAL 330.0084
PRO 340.0080
ASN 350.0075
ILE 360.0073
THR 370.0058
TYR 380.0036
GLN 390.0034
CYS 400.0027
MET 410.0048
GLU 420.0062
LEU 430.0058
ASN 440.0067
PHE 450.0052
TYR 460.0060
LYS 470.0049
ILE 480.0031
PRO 490.0032
ASP 500.0044
ASN 510.0046
LEU 520.0036
PRO 530.0048
PHE 540.0049
SER 550.0056
THR 560.0043
LYS 570.0046
ASN 580.0041
LEU 590.0029
ASP 600.0032
LEU 610.0031
SER 620.0042
PHE 630.0051
ASN 640.0043
PRO 650.0049
LEU 660.0035
ARG 670.0027
HIS 680.0024
LEU 690.0020
GLY 700.0018
SER 710.0015
TYR 720.0016
SER 730.0017
PHE 740.0016
PHE 750.0020
SER 760.0028
PHE 770.0021
PRO 780.0025
GLU 790.0030
LEU 800.0026
GLN 810.0032
VAL 820.0028
LEU 830.0025
ASP 840.0024
LEU 850.0025
SER 860.0029
ARG 870.0033
CYS 880.0027
GLU 890.0028
ILE 900.0023
GLN 910.0024
THR 920.0021
ILE 930.0020
GLU 940.0019
ASP 950.0018
GLY 960.0019
ALA 970.0017
TYR 980.0017
GLN 990.0019
SER 1000.0019
LEU 1010.0020
SER 1020.0024
HIS 1030.0023
LEU 1040.0019
SER 1050.0018
THR 1060.0014
LEU 1070.0016
ILE 1080.0016
LEU 1090.0014
THR 1100.0017
GLY 1110.0018
ASN 1120.0019
PRO 1130.0018
ILE 1140.0019
GLN 1150.0019
SER 1160.0021
LEU 1170.0023
ALA 1180.0024
LEU 1190.0026
GLY 1200.0024
ALA 1210.0020
PHE 1220.0018
SER 1230.0022
GLY 1240.0023
LEU 1250.0020
SER 1260.0026
SER 1270.0021
LEU 1280.0012
GLN 1290.0012
LYS 1300.0014
LEU 1310.0012
VAL 1320.0021
ALA 1330.0019
VAL 1340.0019
GLU 1350.0019
THR 1360.0019
ASN 1370.0036
LEU 1380.0034
ALA 1390.0038
SER 1400.0036
LEU 1410.0033
GLU 1420.0037
ASN 1430.0037
PHE 1440.0030
PRO 1450.0028
ILE 1460.0023
GLY 1470.0023
HIS 1480.0024
LEU 1490.0017
LYS 1500.0020
THR 1510.0017
LEU 1520.0010
LYS 1530.0016
GLU 1540.0021
LEU 1550.0022
ASN 1560.0030
VAL 1570.0027
ALA 1580.0034
HIS 1590.0043
ASN 1600.0042
LEU 1610.0046
ILE 1620.0046
GLN 1630.0048
SER 1640.0043
PHE 1650.0036
LYS 1660.0037
LEU 1670.0034
PRO 1680.0036
GLU 1690.0035
TYR 1700.0033
PHE 1710.0029
SER 1720.0026
ASN 1730.0025
LEU 1740.0019
THR 1750.0019
ASN 1760.0016
LEU 1770.0016
GLU 1780.0019
HIS 1790.0025
LEU 1800.0027
ASP 1810.0034
LEU 1820.0035
SER 1830.0040
SER 1840.0047
ASN 1850.0047
LYS 1860.0049
ILE 1870.0039
GLN 1880.0036
SER 1890.0033
ILE 1900.0031
TYR 1910.0034
CYS 1920.0032
THR 1930.0037
ASP 1940.0036
LEU 1950.0032
ARG 1960.0035
VAL 1970.0033
LEU 1980.0028
HIS 1990.0029
GLN 2000.0032
MET 2010.0029
PRO 2020.0024
LEU 2030.0021
LEU 2040.0019
ASN 2050.0016
LEU 2060.0019
SER 2070.0026
LEU 2080.0027
ASP 2090.0030
LEU 2100.0030
SER 2110.0031
LEU 2120.0031
ASN 2130.0030
PRO 2140.0028
MET 2150.0025
ASN 2160.0024
PHE 2170.0023
ILE 2180.0023
GLN 2190.0027
PRO 2200.0025
GLY 2210.0027
ALA 2220.0028
PHE 2230.0023
LYS 2240.0026
GLU 2250.0028
ILE 2260.0025
ARG 2270.0016
LEU 2280.0017
HIS 2290.0017
LYS 2300.0017
LEU 2310.0017
THR 2320.0020
LEU 2330.0016
ARG 2340.0013
ASN 2350.0011
ASN 2360.0011
PHE 2370.0012
ASP 2380.0014
SER 2390.0020
LEU 2400.0022
ASN 2410.0024
VAL 2420.0013
MET 2430.0012
LYS 2440.0016
THR 2450.0018
CYS 2460.0015
ILE 2470.0011
GLN 2480.0015
GLY 2490.0016
LEU 2500.0014
ALA 2510.0017
GLY 2520.0016
LEU 2530.0012
GLU 2540.0010
VAL 2550.0009
HIS 2560.0012
ARG 2570.0012
LEU 2580.0010
VAL 2590.0011
LEU 2600.0010
GLY 2610.0012
GLU 2620.0014
PHE 2630.0024
ARG 2640.0039
ASN 2650.0038
GLU 2660.0026
GLY 2670.0029
ASN 2680.0027
LEU 2690.0026
GLU 2700.0033
LYS 2710.0029
PHE 2720.0024
ASP 2730.0024
LYS 2740.0020
SER 2750.0020
ALA 2760.0020
LEU 2770.0017
GLU 2780.0017
GLY 2790.0014
LEU 2800.0012
CYS 2810.0012
ASN 2820.0012
LEU 2830.0007
THR 2840.0007
ILE 2850.0010
GLU 2860.0014
GLU 2870.0016
PHE 2880.0015
ARG 2890.0016
LEU 2900.0017
ALA 2910.0018
TYR 2920.0024
LEU 2930.0025
ASP 2940.0029
TYR 2950.0028
TYR 2960.0027
LEU 2970.0020
ASP 2980.0018
GLY 2990.0017
ILE 3000.0018
ILE 3010.0019
ASP 3020.0018
LEU 3030.0019
PHE 3040.0018
ASN 3050.0019
CYS 3060.0021
LEU 3070.0020
THR 3080.0022
ASN 3090.0025
VAL 3100.0022
SER 3110.0021
SER 3120.0020
PHE 3130.0018
SER 3140.0017
LEU 3150.0018
VAL 3160.0021
SER 3170.0026
VAL 3180.0022
THR 3190.0022
ILE 3200.0019
GLU 3210.0021
ARG 3220.0023
VAL 3230.0024
LYS 3240.0030
ASP 3250.0025
PHE 3260.0023
SER 3270.0031
TYR 3280.0031
ASN 3290.0032
PHE 3300.0027
GLY 3310.0029
TRP 3320.0023
GLN 3330.0022
HIS 3340.0017
LEU 3350.0014
GLU 3360.0013
LEU 3370.0017
VAL 3380.0025
ASN 3390.0033
CYS 3400.0027
LYS 3410.0031
PHE 3420.0031
GLY 3430.0036
GLN 3440.0039
PHE 3450.0036
PRO 3460.0029
THR 3470.0032
LEU 3480.0025
LYS 3490.0030
LEU 3500.0025
LYS 3510.0031
SER 3520.0026
LEU 3530.0018
LYS 3540.0014
ARG 3550.0009
LEU 3560.0010
THR 3570.0017
PHE 3580.0024
THR 3590.0033
SER 3600.0042
ASN 3610.0039
LYS 3620.0048
GLY 3630.0046
GLY 3640.0048
ASN 3650.0048
ALA 3660.0050
PHE 3670.0047
SER 3680.0044
GLU 3690.0041
VAL 3700.0029
ASP 3710.0027
LEU 3720.0016
PRO 3730.0020
SER 3740.0015
LEU 3750.0012
GLU 3760.0012
PHE 3770.0010
LEU 3780.0018
ASP 3790.0026
LEU 3800.0033
SER 3810.0040
ARG 3820.0046
ASN 3830.0046
GLY 3840.0048
LEU 3850.0046
SER 3860.0048
PHE 3870.0046
LYS 3880.0048
GLY 3890.0045
CYS 3900.0040
CYS 3910.0034
SER 3920.0036
GLN 3930.0030
SER 3940.0038
ASP 3950.0037
PHE 3960.0029
GLY 3970.0028
THR 3980.0024
ILE 3990.0025
SER 4000.0017
LEU 4010.0017
LYS 4020.0016
TYR 4030.0021
LEU 4040.0026
ASP 4050.0032
LEU 4060.0038
SER 4070.0043
PHE 4080.0044
ASN 4090.0045
GLY 4100.0045
VAL 4110.0044
ILE 4120.0043
THR 4130.0044
MET 4140.0037
SER 4150.0037
SER 4160.0031
ASN 4170.0029
PHE 4180.0026
LEU 4190.0027
GLY 4200.0023
LEU 4210.0020
GLU 4220.0015
GLN 4230.0012
LEU 4240.0017
GLU 4250.0018
HIS 4260.0026
LEU 4270.0030
ASP 4280.0033
PHE 4290.0034
GLN 4300.0036
HIS 4310.0039
SER 4320.0040
ASN 4330.0040
LEU 4340.0036
LYS 4350.0037
GLN 4360.0035
MET 4370.0029
SER 4380.0029
GLU 4390.0033
PHE 4400.0026
SER 4410.0018
VAL 4420.0026
PHE 4430.0019
LEU 4440.0016
SER 4450.0014
LEU 4460.0012
ARG 4470.0009
ASN 4480.0014
LEU 4490.0018
ILE 4500.0026
TYR 4510.0032
LEU 4520.0027
ASP 4530.0029
ILE 4540.0027
SER 4550.0028
HIS 4560.0031
THR 4570.0031
HIS 4580.0027
THR 4590.0026
ARG 4600.0021
VAL 4610.0020
ALA 4620.0019
PHE 4630.0016
ASN 4640.0012
GLY 4650.0011
ILE 4660.0013
PHE 4670.0010
ASN 4680.0009
GLY 4690.0010
LEU 4700.0015
SER 4710.0021
SER 4720.0028
LEU 4730.0025
GLU 4740.0034
VAL 4750.0034
LEU 4760.0026
LYS 4770.0025
MET 4780.0021
ALA 4790.0022
GLY 4800.0023
ASN 4810.0021
SER 4820.0016
PHE 4830.0009
GLN 4840.0015
GLU 4850.0016
ASN 4860.0007
PHE 4870.0007
LEU 4880.0008
PRO 4890.0010
ASP 4900.0016
ILE 4910.0013
PHE 4920.0019
THR 4930.0024
GLU 4940.0025
LEU 4950.0027
ARG 4960.0035
ASN 4970.0040
LEU 4980.0034
THR 4990.0040
PHE 5000.0036
LEU 5010.0027
ASP 5020.0021
LEU 5030.0015
SER 5040.0017
GLN 5050.0017
CYS 5060.0014
GLN 5070.0012
LEU 5080.0008
GLU 5090.0007
GLN 5100.0009
LEU 5110.0012
SER 5120.0017
PRO 5130.0021
THR 5140.0025
ALA 5150.0022
PHE 5160.0025
ASN 5170.0032
SER 5180.0035
LEU 5190.0035
SER 5200.0041
SER 5210.0043
LEU 5220.0036
GLN 5230.0037
VAL 5240.0032
LEU 5250.0025
ASN 5260.0022
MET 5270.0014
SER 5280.0015
HIS 5290.0016
ASN 5300.0014
ASN 5310.0013
PHE 5320.0016
PHE 5330.0014
SER 5340.0011
LEU 5350.0010
ASP 5360.0010
THR 5370.0013
PHE 5380.0018
PRO 5390.0020
TYR 5400.0019
LYS 5410.0021
CYS 5420.0031
LEU 5430.0030
ASN 5440.0035
SER 5450.0035
LEU 5460.0028
GLN 5470.0021
VAL 5480.0018
LEU 5490.0015
ASP 5500.0015
TYR 5510.0012
SER 5520.0013
LEU 5530.0019
ASN 5540.0020
HIS 5550.0022
ILE 5560.0017
MET 5570.0021
THR 5580.0013
SER 5590.0008
LYS 5600.0009
LYS 5610.0011
GLN 5620.0012
GLU 5630.0014
LEU 5640.0007
GLN 5650.0012
HIS 5660.0012
PHE 5670.0012
PRO 5680.0016
SER 5690.0018
SER 5700.0017
LEU 5710.0010
ALA 5720.0008
PHE 5730.0011
LEU 5740.0011
ASN 5750.0015
LEU 5760.0015
THR 5770.0023
GLN 5780.0027
ASN 5790.0025
ASP 5800.0030
PHE 5810.0027
ALA 5820.0031
CYS 5830.0028
THR 5840.0026
CYS 5850.0020
GLU 5860.0026
HIS 5870.0015
GLN 5880.0016
SER 5890.0021
PHE 5900.0016
LEU 5910.0021
GLN 5920.0028
TRP 5930.0025
ILE 5940.0027
LYS 5950.0037
ASP 5960.0038
GLN 5970.0033
ARG 5980.0038
GLN 5990.0039
LEU 6000.0029
LEU 6010.0031
VAL 6020.0036
GLU 6030.0037
VAL 6040.0040
GLU 6050.0041
ARG 6060.0041
MET 6070.0037
GLU 6080.0041
CYS 6090.0038
ALA 6100.0045
THR 6110.0047
PRO 6120.0052
SER 6130.0062
ASP 6140.0060
LYS 6150.0045
GLN 6160.0046
GLY 6170.0057
MET 6180.0052
PRO 6190.0047
VAL 6200.0036
LEU 6210.0041
SER 6220.0053
LEU 6230.0039
ASN 6240.0035
ILE 6250.0026
THR 6260.0025
CYS 6270.0076
GLU 10.0085
ALA 20.0032
ALA 30.0052
ALA 40.0030
LYS 50.0037
MET 60.0049
GLN 70.0039
ARG 80.0041
LEU 90.0061
VAL 100.0063
LEU 110.0050
LEU 120.0038
LEU 130.0021
ALA 140.0028
ILE 150.0019
SER 160.0051
LEU 170.0076
LEU 180.0048
LEU 190.0047
TYR 200.0096
GLN 210.0077
ASP 220.0035
LEU 230.0046
PRO 240.0044
VAL 250.0084
ARG 260.0025
SER 270.0024
GLU 280.0025
PHE 290.0032
GLU 300.0027
LEU 310.0029
ASP 320.0031
ARG 330.0025
ILE 340.0022
CYS 350.0025
GLY 360.0008
TYR 370.0006
GLY 380.0005
THR 390.0009
ALA 400.0016
ARG 410.0021
CYS 420.0038
ARG 430.0050
LYS 440.0068
LYS 450.0069
CYS 460.0044
ARG 470.0042
SER 480.0052
GLN 490.0047
GLU 500.0043
TYR 510.0057
ARG 520.0054
ILE 530.0037
GLY 540.0049
ARG 550.0063
CYS 560.0062
PRO 570.0076
ASN 580.0082
THR 590.0085
TYR 600.0074
ALA 610.0053
CYS 620.0037
CYS 630.0034
LEU 640.0029
ARG 650.0037
LYS 660.0055
TRP 670.0061
ASP 680.0050
GLU 690.0052
SER 700.0046
LEU 710.0055
LEU 720.0045
ASN 730.0024
ARG 740.0033
THR 750.0036
LYS 760.0091
PRO 770.0181
GLU 780.0178
ALA 790.0289
ALA 800.0338
ALA 810.0501
LYS 820.0424
LYS 830.0310
GLU 840.0234
MET 850.0112
ASN 860.0039
LEU 870.0062
SER 880.0067
VAL 890.0093
GLY 900.0105
LEU 910.0102
GLY 920.0122
GLY 930.0211
GLY 940.0212
SER 950.0190
ASN 960.0094
LEU 970.0100
SER 980.0061
VAL 990.0101
GLY 1000.0116
LEU 1010.0193
GLY 1020.0451
GLU 1030.0456
ILE 1040.0490
GLY 1050.0474
GLY 1060.0472
GLY 1070.0462
SER 1080.0452
LYS 1090.0340
LEU 1100.0355
LEU 1110.0296
ASP 1120.0273
ILE 1130.0199
ASN 1140.0230
LEU 1150.0180
GLY 1160.0267
ARG 1170.0571
GLY 1180.0566
GLY 1190.0523
GLY 1200.0314
SER 1210.0108
MET 1220.0093
VAL 1230.0064
ASP 1240.0079
LEU 1250.0098
THR 1260.0083
PHE 1270.0084
GLY 1280.0076
GLY 1290.0086
VAL 1300.0082
GLY 1310.0529
GLY 1320.0408
GLY 1330.0292
SER 1340.0170
THR 1350.0096
PHE 1360.0035
THR 1370.0065
PHE 1380.0048
PHE 1390.0084
PRO 1400.0067
LEU 1410.0053
VAL 1420.0094
ILE 1430.0131
GLY 1440.0221
GLY 1450.0270
GLY 1460.0065
SER 1470.0060
ASP 1480.0086
ALA 1490.0078
MET 1500.0060
TYR 1510.0013
LEU 1520.0024
GLY 1530.0056
PHE 1540.0064
ALA 1550.0109
ALA 1560.0179
GLY 1570.0141
GLY 1580.0084
GLY 1590.0253
SER 1600.0410
ALA 1610.0343
GLY 1620.0313
GLY 1630.0227
GLU 1640.0155
ASN 1650.0079
HIS 1660.0080
VAL 1670.0084
ALA 1680.0110
PHE 1690.0148
GLY 1700.0182
PRO 1710.0235
GLY 1720.0243
PRO 1730.0249
GLY 1740.0223
VAL 1750.0193
ASP 1760.0107
LEU 1770.0031
THR 1780.0159
PHE 1790.0247
GLY 1800.0404
GLY 1810.0638
VAL 1820.0535
GLN 1830.0319
PHE 1840.0213
ALA 1850.0094
MET 1860.0294
VAL 1870.0237
ASN 1880.0139
ASN 1890.0131
GLY 1900.0087
PRO 1910.0459
GLY 1920.0331
PRO 1930.0354
GLY 1940.0387
GLU 1950.0193
SER 1960.0338
PHE 1970.0438
THR 1980.0209
ALA 1990.0216
GLN 2000.0337
PRO 2010.0298
ALA 2020.0299
ASP 2030.0296
MET 2040.0279
GLN 2050.0314
ALA 2060.0497
GLY 2070.0350
ILE 2080.0239
LYS 2090.0059
GLY 2100.0193
PRO 2110.0303
GLY 2120.0265
PRO 2130.0169
GLY 2140.0333
GLY 2150.0258
SER 2160.0149
ILE 2170.0067
GLN 2180.0118
VAL 2190.0243
ILE 2200.0226
ASN 2210.0147
GLY 2220.0119
SER 2230.0229
THR 2240.0289
ILE 2250.0280
GLY 2260.0223
THR 2270.0212
GLY 2280.0293
SER 2290.0357
LYS 2300.0263
LYS 2310.0144
THR 2320.0134
ILE 2330.0107
LEU 2340.0098
ILE 2350.0158
TYR 2360.0127
SER 2370.0111
ILE 2380.0101
ILE 2390.0103
GLY 2400.0099
VAL 2410.0025
LYS 2420.0023
LYS 2430.0027
GLY 2440.0036
THR 2450.0034
LEU 2460.0078
ALA 2470.0099
TRP 2480.0122
ALA 2490.0147
ARG 2500.0172
THR 2510.0243
GLY 2520.0205
PHE 2530.0133
SER 2540.0116
PRO 2550.0142
ALA 2560.0067
LYS 2570.0113
LYS 2580.0068
LEU 2590.0066
ASN 2600.0068
ALA 2610.0664
GLY 2620.0460
VAL 2630.0433
VAL 2640.0435
ARG 2650.0206
VAL 2660.0069
PHE 2670.0078
PHE 2680.0034
LEU 2690.0020
ASN 2700.0085
GLN 2710.0037
LYS 2720.0032
LYS 2730.0022
ALA 2740.0019
LYS 2750.0018
ASP 2760.0017
VAL 2770.0020
LEU 2780.0014
ARG 2790.0013
LYS 2800.0021
THR 2810.0054
SER 2820.0100
ARG 2830.0087
PRO 2840.0167
MET 2850.0193
VAL 2860.0127
ASP 2870.0116
LEU 2880.0075
THR 2890.0067
PHE 2900.0029
GLY 2910.0048
GLY 2920.0091

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.