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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 80  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0857
GLU 270.0077
PRO 280.0059
CYS 290.0071
VAL 300.0108
GLU 310.0133
VAL 320.0168
VAL 330.0175
PRO 340.0163
ASN 350.0130
ILE 360.0128
THR 370.0118
TYR 380.0088
GLN 390.0083
CYS 400.0050
MET 410.0070
GLU 420.0076
LEU 430.0061
ASN 440.0067
PHE 450.0051
TYR 460.0060
LYS 470.0046
ILE 480.0032
PRO 490.0020
ASP 500.0029
ASN 510.0051
LEU 520.0054
PRO 530.0064
PHE 540.0047
SER 550.0066
THR 560.0068
LYS 570.0073
ASN 580.0074
LEU 590.0059
ASP 600.0062
LEU 610.0052
SER 620.0060
PHE 630.0067
ASN 640.0063
PRO 650.0066
LEU 660.0057
ARG 670.0048
HIS 680.0047
LEU 690.0044
GLY 700.0047
SER 710.0044
TYR 720.0032
SER 730.0032
PHE 740.0033
PHE 750.0029
SER 760.0028
PHE 770.0027
PRO 780.0028
GLU 790.0036
LEU 800.0042
GLN 810.0053
VAL 820.0051
LEU 830.0047
ASP 840.0042
LEU 850.0040
SER 860.0037
ARG 870.0035
CYS 880.0042
GLU 890.0038
ILE 900.0038
GLN 910.0037
THR 920.0035
ILE 930.0033
GLU 940.0039
ASP 950.0037
GLY 960.0037
ALA 970.0034
TYR 980.0036
GLN 990.0039
SER 1000.0041
LEU 1010.0040
SER 1020.0046
HIS 1030.0044
LEU 1040.0036
SER 1050.0031
THR 1060.0025
LEU 1070.0022
ILE 1080.0018
LEU 1090.0009
THR 1100.0017
GLY 1110.0018
ASN 1120.0011
PRO 1130.0009
ILE 1140.0017
GLN 1150.0032
SER 1160.0040
LEU 1170.0019
ALA 1180.0029
LEU 1190.0033
GLY 1200.0033
ALA 1210.0023
PHE 1220.0015
SER 1230.0028
GLY 1240.0035
LEU 1250.0026
SER 1260.0033
SER 1270.0026
LEU 1280.0014
GLN 1290.0025
LYS 1300.0033
LEU 1310.0030
VAL 1320.0034
ALA 1330.0034
VAL 1340.0045
GLU 1350.0048
THR 1360.0040
ASN 1370.0068
LEU 1380.0066
ALA 1390.0070
SER 1400.0067
LEU 1410.0062
GLU 1420.0062
ASN 1430.0062
PHE 1440.0052
PRO 1450.0043
ILE 1460.0034
GLY 1470.0030
HIS 1480.0023
LEU 1490.0017
LYS 1500.0012
THR 1510.0010
LEU 1520.0025
LYS 1530.0035
GLU 1540.0047
LEU 1550.0050
ASN 1560.0062
VAL 1570.0058
ALA 1580.0069
HIS 1590.0083
ASN 1600.0082
LEU 1610.0090
ILE 1620.0082
GLN 1630.0082
SER 1640.0074
PHE 1650.0064
LYS 1660.0067
LEU 1670.0061
PRO 1680.0062
GLU 1690.0058
TYR 1700.0054
PHE 1710.0050
SER 1720.0041
ASN 1730.0036
LEU 1740.0034
THR 1750.0025
ASN 1760.0024
LEU 1770.0040
GLU 1780.0041
HIS 1790.0051
LEU 1800.0058
ASP 1810.0067
LEU 1820.0065
SER 1830.0067
SER 1840.0077
ASN 1850.0080
LYS 1860.0082
ILE 1870.0059
GLN 1880.0051
SER 1890.0049
ILE 1900.0048
TYR 1910.0059
CYS 1920.0058
THR 1930.0068
ASP 1940.0063
LEU 1950.0054
ARG 1960.0062
VAL 1970.0057
LEU 1980.0046
HIS 1990.0047
GLN 2000.0052
MET 2010.0043
PRO 2020.0038
LEU 2030.0034
LEU 2040.0038
ASN 2050.0033
LEU 2060.0039
SER 2070.0047
LEU 2080.0046
ASP 2090.0046
LEU 2100.0042
SER 2110.0040
LEU 2120.0039
ASN 2130.0036
PRO 2140.0026
MET 2150.0023
ASN 2160.0022
PHE 2170.0028
ILE 2180.0031
GLN 2190.0046
PRO 2200.0048
GLY 2210.0053
ALA 2220.0048
PHE 2230.0037
LYS 2240.0045
GLU 2250.0047
ILE 2260.0041
ARG 2270.0029
LEU 2280.0029
HIS 2290.0027
LYS 2300.0026
LEU 2310.0024
THR 2320.0032
LEU 2330.0018
ARG 2340.0031
ASN 2350.0035
ASN 2360.0023
PHE 2370.0039
ASP 2380.0055
SER 2390.0064
LEU 2400.0064
ASN 2410.0064
VAL 2420.0038
MET 2430.0035
LYS 2440.0042
THR 2450.0037
CYS 2460.0021
ILE 2470.0019
GLN 2480.0031
GLY 2490.0026
LEU 2500.0020
ALA 2510.0034
GLY 2520.0033
LEU 2530.0024
GLU 2540.0020
VAL 2550.0013
HIS 2560.0014
ARG 2570.0016
LEU 2580.0013
VAL 2590.0021
LEU 2600.0024
GLY 2610.0033
GLU 2620.0054
PHE 2630.0083
ARG 2640.0115
ASN 2650.0126
GLU 2660.0100
GLY 2670.0100
ASN 2680.0089
LEU 2690.0080
GLU 2700.0093
LYS 2710.0081
PHE 2720.0062
ASP 2730.0058
LYS 2740.0047
SER 2750.0049
ALA 2760.0049
LEU 2770.0036
GLU 2780.0037
GLY 2790.0031
LEU 2800.0024
CYS 2810.0026
ASN 2820.0032
LEU 2830.0020
THR 2840.0015
ILE 2850.0010
GLU 2860.0011
GLU 2870.0017
PHE 2880.0021
ARG 2890.0028
LEU 2900.0034
ALA 2910.0041
TYR 2920.0064
LEU 2930.0061
ASP 2940.0074
TYR 2950.0065
TYR 2960.0058
LEU 2970.0035
ASP 2980.0025
GLY 2990.0019
ILE 3000.0020
ILE 3010.0010
ASP 3020.0021
LEU 3030.0028
PHE 3040.0024
ASN 3050.0017
CYS 3060.0021
LEU 3070.0019
THR 3080.0018
ASN 3090.0017
VAL 3100.0018
SER 3110.0017
SER 3120.0018
PHE 3130.0020
SER 3140.0029
LEU 3150.0035
VAL 3160.0045
SER 3170.0062
VAL 3180.0050
THR 3190.0046
ILE 3200.0035
GLU 3210.0035
ARG 3220.0042
VAL 3230.0046
LYS 3240.0049
ASP 3250.0031
PHE 3260.0036
SER 3270.0044
TYR 3280.0035
ASN 3290.0032
PHE 3300.0020
GLY 3310.0021
TRP 3320.0019
GLN 3330.0019
HIS 3340.0015
LEU 3350.0018
GLU 3360.0026
LEU 3370.0043
VAL 3380.0060
ASN 3390.0075
CYS 3400.0065
LYS 3410.0073
PHE 3420.0075
GLY 3430.0082
GLN 3440.0085
PHE 3450.0078
PRO 3460.0063
THR 3470.0061
LEU 3480.0044
LYS 3490.0041
LEU 3500.0026
LYS 3510.0031
SER 3520.0020
LEU 3530.0010
LYS 3540.0007
ARG 3550.0008
LEU 3560.0015
THR 3570.0038
PHE 3580.0055
THR 3590.0071
SER 3600.0091
ASN 3610.0089
LYS 3620.0108
GLY 3630.0107
GLY 3640.0108
ASN 3650.0103
ALA 3660.0105
PHE 3670.0091
SER 3680.0085
GLU 3690.0072
VAL 3700.0053
ASP 3710.0042
LEU 3720.0012
PRO 3730.0013
SER 3740.0009
LEU 3750.0008
GLU 3760.0007
PHE 3770.0021
LEU 3780.0029
ASP 3790.0047
LEU 3800.0058
SER 3810.0072
ARG 3820.0091
ASN 3830.0093
GLY 3840.0099
LEU 3850.0090
SER 3860.0090
PHE 3870.0076
LYS 3880.0079
GLY 3890.0067
CYS 3900.0051
CYS 3910.0033
SER 3920.0040
GLN 3930.0037
SER 3940.0055
ASP 3950.0054
PHE 3960.0039
GLY 3970.0036
THR 3980.0022
ILE 3990.0025
SER 4000.0019
LEU 4010.0013
LYS 4020.0028
TYR 4030.0036
LEU 4040.0034
ASP 4050.0050
LEU 4060.0055
SER 4070.0068
PHE 4080.0079
ASN 4090.0077
GLY 4100.0079
VAL 4110.0071
ILE 4120.0060
THR 4130.0056
MET 4140.0040
SER 4150.0043
SER 4160.0030
ASN 4170.0021
PHE 4180.0015
LEU 4190.0030
GLY 4200.0029
LEU 4210.0012
GLU 4220.0031
GLN 4230.0037
LEU 4240.0031
GLU 4250.0049
HIS 4260.0052
LEU 4270.0044
ASP 4280.0050
PHE 4290.0048
GLN 4300.0054
HIS 4310.0058
SER 4320.0059
ASN 4330.0056
LEU 4340.0044
LYS 4350.0042
GLN 4360.0033
MET 4370.0023
SER 4380.0019
GLU 4390.0027
PHE 4400.0018
SER 4410.0010
VAL 4420.0012
PHE 4430.0015
LEU 4440.0023
SER 4450.0028
LEU 4460.0031
ARG 4470.0051
ASN 4480.0058
LEU 4490.0051
ILE 4500.0068
TYR 4510.0067
LEU 4520.0047
ASP 4530.0050
ILE 4540.0043
SER 4550.0047
HIS 4560.0047
THR 4570.0038
HIS 4580.0033
THR 4590.0030
ARG 4600.0024
VAL 4610.0022
ALA 4620.0011
PHE 4630.0006
ASN 4640.0013
GLY 4650.0016
ILE 4660.0014
PHE 4670.0028
ASN 4680.0032
GLY 4690.0040
LEU 4700.0046
SER 4710.0058
SER 4720.0069
LEU 4730.0059
GLU 4740.0069
VAL 4750.0065
LEU 4760.0052
LYS 4770.0046
MET 4780.0040
ALA 4790.0042
GLY 4800.0041
ASN 4810.0036
SER 4820.0026
PHE 4830.0016
GLN 4840.0012
GLU 4850.0015
ASN 4860.0012
PHE 4870.0006
LEU 4880.0007
PRO 4890.0012
ASP 4900.0022
ILE 4910.0025
PHE 4920.0032
THR 4930.0039
GLU 4940.0048
LEU 4950.0048
ARG 4960.0055
ASN 4970.0062
LEU 4980.0052
THR 4990.0055
PHE 5000.0051
LEU 5010.0040
ASP 5020.0032
LEU 5030.0028
SER 5040.0029
GLN 5050.0030
CYS 5060.0027
GLN 5070.0022
LEU 5080.0015
GLU 5090.0016
GLN 5100.0011
LEU 5110.0006
SER 5120.0010
PRO 5130.0017
THR 5140.0021
ALA 5150.0015
PHE 5160.0018
ASN 5170.0030
SER 5180.0040
LEU 5190.0036
SER 5200.0040
SER 5210.0042
LEU 5220.0028
GLN 5230.0028
VAL 5240.0025
LEU 5250.0019
ASN 5260.0023
MET 5270.0014
SER 5280.0017
HIS 5290.0023
ASN 5300.0021
ASN 5310.0023
PHE 5320.0026
PHE 5330.0029
SER 5340.0027
LEU 5350.0023
ASP 5360.0021
THR 5370.0018
PHE 5380.0017
PRO 5390.0010
TYR 5400.0011
LYS 5410.0018
CYS 5420.0027
LEU 5430.0019
ASN 5440.0027
SER 5450.0022
LEU 5460.0011
GLN 5470.0010
VAL 5480.0012
LEU 5490.0015
ASP 5500.0019
TYR 5510.0024
SER 5520.0027
LEU 5530.0027
ASN 5540.0027
HIS 5550.0028
ILE 5560.0027
MET 5570.0033
THR 5580.0032
SER 5590.0030
LYS 5600.0033
LYS 5610.0030
GLN 5620.0029
GLU 5630.0021
LEU 5640.0024
GLN 5650.0026
HIS 5660.0019
PHE 5670.0027
PRO 5680.0027
SER 5690.0036
SER 5700.0028
LEU 5710.0023
ALA 5720.0035
PHE 5730.0035
LEU 5740.0035
ASN 5750.0035
LEU 5760.0037
THR 5770.0037
GLN 5780.0033
ASN 5790.0031
ASP 5800.0024
PHE 5810.0022
ALA 5820.0024
CYS 5830.0034
THR 5840.0059
CYS 5850.0084
GLU 5860.0089
HIS 5870.0048
GLN 5880.0045
SER 5890.0044
PHE 5900.0034
LEU 5910.0026
GLN 5920.0026
TRP 5930.0028
ILE 5940.0025
LYS 5950.0024
ASP 5960.0025
GLN 5970.0038
ARG 5980.0039
GLN 5990.0045
LEU 6000.0046
LEU 6010.0043
VAL 6020.0055
GLU 6030.0052
VAL 6040.0048
GLU 6050.0047
ARG 6060.0050
MET 6070.0035
GLU 6080.0028
CYS 6090.0017
ALA 6100.0025
THR 6110.0017
PRO 6120.0051
SER 6130.0077
ASP 6140.0105
LYS 6150.0084
GLN 6160.0075
GLY 6170.0052
MET 6180.0039
PRO 6190.0028
VAL 6200.0014
LEU 6210.0011
SER 6220.0042
LEU 6230.0036
ASN 6240.0056
ILE 6250.0059
THR 6260.0081
CYS 6270.0139
GLU 10.0136
ALA 20.0045
ALA 30.0080
ALA 40.0052
LYS 50.0056
MET 60.0086
GLN 70.0069
ARG 80.0057
LEU 90.0090
VAL 100.0096
LEU 110.0072
LEU 120.0055
LEU 130.0025
ALA 140.0039
ILE 150.0023
SER 160.0093
LEU 170.0141
LEU 180.0090
LEU 190.0068
TYR 200.0167
GLN 210.0141
ASP 220.0062
LEU 230.0066
PRO 240.0074
VAL 250.0155
ARG 260.0034
SER 270.0031
GLU 280.0042
PHE 290.0050
GLU 300.0035
LEU 310.0041
ASP 320.0044
ARG 330.0032
ILE 340.0032
CYS 350.0043
GLY 360.0031
TYR 370.0024
GLY 380.0018
THR 390.0023
ALA 400.0026
ARG 410.0040
CYS 420.0066
ARG 430.0085
LYS 440.0114
LYS 450.0118
CYS 460.0077
ARG 470.0075
SER 480.0090
GLN 490.0084
GLU 500.0077
TYR 510.0106
ARG 520.0103
ILE 530.0080
GLY 540.0096
ARG 550.0115
CYS 560.0107
PRO 570.0127
ASN 580.0133
THR 590.0146
TYR 600.0126
ALA 610.0093
CYS 620.0072
CYS 630.0070
LEU 640.0065
ARG 650.0074
LYS 660.0092
TRP 670.0110
ASP 680.0089
GLU 690.0091
SER 700.0083
LEU 710.0099
LEU 720.0099
ASN 730.0069
ARG 740.0082
THR 750.0103
LYS 760.0025
PRO 770.0027
GLU 780.0054
ALA 790.0089
ALA 800.0077
ALA 810.0158
LYS 820.0151
LYS 830.0122
GLU 840.0123
MET 850.0104
ASN 860.0100
LEU 870.0097
SER 880.0090
VAL 890.0089
GLY 900.0081
LEU 910.0132
GLY 920.0254
GLY 930.0420
GLY 940.0409
SER 950.0295
ASN 960.0116
LEU 970.0109
SER 980.0105
VAL 990.0099
GLY 1000.0096
LEU 1010.0126
GLY 1020.0161
GLU 1030.0163
ILE 1040.0191
GLY 1050.0193
GLY 1060.0256
GLY 1070.0165
SER 1080.0130
LYS 1090.0086
LEU 1100.0128
LEU 1110.0170
ASP 1120.0176
ILE 1130.0132
ASN 1140.0169
LEU 1150.0139
GLY 1160.0171
ARG 1170.0217
GLY 1180.0168
GLY 1190.0101
GLY 1200.0112
SER 1210.0074
MET 1220.0058
VAL 1230.0066
ASP 1240.0050
LEU 1250.0059
THR 1260.0065
PHE 1270.0060
GLY 1280.0057
GLY 1290.0059
VAL 1300.0067
GLY 1310.0234
GLY 1320.0143
GLY 1330.0104
SER 1340.0119
THR 1350.0192
PHE 1360.0123
THR 1370.0123
PHE 1380.0127
PHE 1390.0119
PRO 1400.0136
LEU 1410.0174
VAL 1420.0277
ILE 1430.0275
GLY 1440.0368
GLY 1450.0436
GLY 1460.0201
SER 1470.0199
ASP 1480.0190
ALA 1490.0180
MET 1500.0176
TYR 1510.0108
LEU 1520.0096
GLY 1530.0106
PHE 1540.0095
ALA 1550.0102
ALA 1560.0201
GLY 1570.0329
GLY 1580.0359
GLY 1590.0340
SER 1600.0263
ALA 1610.0348
GLY 1620.0338
GLY 1630.0283
GLU 1640.0226
ASN 1650.0157
HIS 1660.0092
VAL 1670.0074
ALA 1680.0058
PHE 1690.0047
GLY 1700.0050
PRO 1710.0247
GLY 1720.0220
PRO 1730.0189
GLY 1740.0102
VAL 1750.0055
ASP 1760.0039
LEU 1770.0092
THR 1780.0071
PHE 1790.0154
GLY 1800.0137
GLY 1810.0231
VAL 1820.0323
GLN 1830.0276
PHE 1840.0312
ALA 1850.0312
MET 1860.0178
VAL 1870.0182
ASN 1880.0137
ASN 1890.0131
GLY 1900.0272
PRO 1910.0114
GLY 1920.0095
PRO 1930.0055
GLY 1940.0164
GLU 1950.0149
SER 1960.0120
PHE 1970.0325
THR 1980.0355
ALA 1990.0363
GLN 2000.0193
PRO 2010.0346
ALA 2020.0340
ASP 2030.0195
MET 2040.0204
GLN 2050.0214
ALA 2060.0857
GLY 2070.0573
ILE 2080.0374
LYS 2090.0043
GLY 2100.0350
PRO 2110.0565
GLY 2120.0334
PRO 2130.0329
GLY 2140.0300
GLY 2150.0231
SER 2160.0379
ILE 2170.0334
GLN 2180.0254
VAL 2190.0248
ILE 2200.0265
ASN 2210.0181
GLY 2220.0067
SER 2230.0283
THR 2240.0246
ILE 2250.0258
GLY 2260.0278
THR 2270.0239
GLY 2280.0259
SER 2290.0257
LYS 2300.0284
LYS 2310.0219
THR 2320.0201
ILE 2330.0110
LEU 2340.0074
ILE 2350.0150
TYR 2360.0150
SER 2370.0136
ILE 2380.0119
ILE 2390.0159
GLY 2400.0163
VAL 2410.0051
LYS 2420.0041
LYS 2430.0045
GLY 2440.0040
THR 2450.0035
LEU 2460.0105
ALA 2470.0159
TRP 2480.0182
ALA 2490.0245
ARG 2500.0277
THR 2510.0351
GLY 2520.0314
PHE 2530.0181
SER 2540.0176
PRO 2550.0257
ALA 2560.0188
LYS 2570.0219
LYS 2580.0191
LEU 2590.0125
ASN 2600.0102
ALA 2610.0601
GLY 2620.0428
VAL 2630.0405
VAL 2640.0409
ARG 2650.0201
VAL 2660.0147
PHE 2670.0169
PHE 2680.0135
LEU 2690.0171
ASN 2700.0159
GLN 2710.0099
LYS 2720.0081
LYS 2730.0131
ALA 2740.0114
LYS 2750.0068
ASP 2760.0109
VAL 2770.0109
LEU 2780.0067
ARG 2790.0067
LYS 2800.0107
THR 2810.0122
SER 2820.0137
ARG 2830.0092
PRO 2840.0171
MET 2850.0198
VAL 2860.0112
ASP 2870.0079
LEU 2880.0078
THR 2890.0060
PHE 2900.0048
GLY 2910.0092
GLY 2920.0156

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.