CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 81  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0733
GLU 270.0048
PRO 280.0060
CYS 290.0058
VAL 300.0079
GLU 310.0086
VAL 320.0098
VAL 330.0106
PRO 340.0100
ASN 350.0090
ILE 360.0091
THR 370.0070
TYR 380.0056
GLN 390.0053
CYS 400.0043
MET 410.0051
GLU 420.0062
LEU 430.0059
ASN 440.0062
PHE 450.0048
TYR 460.0060
LYS 470.0056
ILE 480.0046
PRO 490.0041
ASP 500.0050
ASN 510.0044
LEU 520.0048
PRO 530.0066
PHE 540.0077
SER 550.0082
THR 560.0063
LYS 570.0057
ASN 580.0044
LEU 590.0035
ASP 600.0028
LEU 610.0029
SER 620.0033
PHE 630.0036
ASN 640.0036
PRO 650.0043
LEU 660.0042
ARG 670.0032
HIS 680.0041
LEU 690.0045
GLY 700.0053
SER 710.0063
TYR 720.0070
SER 730.0061
PHE 740.0053
PHE 750.0064
SER 760.0061
PHE 770.0060
PRO 780.0070
GLU 790.0058
LEU 800.0041
GLN 810.0027
VAL 820.0031
LEU 830.0031
ASP 840.0029
LEU 850.0031
SER 860.0029
ARG 870.0034
CYS 880.0030
GLU 890.0028
ILE 900.0030
GLN 910.0029
THR 920.0041
ILE 930.0041
GLU 940.0048
ASP 950.0053
GLY 960.0050
ALA 970.0052
TYR 980.0045
GLN 990.0052
SER 1000.0048
LEU 1010.0039
SER 1020.0047
HIS 1030.0032
LEU 1040.0030
SER 1050.0032
THR 1060.0032
LEU 1070.0038
ILE 1080.0035
LEU 1090.0030
THR 1100.0032
GLY 1110.0029
ASN 1120.0027
PRO 1130.0026
ILE 1140.0025
GLN 1150.0025
SER 1160.0025
LEU 1170.0035
ALA 1180.0035
LEU 1190.0034
GLY 1200.0030
ALA 1210.0029
PHE 1220.0034
SER 1230.0040
GLY 1240.0035
LEU 1250.0032
SER 1260.0039
SER 1270.0060
LEU 1280.0052
GLN 1290.0062
LYS 1300.0052
LEU 1310.0039
VAL 1320.0037
ALA 1330.0020
VAL 1340.0025
GLU 1350.0024
THR 1360.0010
ASN 1370.0035
LEU 1380.0035
ALA 1390.0055
SER 1400.0058
LEU 1410.0052
GLU 1420.0069
ASN 1430.0065
PHE 1440.0049
PRO 1450.0059
ILE 1460.0056
GLY 1470.0077
HIS 1480.0086
LEU 1490.0072
LYS 1500.0086
THR 1510.0085
LEU 1520.0064
LYS 1530.0065
GLU 1540.0050
LEU 1550.0034
ASN 1560.0022
VAL 1570.0012
ALA 1580.0014
HIS 1590.0028
ASN 1600.0030
LEU 1610.0047
ILE 1620.0051
GLN 1630.0062
SER 1640.0064
PHE 1650.0054
LYS 1660.0066
LEU 1670.0066
PRO 1680.0083
GLU 1690.0093
TYR 1700.0091
PHE 1710.0074
SER 1720.0094
ASN 1730.0099
LEU 1740.0078
THR 1750.0088
ASN 1760.0080
LEU 1770.0050
GLU 1780.0043
HIS 1790.0030
LEU 1800.0022
ASP 1810.0010
LEU 1820.0027
SER 1830.0023
SER 1840.0032
ASN 1850.0042
LYS 1860.0052
ILE 1870.0064
GLN 1880.0071
SER 1890.0073
ILE 1900.0067
TYR 1910.0080
CYS 1920.0068
THR 1930.0074
ASP 1940.0070
LEU 1950.0046
ARG 1960.0049
VAL 1970.0063
LEU 1980.0039
HIS 1990.0037
GLN 2000.0052
MET 2010.0048
PRO 2020.0037
LEU 2030.0042
LEU 2040.0039
ASN 2050.0031
LEU 2060.0024
SER 2070.0031
LEU 2080.0025
ASP 2090.0030
LEU 2100.0031
SER 2110.0033
LEU 2120.0059
ASN 2130.0061
PRO 2140.0071
MET 2150.0064
ASN 2160.0079
PHE 2170.0092
ILE 2180.0077
GLN 2190.0089
PRO 2200.0093
GLY 2210.0086
ALA 2220.0070
PHE 2230.0057
LYS 2240.0078
GLU 2250.0078
ILE 2260.0056
ARG 2270.0057
LEU 2280.0048
HIS 2290.0059
LYS 2300.0050
LEU 2310.0037
THR 2320.0047
LEU 2330.0037
ARG 2340.0057
ASN 2350.0076
ASN 2360.0075
PHE 2370.0095
ASP 2380.0122
SER 2390.0115
LEU 2400.0095
ASN 2410.0113
VAL 2420.0103
MET 2430.0078
LYS 2440.0084
THR 2450.0098
CYS 2460.0079
ILE 2470.0063
GLN 2480.0086
GLY 2490.0080
LEU 2500.0062
ALA 2510.0085
GLY 2520.0085
LEU 2530.0068
GLU 2540.0077
VAL 2550.0067
HIS 2560.0081
ARG 2570.0072
LEU 2580.0049
VAL 2590.0046
LEU 2600.0031
GLY 2610.0043
GLU 2620.0085
PHE 2630.0127
ARG 2640.0156
ASN 2650.0186
GLU 2660.0164
GLY 2670.0157
ASN 2680.0127
LEU 2690.0107
GLU 2700.0116
LYS 2710.0091
PHE 2720.0055
ASP 2730.0051
LYS 2740.0051
SER 2750.0063
ALA 2760.0054
LEU 2770.0038
GLU 2780.0059
GLY 2790.0063
LEU 2800.0057
CYS 2810.0081
ASN 2820.0092
LEU 2830.0075
THR 2840.0085
ILE 2850.0074
GLU 2860.0092
GLU 2870.0077
PHE 2880.0059
ARG 2890.0057
LEU 2900.0045
ALA 2910.0058
TYR 2920.0083
LEU 2930.0068
ASP 2940.0082
TYR 2950.0062
TYR 2960.0061
LEU 2970.0059
ASP 2980.0061
GLY 2990.0062
ILE 3000.0060
ILE 3010.0062
ASP 3020.0047
LEU 3030.0040
PHE 3040.0049
ASN 3050.0056
CYS 3060.0053
LEU 3070.0049
THR 3080.0047
ASN 3090.0051
VAL 3100.0054
SER 3110.0057
SER 3120.0064
PHE 3130.0056
SER 3140.0056
LEU 3150.0053
VAL 3160.0058
SER 3170.0077
VAL 3180.0071
THR 3190.0074
ILE 3200.0075
GLU 3210.0081
ARG 3220.0079
VAL 3230.0074
LYS 3240.0079
ASP 3250.0076
PHE 3260.0070
SER 3270.0068
TYR 3280.0066
ASN 3290.0062
PHE 3300.0052
GLY 3310.0048
TRP 3320.0039
GLN 3330.0038
HIS 3340.0037
LEU 3350.0039
GLU 3360.0038
LEU 3370.0049
VAL 3380.0050
ASN 3390.0061
CYS 3400.0064
LYS 3410.0077
PHE 3420.0081
GLY 3430.0096
GLN 3440.0084
PHE 3450.0068
PRO 3460.0076
THR 3470.0066
LEU 3480.0053
LYS 3490.0067
LEU 3500.0055
LYS 3510.0067
SER 3520.0025
LEU 3530.0020
LYS 3540.0023
ARG 3550.0020
LEU 3560.0016
THR 3570.0007
PHE 3580.0024
THR 3590.0031
SER 3600.0051
ASN 3610.0059
LYS 3620.0078
GLY 3630.0089
GLY 3640.0088
ASN 3650.0065
ALA 3660.0064
PHE 3670.0047
SER 3680.0074
GLU 3690.0088
VAL 3700.0076
ASP 3710.0095
LEU 3720.0076
PRO 3730.0082
SER 3740.0062
LEU 3750.0066
GLU 3760.0075
PHE 3770.0071
LEU 3780.0052
ASP 3790.0043
LEU 3800.0029
SER 3810.0040
ARG 3820.0060
ASN 3830.0049
GLY 3840.0056
LEU 3850.0040
SER 3860.0039
PHE 3870.0041
LYS 3880.0055
GLY 3890.0082
CYS 3900.0083
CYS 3910.0110
SER 3920.0136
GLN 3930.0151
SER 3940.0145
ASP 3950.0106
PHE 3960.0099
GLY 3970.0129
THR 3980.0126
ILE 3990.0153
SER 4000.0139
LEU 4010.0124
LYS 4020.0141
TYR 4030.0123
LEU 4040.0100
ASP 4050.0090
LEU 4060.0069
SER 4070.0091
PHE 4080.0091
ASN 4090.0070
GLY 4100.0064
VAL 4110.0057
ILE 4120.0063
THR 4130.0060
MET 4140.0084
SER 4150.0094
SER 4160.0120
ASN 4170.0135
PHE 4180.0141
LEU 4190.0162
GLY 4200.0179
LEU 4210.0167
GLU 4220.0174
GLN 4230.0184
LEU 4240.0164
GLU 4250.0183
HIS 4260.0165
LEU 4270.0132
ASP 4280.0123
PHE 4290.0103
GLN 4300.0119
HIS 4310.0111
SER 4320.0099
ASN 4330.0089
LEU 4340.0088
LYS 4350.0076
GLN 4360.0079
MET 4370.0102
SER 4380.0102
GLU 4390.0092
PHE 4400.0109
SER 4410.0127
VAL 4420.0115
PHE 4430.0136
LEU 4440.0144
SER 4450.0156
LEU 4460.0164
ARG 4470.0168
ASN 4480.0180
LEU 4490.0165
ILE 4500.0182
TYR 4510.0169
LEU 4520.0135
ASP 4530.0130
ILE 4540.0115
SER 4550.0124
HIS 4560.0116
THR 4570.0108
HIS 4580.0106
THR 4590.0107
ARG 4600.0109
VAL 4610.0116
ALA 4620.0114
PHE 4630.0115
ASN 4640.0122
GLY 4650.0123
ILE 4660.0127
PHE 4670.0124
ASN 4680.0121
GLY 4690.0126
LEU 4700.0133
SER 4710.0135
SER 4720.0125
LEU 4730.0121
GLU 4740.0132
VAL 4750.0130
LEU 4760.0117
LYS 4770.0103
MET 4780.0099
ALA 4790.0101
GLY 4800.0098
ASN 4810.0094
SER 4820.0101
PHE 4830.0099
GLN 4840.0110
GLU 4850.0107
ASN 4860.0094
PHE 4870.0090
LEU 4880.0088
PRO 4890.0085
ASP 4900.0083
ILE 4910.0086
PHE 4920.0086
THR 4930.0080
GLU 4940.0083
LEU 4950.0086
ARG 4960.0081
ASN 4970.0072
LEU 4980.0073
THR 4990.0077
PHE 5000.0078
LEU 5010.0075
ASP 5020.0049
LEU 5030.0053
SER 5040.0051
GLN 5050.0054
CYS 5060.0059
GLN 5070.0061
LEU 5080.0054
GLU 5090.0058
GLN 5100.0052
LEU 5110.0045
SER 5120.0066
PRO 5130.0058
THR 5140.0060
ALA 5150.0061
PHE 5160.0056
ASN 5170.0058
SER 5180.0059
LEU 5190.0059
SER 5200.0061
SER 5210.0060
LEU 5220.0059
GLN 5230.0056
VAL 5240.0048
LEU 5250.0041
ASN 5260.0034
MET 5270.0028
SER 5280.0032
HIS 5290.0032
ASN 5300.0027
ASN 5310.0032
PHE 5320.0049
PHE 5330.0051
SER 5340.0053
LEU 5350.0058
ASP 5360.0052
THR 5370.0059
PHE 5380.0054
PRO 5390.0051
TYR 5400.0056
LYS 5410.0058
CYS 5420.0060
LEU 5430.0063
ASN 5440.0074
SER 5450.0075
LEU 5460.0073
GLN 5470.0083
VAL 5480.0080
LEU 5490.0068
ASP 5500.0071
TYR 5510.0062
SER 5520.0085
LEU 5530.0084
ASN 5540.0084
HIS 5550.0085
ILE 5560.0087
MET 5570.0111
THR 5580.0088
SER 5590.0074
LYS 5600.0061
LYS 5610.0060
GLN 5620.0050
GLU 5630.0057
LEU 5640.0057
GLN 5650.0056
HIS 5660.0068
PHE 5670.0063
PRO 5680.0074
SER 5690.0085
SER 5700.0094
LEU 5710.0089
ALA 5720.0093
PHE 5730.0096
LEU 5740.0087
ASN 5750.0100
LEU 5760.0094
THR 5770.0112
GLN 5780.0126
ASN 5790.0135
ASP 5800.0146
PHE 5810.0132
ALA 5820.0165
CYS 5830.0152
THR 5840.0166
CYS 5850.0149
GLU 5860.0148
HIS 5870.0127
GLN 5880.0105
SER 5890.0085
PHE 5900.0093
LEU 5910.0092
GLN 5920.0068
TRP 5930.0057
ILE 5940.0072
LYS 5950.0055
ASP 5960.0031
GLN 5970.0043
ARG 5980.0050
GLN 5990.0052
LEU 6000.0076
LEU 6010.0086
VAL 6020.0097
GLU 6030.0096
VAL 6040.0083
GLU 6050.0095
ARG 6060.0120
MET 6070.0117
GLU 6080.0153
CYS 6090.0180
ALA 6100.0229
THR 6110.0255
PRO 6120.0301
SER 6130.0360
ASP 6140.0352
LYS 6150.0281
GLN 6160.0293
GLY 6170.0234
MET 6180.0196
PRO 6190.0139
VAL 6200.0122
LEU 6210.0078
SER 6220.0141
LEU 6230.0152
ASN 6240.0172
ILE 6250.0141
THR 6260.0178
CYS 6270.0733
GLU 10.0237
ALA 20.0095
ALA 30.0111
ALA 40.0120
LYS 50.0084
MET 60.0164
GLN 70.0149
ARG 80.0081
LEU 90.0130
VAL 100.0174
LEU 110.0095
LEU 120.0108
LEU 130.0082
ALA 140.0048
ILE 150.0018
SER 160.0188
LEU 170.0310
LEU 180.0217
LEU 190.0059
TYR 200.0300
GLN 210.0300
ASP 220.0164
LEU 230.0054
PRO 240.0125
VAL 250.0336
ARG 260.0120
SER 270.0090
GLU 280.0119
PHE 290.0111
GLU 300.0073
LEU 310.0078
ASP 320.0075
ARG 330.0072
ILE 340.0073
CYS 350.0073
GLY 360.0075
TYR 370.0064
GLY 380.0069
THR 390.0112
ALA 400.0100
ARG 410.0071
CYS 420.0057
ARG 430.0050
LYS 440.0084
LYS 450.0105
CYS 460.0101
ARG 470.0098
SER 480.0123
GLN 490.0109
GLU 500.0108
TYR 510.0138
ARG 520.0115
ILE 530.0131
GLY 540.0113
ARG 550.0091
CYS 560.0091
PRO 570.0132
ASN 580.0126
THR 590.0093
TYR 600.0071
ALA 610.0060
CYS 620.0072
CYS 630.0072
LEU 640.0091
ARG 650.0092
LYS 660.0134
TRP 670.0124
ASP 680.0098
GLU 690.0082
SER 700.0066
LEU 710.0089
LEU 720.0103
ASN 730.0071
ARG 740.0073
THR 750.0107
LYS 760.0091
PRO 770.0111
GLU 780.0093
ALA 790.0131
ALA 800.0167
ALA 810.0244
LYS 820.0199
LYS 830.0159
GLU 840.0115
MET 850.0088
ASN 860.0088
LEU 870.0068
SER 880.0066
VAL 890.0072
GLY 900.0076
LEU 910.0098
GLY 920.0205
GLY 930.0268
GLY 940.0224
SER 950.0122
ASN 960.0079
LEU 970.0085
SER 980.0086
VAL 990.0087
GLY 1000.0111
LEU 1010.0097
GLY 1020.0102
GLU 1030.0107
ILE 1040.0092
GLY 1050.0145
GLY 1060.0167
GLY 1070.0147
SER 1080.0132
LYS 1090.0095
LEU 1100.0099
LEU 1110.0071
ASP 1120.0120
ILE 1130.0110
ASN 1140.0175
LEU 1150.0161
GLY 1160.0177
ARG 1170.0129
GLY 1180.0208
GLY 1190.0136
GLY 1200.0058
SER 1210.0063
MET 1220.0060
VAL 1230.0048
ASP 1240.0052
LEU 1250.0052
THR 1260.0040
PHE 1270.0039
GLY 1280.0030
GLY 1290.0038
VAL 1300.0058
GLY 1310.0397
GLY 1320.0296
GLY 1330.0189
SER 1340.0095
THR 1350.0053
PHE 1360.0046
THR 1370.0066
PHE 1380.0045
PHE 1390.0066
PRO 1400.0046
LEU 1410.0037
VAL 1420.0033
ILE 1430.0128
GLY 1440.0189
GLY 1450.0273
GLY 1460.0166
SER 1470.0129
ASP 1480.0138
ALA 1490.0093
MET 1500.0091
TYR 1510.0021
LEU 1520.0027
GLY 1530.0053
PHE 1540.0074
ALA 1550.0106
ALA 1560.0193
GLY 1570.0185
GLY 1580.0114
GLY 1590.0193
SER 1600.0309
ALA 1610.0290
GLY 1620.0246
GLY 1630.0162
GLU 1640.0117
ASN 1650.0072
HIS 1660.0059
VAL 1670.0046
ALA 1680.0033
PHE 1690.0020
GLY 1700.0014
PRO 1710.0192
GLY 1720.0190
PRO 1730.0173
GLY 1740.0072
VAL 1750.0033
ASP 1760.0062
LEU 1770.0046
THR 1780.0054
PHE 1790.0071
GLY 1800.0083
GLY 1810.0185
VAL 1820.0193
GLN 1830.0154
PHE 1840.0131
ALA 1850.0117
MET 1860.0018
VAL 1870.0046
ASN 1880.0038
ASN 1890.0076
GLY 1900.0068
PRO 1910.0089
GLY 1920.0126
PRO 1930.0102
GLY 1940.0057
GLU 1950.0077
SER 1960.0244
PHE 1970.0168
THR 1980.0008
ALA 1990.0089
GLN 2000.0183
PRO 2010.0167
ALA 2020.0074
ASP 2030.0174
MET 2040.0244
GLN 2050.0163
ALA 2060.0106
GLY 2070.0124
ILE 2080.0189
LYS 2090.0152
GLY 2100.0313
PRO 2110.0105
GLY 2120.0118
PRO 2130.0132
GLY 2140.0109
GLY 2150.0073
SER 2160.0173
ILE 2170.0156
GLN 2180.0271
VAL 2190.0281
ILE 2200.0361
ASN 2210.0562
GLY 2220.0537
SER 2230.0443
THR 2240.0354
ILE 2250.0388
GLY 2260.0185
THR 2270.0125
GLY 2280.0278
SER 2290.0372
LYS 2300.0268
LYS 2310.0132
THR 2320.0169
ILE 2330.0081
LEU 2340.0136
ILE 2350.0078
TYR 2360.0069
SER 2370.0030
ILE 2380.0077
ILE 2390.0097
GLY 2400.0151
VAL 2410.0170
LYS 2420.0132
LYS 2430.0107
GLY 2440.0106
THR 2450.0116
LEU 2460.0163
ALA 2470.0136
TRP 2480.0085
ALA 2490.0071
ARG 2500.0031
THR 2510.0174
GLY 2520.0133
PHE 2530.0143
SER 2540.0134
PRO 2550.0115
ALA 2560.0265
LYS 2570.0147
LYS 2580.0100
LEU 2590.0085
ASN 2600.0025
ALA 2610.0633
GLY 2620.0455
VAL 2630.0347
VAL 2640.0294
ARG 2650.0109
VAL 2660.0077
PHE 2670.0087
PHE 2680.0079
LEU 2690.0091
ASN 2700.0117
GLN 2710.0073
LYS 2720.0053
LYS 2730.0058
ALA 2740.0059
LYS 2750.0054
ASP 2760.0074
VAL 2770.0073
LEU 2780.0068
ARG 2790.0088
LYS 2800.0099
THR 2810.0106
SER 2820.0099
ARG 2830.0074
PRO 2840.0102
MET 2850.0094
VAL 2860.0138
ASP 2870.0140
LEU 2880.0140
THR 2890.0150
PHE 2900.0115
GLY 2910.0171
GLY 2920.0182

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.