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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 82  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1056
GLU 270.0036
PRO 280.0039
CYS 290.0052
VAL 300.0078
GLU 310.0089
VAL 320.0110
VAL 330.0112
PRO 340.0106
ASN 350.0089
ILE 360.0082
THR 370.0072
TYR 380.0055
GLN 390.0059
CYS 400.0042
MET 410.0061
GLU 420.0072
LEU 430.0065
ASN 440.0069
PHE 450.0051
TYR 460.0059
LYS 470.0040
ILE 480.0021
PRO 490.0010
ASP 500.0023
ASN 510.0031
LEU 520.0039
PRO 530.0051
PHE 540.0047
SER 550.0053
THR 560.0043
LYS 570.0032
ASN 580.0033
LEU 590.0025
ASP 600.0034
LEU 610.0031
SER 620.0038
PHE 630.0045
ASN 640.0047
PRO 650.0050
LEU 660.0044
ARG 670.0032
HIS 680.0028
LEU 690.0022
GLY 700.0021
SER 710.0016
TYR 720.0014
SER 730.0011
PHE 740.0007
PHE 750.0008
SER 760.0011
PHE 770.0010
PRO 780.0013
GLU 790.0011
LEU 800.0012
GLN 810.0019
VAL 820.0023
LEU 830.0023
ASP 840.0021
LEU 850.0021
SER 860.0020
ARG 870.0025
CYS 880.0026
GLU 890.0017
ILE 900.0021
GLN 910.0025
THR 920.0018
ILE 930.0014
GLU 940.0015
ASP 950.0012
GLY 960.0013
ALA 970.0012
TYR 980.0013
GLN 990.0014
SER 1000.0012
LEU 1010.0013
SER 1020.0021
HIS 1030.0023
LEU 1040.0022
SER 1050.0028
THR 1060.0028
LEU 1070.0023
ILE 1080.0021
LEU 1090.0014
THR 1100.0021
GLY 1110.0024
ASN 1120.0012
PRO 1130.0017
ILE 1140.0016
GLN 1150.0028
SER 1160.0031
LEU 1170.0014
ALA 1180.0017
LEU 1190.0021
GLY 1200.0020
ALA 1210.0012
PHE 1220.0011
SER 1230.0019
GLY 1240.0023
LEU 1250.0021
SER 1260.0030
SER 1270.0038
LEU 1280.0026
GLN 1290.0033
LYS 1300.0031
LEU 1310.0022
VAL 1320.0021
ALA 1330.0022
VAL 1340.0037
GLU 1350.0048
THR 1360.0038
ASN 1370.0063
LEU 1380.0056
ALA 1390.0064
SER 1400.0057
LEU 1410.0046
GLU 1420.0061
ASN 1430.0061
PHE 1440.0045
PRO 1450.0042
ILE 1460.0030
GLY 1470.0042
HIS 1480.0042
LEU 1490.0028
LYS 1500.0040
THR 1510.0037
LEU 1520.0016
LYS 1530.0021
GLU 1540.0021
LEU 1550.0017
ASN 1560.0034
VAL 1570.0032
ALA 1580.0043
HIS 1590.0058
ASN 1600.0059
LEU 1610.0069
ILE 1620.0048
GLN 1630.0050
SER 1640.0044
PHE 1650.0034
LYS 1660.0041
LEU 1670.0043
PRO 1680.0053
GLU 1690.0058
TYR 1700.0055
PHE 1710.0043
SER 1720.0053
ASN 1730.0051
LEU 1740.0034
THR 1750.0042
ASN 1760.0033
LEU 1770.0011
GLU 1780.0005
HIS 1790.0008
LEU 1800.0018
ASP 1810.0029
LEU 1820.0030
SER 1830.0031
SER 1840.0039
ASN 1850.0041
LYS 1860.0043
ILE 1870.0022
GLN 1880.0018
SER 1890.0011
ILE 1900.0008
TYR 1910.0007
CYS 1920.0018
THR 1930.0027
ASP 1940.0028
LEU 1950.0029
ARG 1960.0038
VAL 1970.0039
LEU 1980.0032
HIS 1990.0034
GLN 2000.0044
MET 2010.0043
PRO 2020.0036
LEU 2030.0033
LEU 2040.0028
ASN 2050.0018
LEU 2060.0017
SER 2070.0029
LEU 2080.0024
ASP 2090.0024
LEU 2100.0019
SER 2110.0023
LEU 2120.0042
ASN 2130.0031
PRO 2140.0035
MET 2150.0025
ASN 2160.0033
PHE 2170.0029
ILE 2180.0017
GLN 2190.0023
PRO 2200.0032
GLY 2210.0036
ALA 2220.0022
PHE 2230.0026
LYS 2240.0042
GLU 2250.0054
ILE 2260.0047
ARG 2270.0039
LEU 2280.0035
HIS 2290.0041
LYS 2300.0035
LEU 2310.0026
THR 2320.0039
LEU 2330.0028
ARG 2340.0051
ASN 2350.0067
ASN 2360.0058
PHE 2370.0074
ASP 2380.0101
SER 2390.0100
LEU 2400.0084
ASN 2410.0091
VAL 2420.0074
MET 2430.0055
LYS 2440.0055
THR 2450.0060
CYS 2460.0039
ILE 2470.0025
GLN 2480.0040
GLY 2490.0031
LEU 2500.0018
ALA 2510.0038
GLY 2520.0041
LEU 2530.0034
GLU 2540.0041
VAL 2550.0036
HIS 2560.0047
ARG 2570.0045
LEU 2580.0029
VAL 2590.0035
LEU 2600.0030
GLY 2610.0044
GLU 2620.0079
PHE 2630.0119
ARG 2640.0150
ASN 2650.0174
GLU 2660.0150
GLY 2670.0144
ASN 2680.0120
LEU 2690.0102
GLU 2700.0115
LYS 2710.0090
PHE 2720.0054
ASP 2730.0043
LYS 2740.0025
SER 2750.0037
ALA 2760.0035
LEU 2770.0014
GLU 2780.0024
GLY 2790.0025
LEU 2800.0013
CYS 2810.0032
ASN 2820.0035
LEU 2830.0030
THR 2840.0040
ILE 2850.0035
GLU 2860.0049
GLU 2870.0047
PHE 2880.0038
ARG 2890.0043
LEU 2900.0042
ALA 2910.0052
TYR 2920.0080
LEU 2930.0066
ASP 2940.0083
TYR 2950.0064
TYR 2960.0056
LEU 2970.0041
ASP 2980.0037
GLY 2990.0038
ILE 3000.0038
ILE 3010.0035
ASP 3020.0020
LEU 3030.0020
PHE 3040.0027
ASN 3050.0027
CYS 3060.0022
LEU 3070.0032
THR 3080.0036
ASN 3090.0038
VAL 3100.0039
SER 3110.0044
SER 3120.0046
PHE 3130.0044
SER 3140.0048
LEU 3150.0049
VAL 3160.0055
SER 3170.0074
VAL 3180.0063
THR 3190.0062
ILE 3200.0058
GLU 3210.0061
ARG 3220.0064
VAL 3230.0064
LYS 3240.0068
ASP 3250.0058
PHE 3260.0058
SER 3270.0060
TYR 3280.0057
ASN 3290.0052
PHE 3300.0045
GLY 3310.0039
TRP 3320.0037
GLN 3330.0033
HIS 3340.0030
LEU 3350.0037
GLU 3360.0036
LEU 3370.0050
VAL 3380.0054
ASN 3390.0062
CYS 3400.0060
LYS 3410.0067
PHE 3420.0070
GLY 3430.0080
GLN 3440.0076
PHE 3450.0065
PRO 3460.0062
THR 3470.0057
LEU 3480.0046
LYS 3490.0046
LEU 3500.0037
LYS 3510.0037
SER 3520.0022
LEU 3530.0018
LYS 3540.0013
ARG 3550.0011
LEU 3560.0014
THR 3570.0024
PHE 3580.0037
THR 3590.0044
SER 3600.0059
ASN 3610.0063
LYS 3620.0074
GLY 3630.0079
GLY 3640.0078
ASN 3650.0067
ALA 3660.0066
PHE 3670.0048
SER 3680.0048
GLU 3690.0039
VAL 3700.0030
ASP 3710.0029
LEU 3720.0011
PRO 3730.0016
SER 3740.0010
LEU 3750.0011
GLU 3760.0018
PHE 3770.0026
LEU 3780.0019
ASP 3790.0029
LEU 3800.0029
SER 3810.0040
ARG 3820.0056
ASN 3830.0052
GLY 3840.0060
LEU 3850.0047
SER 3860.0046
PHE 3870.0034
LYS 3880.0026
GLY 3890.0022
CYS 3900.0027
CYS 3910.0034
SER 3920.0030
GLN 3930.0037
SER 3940.0033
ASP 3950.0015
PHE 3960.0013
GLY 3970.0027
THR 3980.0023
ILE 3990.0040
SER 4000.0038
LEU 4010.0034
LYS 4020.0058
TYR 4030.0057
LEU 4040.0047
ASP 4050.0052
LEU 4060.0044
SER 4070.0061
PHE 4080.0065
ASN 4090.0056
GLY 4100.0055
VAL 4110.0052
ILE 4120.0046
THR 4130.0038
MET 4140.0040
SER 4150.0033
SER 4160.0040
ASN 4170.0051
PHE 4180.0050
LEU 4190.0052
GLY 4200.0056
LEU 4210.0057
GLU 4220.0069
GLN 4230.0076
LEU 4240.0073
GLU 4250.0085
HIS 4260.0083
LEU 4270.0070
ASP 4280.0071
PHE 4290.0064
GLN 4300.0071
HIS 4310.0069
SER 4320.0064
ASN 4330.0060
LEU 4340.0057
LYS 4350.0051
GLN 4360.0048
MET 4370.0052
SER 4380.0046
GLU 4390.0041
PHE 4400.0046
SER 4410.0054
VAL 4420.0053
PHE 4430.0063
LEU 4440.0063
SER 4450.0068
LEU 4460.0075
ARG 4470.0082
ASN 4480.0089
LEU 4490.0085
ILE 4500.0095
TYR 4510.0092
LEU 4520.0072
ASP 4530.0072
ILE 4540.0064
SER 4550.0068
HIS 4560.0067
THR 4570.0060
HIS 4580.0056
THR 4590.0051
ARG 4600.0046
VAL 4610.0044
ALA 4620.0038
PHE 4630.0037
ASN 4640.0036
GLY 4650.0045
ILE 4660.0052
PHE 4670.0056
ASN 4680.0057
GLY 4690.0066
LEU 4700.0070
SER 4710.0072
SER 4720.0076
LEU 4730.0069
GLU 4740.0073
VAL 4750.0073
LEU 4760.0063
LYS 4770.0055
MET 4780.0050
ALA 4790.0053
GLY 4800.0053
ASN 4810.0047
SER 4820.0047
PHE 4830.0034
GLN 4840.0034
GLU 4850.0040
ASN 4860.0037
PHE 4870.0032
LEU 4880.0024
PRO 4890.0010
ASP 4900.0006
ILE 4910.0019
PHE 4920.0025
THR 4930.0027
GLU 4940.0043
LEU 4950.0042
ARG 4960.0040
ASN 4970.0044
LEU 4980.0037
THR 4990.0038
PHE 5000.0041
LEU 5010.0034
ASP 5020.0026
LEU 5030.0023
SER 5040.0030
GLN 5050.0036
CYS 5060.0030
GLN 5070.0042
LEU 5080.0036
GLU 5090.0041
GLN 5100.0036
LEU 5110.0029
SER 5120.0026
PRO 5130.0030
THR 5140.0020
ALA 5150.0013
PHE 5160.0012
ASN 5170.0016
SER 5180.0016
LEU 5190.0006
SER 5200.0014
SER 5210.0008
LEU 5220.0010
GLN 5230.0016
VAL 5240.0020
LEU 5250.0020
ASN 5260.0024
MET 5270.0028
SER 5280.0030
HIS 5290.0031
ASN 5300.0031
ASN 5310.0033
PHE 5320.0038
PHE 5330.0037
SER 5340.0037
LEU 5350.0037
ASP 5360.0038
THR 5370.0040
PHE 5380.0039
PRO 5390.0038
TYR 5400.0038
LYS 5410.0039
CYS 5420.0033
LEU 5430.0030
ASN 5440.0034
SER 5450.0029
LEU 5460.0033
GLN 5470.0046
VAL 5480.0044
LEU 5490.0042
ASP 5500.0042
TYR 5510.0039
SER 5520.0043
LEU 5530.0044
ASN 5540.0042
HIS 5550.0040
ILE 5560.0037
MET 5570.0030
THR 5580.0023
SER 5590.0025
LYS 5600.0028
LYS 5610.0035
GLN 5620.0029
GLU 5630.0034
LEU 5640.0030
GLN 5650.0031
HIS 5660.0038
PHE 5670.0043
PRO 5680.0047
SER 5690.0055
SER 5700.0054
LEU 5710.0052
ALA 5720.0061
PHE 5730.0057
LEU 5740.0049
ASN 5750.0051
LEU 5760.0043
THR 5770.0049
GLN 5780.0060
ASN 5790.0054
ASP 5800.0059
PHE 5810.0042
ALA 5820.0048
CYS 5830.0070
THR 5840.0069
CYS 5850.0085
GLU 5860.0063
HIS 5870.0029
GLN 5880.0039
SER 5890.0029
PHE 5900.0008
LEU 5910.0026
GLN 5920.0027
TRP 5930.0012
ILE 5940.0011
LYS 5950.0018
ASP 5960.0017
GLN 5970.0022
ARG 5980.0017
GLN 5990.0034
LEU 6000.0045
LEU 6010.0042
VAL 6020.0053
GLU 6030.0051
VAL 6040.0040
GLU 6050.0048
ARG 6060.0057
MET 6070.0057
GLU 6080.0080
CYS 6090.0087
ALA 6100.0111
THR 6110.0116
PRO 6120.0152
SER 6130.0204
ASP 6140.0222
LYS 6150.0175
GLN 6160.0176
GLY 6170.0141
MET 6180.0117
PRO 6190.0078
VAL 6200.0055
LEU 6210.0041
SER 6220.0103
LEU 6230.0082
ASN 6240.0081
ILE 6250.0064
THR 6260.0065
CYS 6270.0578
GLU 10.0155
ALA 20.0056
ALA 30.0078
ALA 40.0073
LYS 50.0051
MET 60.0102
GLN 70.0090
ARG 80.0060
LEU 90.0090
VAL 100.0107
LEU 110.0068
LEU 120.0067
LEU 130.0043
ALA 140.0030
ILE 150.0013
SER 160.0114
LEU 170.0180
LEU 180.0119
LEU 190.0056
TYR 200.0192
GLN 210.0178
ASP 220.0087
LEU 230.0053
PRO 240.0082
VAL 250.0191
ARG 260.0012
SER 270.0014
GLU 280.0015
PHE 290.0025
GLU 300.0027
LEU 310.0035
ASP 320.0039
ARG 330.0036
ILE 340.0036
CYS 350.0045
GLY 360.0049
TYR 370.0044
GLY 380.0043
THR 390.0062
ALA 400.0045
ARG 410.0042
CYS 420.0074
ARG 430.0104
LYS 440.0149
LYS 450.0153
CYS 460.0100
ARG 470.0097
SER 480.0115
GLN 490.0102
GLU 500.0096
TYR 510.0117
ARG 520.0094
ILE 530.0061
GLY 540.0059
ARG 550.0090
CYS 560.0105
PRO 570.0149
ASN 580.0171
THR 590.0161
TYR 600.0141
ALA 610.0089
CYS 620.0065
CYS 630.0070
LEU 640.0069
ARG 650.0081
LYS 660.0103
TRP 670.0106
ASP 680.0082
GLU 690.0084
SER 700.0070
LEU 710.0077
LEU 720.0096
ASN 730.0077
ARG 740.0084
THR 750.0113
LYS 760.0099
PRO 770.0124
GLU 780.0093
ALA 790.0138
ALA 800.0179
ALA 810.0309
LYS 820.0284
LYS 830.0218
GLU 840.0168
MET 850.0118
ASN 860.0116
LEU 870.0089
SER 880.0072
VAL 890.0086
GLY 900.0108
LEU 910.0138
GLY 920.0264
GLY 930.0333
GLY 940.0265
SER 950.0173
ASN 960.0114
LEU 970.0100
SER 980.0097
VAL 990.0097
GLY 1000.0142
LEU 1010.0167
GLY 1020.0169
GLU 1030.0169
ILE 1040.0111
GLY 1050.0180
GLY 1060.0360
GLY 1070.0286
SER 1080.0220
LYS 1090.0140
LEU 1100.0146
LEU 1110.0092
ASP 1120.0114
ILE 1130.0117
ASN 1140.0204
LEU 1150.0202
GLY 1160.0265
ARG 1170.0300
GLY 1180.0378
GLY 1190.0181
GLY 1200.0106
SER 1210.0124
MET 1220.0125
VAL 1230.0111
ASP 1240.0135
LEU 1250.0145
THR 1260.0127
PHE 1270.0110
GLY 1280.0076
GLY 1290.0082
VAL 1300.0156
GLY 1310.1056
GLY 1320.0778
GLY 1330.0466
SER 1340.0237
THR 1350.0154
PHE 1360.0176
THR 1370.0213
PHE 1380.0159
PHE 1390.0189
PRO 1400.0151
LEU 1410.0151
VAL 1420.0186
ILE 1430.0182
GLY 1440.0279
GLY 1450.0334
GLY 1460.0288
SER 1470.0249
ASP 1480.0207
ALA 1490.0165
MET 1500.0092
TYR 1510.0048
LEU 1520.0081
GLY 1530.0173
PHE 1540.0212
ALA 1550.0301
ALA 1560.0547
GLY 1570.0553
GLY 1580.0353
GLY 1590.0488
SER 1600.0779
ALA 1610.0744
GLY 1620.0642
GLY 1630.0428
GLU 1640.0302
ASN 1650.0184
HIS 1660.0172
VAL 1670.0143
ALA 1680.0125
PHE 1690.0098
GLY 1700.0083
PRO 1710.0605
GLY 1720.0651
PRO 1730.0600
GLY 1740.0262
VAL 1750.0069
ASP 1760.0204
LEU 1770.0080
THR 1780.0148
PHE 1790.0180
GLY 1800.0270
GLY 1810.0693
VAL 1820.0677
GLN 1830.0514
PHE 1840.0382
ALA 1850.0306
MET 1860.0118
VAL 1870.0178
ASN 1880.0049
ASN 1890.0183
GLY 1900.0130
PRO 1910.0168
GLY 1920.0203
PRO 1930.0140
GLY 1940.0072
GLU 1950.0113
SER 1960.0253
PHE 1970.0131
THR 1980.0077
ALA 1990.0079
GLN 2000.0159
PRO 2010.0152
ALA 2020.0055
ASP 2030.0153
MET 2040.0220
GLN 2050.0150
ALA 2060.0279
GLY 2070.0169
ILE 2080.0249
LYS 2090.0167
GLY 2100.0338
PRO 2110.0177
GLY 2120.0054
PRO 2130.0133
GLY 2140.0094
GLY 2150.0117
SER 2160.0126
ILE 2170.0135
GLN 2180.0175
VAL 2190.0214
ILE 2200.0257
ASN 2210.0262
GLY 2220.0203
SER 2230.0088
THR 2240.0057
ILE 2250.0115
GLY 2260.0111
THR 2270.0081
GLY 2280.0049
SER 2290.0077
LYS 2300.0083
LYS 2310.0082
THR 2320.0090
ILE 2330.0117
LEU 2340.0111
ILE 2350.0157
TYR 2360.0133
SER 2370.0132
ILE 2380.0098
ILE 2390.0054
GLY 2400.0029
VAL 2410.0035
LYS 2420.0039
LYS 2430.0043
GLY 2440.0064
THR 2450.0069
LEU 2460.0097
ALA 2470.0065
TRP 2480.0041
ALA 2490.0059
ARG 2500.0059
THR 2510.0150
GLY 2520.0122
PHE 2530.0101
SER 2540.0071
PRO 2550.0055
ALA 2560.0101
LYS 2570.0102
LYS 2580.0098
LEU 2590.0082
ASN 2600.0083
ALA 2610.0105
GLY 2620.0067
VAL 2630.0027
VAL 2640.0023
ARG 2650.0053
VAL 2660.0082
PHE 2670.0072
PHE 2680.0055
LEU 2690.0062
ASN 2700.0066
GLN 2710.0040
LYS 2720.0017
LYS 2730.0036
ALA 2740.0045
LYS 2750.0030
ASP 2760.0046
VAL 2770.0049
LEU 2780.0048
ARG 2790.0050
LYS 2800.0053
THR 2810.0022
SER 2820.0023
ARG 2830.0016
PRO 2840.0024
MET 2850.0041
VAL 2860.0080
ASP 2870.0079
LEU 2880.0082
THR 2890.0086
PHE 2900.0065
GLY 2910.0108
GLY 2920.0131

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.