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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 83  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0866
GLU 270.0155
PRO 280.0144
CYS 290.0102
VAL 300.0095
GLU 310.0104
VAL 320.0149
VAL 330.0184
PRO 340.0177
ASN 350.0194
ILE 360.0197
THR 370.0148
TYR 380.0102
GLN 390.0091
CYS 400.0079
MET 410.0113
GLU 420.0138
LEU 430.0139
ASN 440.0145
PHE 450.0122
TYR 460.0132
LYS 470.0103
ILE 480.0090
PRO 490.0111
ASP 500.0164
ASN 510.0167
LEU 520.0129
PRO 530.0158
PHE 540.0178
SER 550.0186
THR 560.0150
LYS 570.0156
ASN 580.0128
LEU 590.0096
ASP 600.0083
LEU 610.0068
SER 620.0079
PHE 630.0088
ASN 640.0077
PRO 650.0076
LEU 660.0069
ARG 670.0066
HIS 680.0067
LEU 690.0071
GLY 700.0070
SER 710.0075
TYR 720.0075
SER 730.0051
PHE 740.0086
PHE 750.0107
SER 760.0120
PHE 770.0117
PRO 780.0138
GLU 790.0139
LEU 800.0120
GLN 810.0127
VAL 820.0091
LEU 830.0078
ASP 840.0065
LEU 850.0059
SER 860.0066
ARG 870.0050
CYS 880.0054
GLU 890.0062
ILE 900.0071
GLN 910.0084
THR 920.0078
ILE 930.0079
GLU 940.0084
ASP 950.0089
GLY 960.0087
ALA 970.0064
TYR 980.0076
GLN 990.0091
SER 1000.0093
LEU 1010.0096
SER 1020.0097
HIS 1030.0089
LEU 1040.0076
SER 1050.0076
THR 1060.0064
LEU 1070.0055
ILE 1080.0050
LEU 1090.0056
THR 1100.0057
GLY 1110.0060
ASN 1120.0060
PRO 1130.0074
ILE 1140.0080
GLN 1150.0095
SER 1160.0101
LEU 1170.0080
ALA 1180.0086
LEU 1190.0091
GLY 1200.0085
ALA 1210.0075
PHE 1220.0066
SER 1230.0074
GLY 1240.0067
LEU 1250.0057
SER 1260.0069
SER 1270.0037
LEU 1280.0039
GLN 1290.0036
LYS 1300.0041
LEU 1310.0050
VAL 1320.0041
ALA 1330.0047
VAL 1340.0047
GLU 1350.0053
THR 1360.0056
ASN 1370.0052
LEU 1380.0047
ALA 1390.0043
SER 1400.0057
LEU 1410.0067
GLU 1420.0052
ASN 1430.0055
PHE 1440.0050
PRO 1450.0066
ILE 1460.0058
GLY 1470.0056
HIS 1480.0076
LEU 1490.0048
LYS 1500.0047
THR 1510.0028
LEU 1520.0029
LYS 1530.0024
GLU 1540.0028
LEU 1550.0033
ASN 1560.0037
VAL 1570.0035
ALA 1580.0025
HIS 1590.0028
ASN 1600.0036
LEU 1610.0040
ILE 1620.0062
GLN 1630.0073
SER 1640.0094
PHE 1650.0097
LYS 1660.0119
LEU 1670.0097
PRO 1680.0107
GLU 1690.0125
TYR 1700.0119
PHE 1710.0110
SER 1720.0105
ASN 1730.0102
LEU 1740.0070
THR 1750.0069
ASN 1760.0040
LEU 1770.0035
GLU 1780.0017
HIS 1790.0017
LEU 1800.0029
ASP 1810.0025
LEU 1820.0040
SER 1830.0024
SER 1840.0022
ASN 1850.0039
LYS 1860.0054
ILE 1870.0083
GLN 1880.0105
SER 1890.0129
ILE 1900.0134
TYR 1910.0166
CYS 1920.0168
THR 1930.0174
ASP 1940.0155
LEU 1950.0149
ARG 1960.0165
VAL 1970.0145
LEU 1980.0131
HIS 1990.0145
GLN 2000.0151
MET 2010.0135
PRO 2020.0110
LEU 2030.0090
LEU 2040.0075
ASN 2050.0041
LEU 2060.0032
SER 2070.0024
LEU 2080.0034
ASP 2090.0028
LEU 2100.0044
SER 2110.0038
LEU 2120.0046
ASN 2130.0060
PRO 2140.0081
MET 2150.0093
ASN 2160.0118
PHE 2170.0143
ILE 2180.0141
GLN 2190.0166
PRO 2200.0174
GLY 2210.0177
ALA 2220.0160
PHE 2230.0136
LYS 2240.0154
GLU 2250.0147
ILE 2260.0127
ARG 2270.0067
LEU 2280.0054
HIS 2290.0038
LYS 2300.0031
LEU 2310.0040
THR 2320.0037
LEU 2330.0047
ARG 2340.0047
ASN 2350.0057
ASN 2360.0063
PHE 2370.0087
ASP 2380.0091
SER 2390.0099
LEU 2400.0103
ASN 2410.0112
VAL 2420.0116
MET 2430.0110
LYS 2440.0121
THR 2450.0126
CYS 2460.0116
ILE 2470.0115
GLN 2480.0136
GLY 2490.0134
LEU 2500.0117
ALA 2510.0129
GLY 2520.0116
LEU 2530.0092
GLU 2540.0066
VAL 2550.0050
HIS 2560.0038
ARG 2570.0039
LEU 2580.0043
VAL 2590.0042
LEU 2600.0049
GLY 2610.0053
GLU 2620.0045
PHE 2630.0052
ARG 2640.0061
ASN 2650.0064
GLU 2660.0057
GLY 2670.0059
ASN 2680.0061
LEU 2690.0067
GLU 2700.0080
LYS 2710.0081
PHE 2720.0067
ASP 2730.0068
LYS 2740.0066
SER 2750.0068
ALA 2760.0065
LEU 2770.0068
GLU 2780.0076
GLY 2790.0078
LEU 2800.0075
CYS 2810.0081
ASN 2820.0104
LEU 2830.0081
THR 2840.0062
ILE 2850.0054
GLU 2860.0049
GLU 2870.0052
PHE 2880.0054
ARG 2890.0051
LEU 2900.0053
ALA 2910.0049
TYR 2920.0041
LEU 2930.0030
ASP 2940.0039
TYR 2950.0031
TYR 2960.0030
LEU 2970.0020
ASP 2980.0019
GLY 2990.0018
ILE 3000.0020
ILE 3010.0020
ASP 3020.0044
LEU 3030.0046
PHE 3040.0049
ASN 3050.0048
CYS 3060.0050
LEU 3070.0064
THR 3080.0070
ASN 3090.0067
VAL 3100.0066
SER 3110.0071
SER 3120.0059
PHE 3130.0059
SER 3140.0057
LEU 3150.0058
VAL 3160.0057
SER 3170.0054
VAL 3180.0045
THR 3190.0041
ILE 3200.0038
GLU 3210.0038
ARG 3220.0048
VAL 3230.0050
LYS 3240.0051
ASP 3250.0052
PHE 3260.0055
SER 3270.0061
TYR 3280.0056
ASN 3290.0042
PHE 3300.0042
GLY 3310.0042
TRP 3320.0065
GLN 3330.0058
HIS 3340.0052
LEU 3350.0053
GLU 3360.0050
LEU 3370.0047
VAL 3380.0058
ASN 3390.0068
CYS 3400.0064
LYS 3410.0071
PHE 3420.0076
GLY 3430.0088
GLN 3440.0083
PHE 3450.0072
PRO 3460.0072
THR 3470.0093
LEU 3480.0072
LYS 3490.0076
LEU 3500.0055
LYS 3510.0057
SER 3520.0035
LEU 3530.0035
LYS 3540.0025
ARG 3550.0027
LEU 3560.0038
THR 3570.0039
PHE 3580.0047
THR 3590.0050
SER 3600.0062
ASN 3610.0071
LYS 3620.0093
GLY 3630.0109
GLY 3640.0116
ASN 3650.0099
ALA 3660.0114
PHE 3670.0123
SER 3680.0148
GLU 3690.0158
VAL 3700.0130
ASP 3710.0137
LEU 3720.0111
PRO 3730.0118
SER 3740.0094
LEU 3750.0093
GLU 3760.0102
PHE 3770.0079
LEU 3780.0070
ASP 3790.0052
LEU 3800.0060
SER 3810.0047
ARG 3820.0053
ASN 3830.0074
GLY 3840.0089
LEU 3850.0096
SER 3860.0120
PHE 3870.0140
LYS 3880.0172
GLY 3890.0190
CYS 3900.0166
CYS 3910.0176
SER 3920.0214
GLN 3930.0219
SER 3940.0227
ASP 3950.0191
PHE 3960.0163
GLY 3970.0193
THR 3980.0186
ILE 3990.0210
SER 4000.0191
LEU 4010.0171
LYS 4020.0165
TYR 4030.0129
LEU 4040.0111
ASP 4050.0079
LEU 4060.0075
SER 4070.0052
PHE 4080.0051
ASN 4090.0071
GLY 4100.0089
VAL 4110.0103
ILE 4120.0114
THR 4130.0138
MET 4140.0148
SER 4150.0182
SER 4160.0196
ASN 4170.0193
PHE 4180.0195
LEU 4190.0232
GLY 4200.0249
LEU 4210.0220
GLU 4220.0225
GLN 4230.0225
LEU 4240.0186
GLU 4250.0187
HIS 4260.0152
LEU 4270.0106
ASP 4280.0079
PHE 4290.0067
GLN 4300.0049
HIS 4310.0035
SER 4320.0064
ASN 4330.0071
LEU 4340.0079
LYS 4350.0094
GLN 4360.0110
MET 4370.0088
SER 4380.0079
GLU 4390.0098
PHE 4400.0123
SER 4410.0142
VAL 4420.0132
PHE 4430.0145
LEU 4440.0171
SER 4450.0196
LEU 4460.0185
ARG 4470.0193
ASN 4480.0203
LEU 4490.0164
ILE 4500.0173
TYR 4510.0138
LEU 4520.0093
ASP 4530.0070
ILE 4540.0060
SER 4550.0051
HIS 4560.0037
THR 4570.0045
HIS 4580.0037
THR 4590.0051
ARG 4600.0060
VAL 4610.0076
ALA 4620.0069
PHE 4630.0086
ASN 4640.0121
GLY 4650.0129
ILE 4660.0112
PHE 4670.0102
ASN 4680.0118
GLY 4690.0138
LEU 4700.0139
SER 4710.0165
SER 4720.0150
LEU 4730.0122
GLU 4740.0132
VAL 4750.0107
LEU 4760.0084
LYS 4770.0066
MET 4780.0065
ALA 4790.0062
GLY 4800.0060
ASN 4810.0063
SER 4820.0079
PHE 4830.0105
GLN 4840.0129
GLU 4850.0152
ASN 4860.0135
PHE 4870.0134
LEU 4880.0123
PRO 4890.0135
ASP 4900.0146
ILE 4910.0122
PHE 4920.0115
THR 4930.0141
GLU 4940.0137
LEU 4950.0125
ARG 4960.0151
ASN 4970.0127
LEU 4980.0103
THR 4990.0096
PHE 5000.0075
LEU 5010.0073
ASP 5020.0061
LEU 5030.0075
SER 5040.0067
GLN 5050.0076
CYS 5060.0088
GLN 5070.0097
LEU 5080.0103
GLU 5090.0117
GLN 5100.0125
LEU 5110.0122
SER 5120.0130
PRO 5130.0130
THR 5140.0135
ALA 5150.0118
PHE 5160.0106
ASN 5170.0115
SER 5180.0119
LEU 5190.0103
SER 5200.0108
SER 5210.0099
LEU 5220.0072
GLN 5230.0060
VAL 5240.0055
LEU 5250.0054
ASN 5260.0055
MET 5270.0072
SER 5280.0072
HIS 5290.0081
ASN 5300.0089
ASN 5310.0103
PHE 5320.0069
PHE 5330.0062
SER 5340.0068
LEU 5350.0081
ASP 5360.0089
THR 5370.0050
PHE 5380.0055
PRO 5390.0066
TYR 5400.0073
LYS 5410.0081
CYS 5420.0053
LEU 5430.0049
ASN 5440.0051
SER 5450.0056
LEU 5460.0053
GLN 5470.0087
VAL 5480.0086
LEU 5490.0080
ASP 5500.0083
TYR 5510.0082
SER 5520.0093
LEU 5530.0079
ASN 5540.0086
HIS 5550.0075
ILE 5560.0088
MET 5570.0111
THR 5580.0111
SER 5590.0114
LYS 5600.0092
LYS 5610.0099
GLN 5620.0099
GLU 5630.0104
LEU 5640.0102
GLN 5650.0112
HIS 5660.0111
PHE 5670.0091
PRO 5680.0085
SER 5690.0087
SER 5700.0088
LEU 5710.0096
ALA 5720.0155
PHE 5730.0140
LEU 5740.0126
ASN 5750.0113
LEU 5760.0101
THR 5770.0091
GLN 5780.0064
ASN 5790.0085
ASP 5800.0075
PHE 5810.0108
ALA 5820.0181
CYS 5830.0182
THR 5840.0261
CYS 5850.0308
GLU 5860.0339
HIS 5870.0219
GLN 5880.0208
SER 5890.0227
PHE 5900.0195
LEU 5910.0157
GLN 5920.0176
TRP 5930.0183
ILE 5940.0156
LYS 5950.0152
ASP 5960.0177
GLN 5970.0173
ARG 5980.0153
GLN 5990.0171
LEU 6000.0166
LEU 6010.0136
VAL 6020.0110
GLU 6030.0082
VAL 6040.0076
GLU 6050.0052
ARG 6060.0055
MET 6070.0068
GLU 6080.0065
CYS 6090.0109
ALA 6100.0116
THR 6110.0163
PRO 6120.0248
SER 6130.0253
ASP 6140.0275
LYS 6150.0210
GLN 6160.0161
GLY 6170.0115
MET 6180.0113
PRO 6190.0085
VAL 6200.0122
LEU 6210.0121
SER 6220.0141
LEU 6230.0156
ASN 6240.0162
ILE 6250.0169
THR 6260.0179
CYS 6270.0866
GLU 10.0092
ALA 20.0111
ALA 30.0125
ALA 40.0082
LYS 50.0026
MET 60.0048
GLN 70.0081
ARG 80.0090
LEU 90.0067
VAL 100.0077
LEU 110.0067
LEU 120.0073
LEU 130.0056
ALA 140.0033
ILE 150.0041
SER 160.0047
LEU 170.0033
LEU 180.0086
LEU 190.0100
TYR 200.0059
GLN 210.0075
ASP 220.0125
LEU 230.0099
PRO 240.0044
VAL 250.0033
ARG 260.0250
SER 270.0175
GLU 280.0226
PHE 290.0213
GLU 300.0117
LEU 310.0137
ASP 320.0134
ARG 330.0106
ILE 340.0110
CYS 350.0129
GLY 360.0067
TYR 370.0080
GLY 380.0093
THR 390.0074
ALA 400.0108
ARG 410.0113
CYS 420.0167
ARG 430.0184
LYS 440.0235
LYS 450.0227
CYS 460.0150
ARG 470.0127
SER 480.0137
GLN 490.0111
GLU 500.0119
TYR 510.0179
ARG 520.0209
ILE 530.0193
GLY 540.0240
ARG 550.0279
CYS 560.0264
PRO 570.0302
ASN 580.0306
THR 590.0315
TYR 600.0277
ALA 610.0215
CYS 620.0177
CYS 630.0146
LEU 640.0107
ARG 650.0086
LYS 660.0059
TRP 670.0057
ASP 680.0048
GLU 690.0057
SER 700.0050
LEU 710.0034
LEU 720.0045
ASN 730.0044
ARG 740.0050
THR 750.0062
LYS 760.0049
PRO 770.0094
GLU 780.0108
ALA 790.0157
ALA 800.0168
ALA 810.0118
LYS 820.0110
LYS 830.0097
GLU 840.0077
MET 850.0074
ASN 860.0041
LEU 870.0038
SER 880.0021
VAL 890.0033
GLY 900.0035
LEU 910.0051
GLY 920.0074
GLY 930.0081
GLY 940.0068
SER 950.0047
ASN 960.0023
LEU 970.0016
SER 980.0010
VAL 990.0028
GLY 1000.0042
LEU 1010.0047
GLY 1020.0044
GLU 1030.0059
ILE 1040.0051
GLY 1050.0070
GLY 1060.0028
GLY 1070.0027
SER 1080.0033
LYS 1090.0033
LEU 1100.0037
LEU 1110.0038
ASP 1120.0035
ILE 1130.0026
ASN 1140.0051
LEU 1150.0050
GLY 1160.0043
ARG 1170.0022
GLY 1180.0040
GLY 1190.0038
GLY 1200.0066
SER 1210.0050
MET 1220.0044
VAL 1230.0035
ASP 1240.0029
LEU 1250.0028
THR 1260.0038
PHE 1270.0039
GLY 1280.0042
GLY 1290.0047
VAL 1300.0047
GLY 1310.0061
GLY 1320.0050
GLY 1330.0043
SER 1340.0024
THR 1350.0029
PHE 1360.0008
THR 1370.0015
PHE 1380.0008
PHE 1390.0019
PRO 1400.0017
LEU 1410.0019
VAL 1420.0047
ILE 1430.0084
GLY 1440.0130
GLY 1450.0178
GLY 1460.0047
SER 1470.0031
ASP 1480.0058
ALA 1490.0046
MET 1500.0048
TYR 1510.0043
LEU 1520.0026
GLY 1530.0022
PHE 1540.0019
ALA 1550.0028
ALA 1560.0030
GLY 1570.0049
GLY 1580.0050
GLY 1590.0082
SER 1600.0105
ALA 1610.0078
GLY 1620.0061
GLY 1630.0035
GLU 1640.0036
ASN 1650.0016
HIS 1660.0028
VAL 1670.0028
ALA 1680.0029
PHE 1690.0034
GLY 1700.0038
PRO 1710.0063
GLY 1720.0069
PRO 1730.0064
GLY 1740.0050
VAL 1750.0048
ASP 1760.0045
LEU 1770.0009
THR 1780.0048
PHE 1790.0068
GLY 1800.0114
GLY 1810.0222
VAL 1820.0191
GLN 1830.0124
PHE 1840.0072
ALA 1850.0022
MET 1860.0096
VAL 1870.0111
ASN 1880.0051
ASN 1890.0076
GLY 1900.0035
PRO 1910.0063
GLY 1920.0093
PRO 1930.0116
GLY 1940.0075
GLU 1950.0081
SER 1960.0159
PHE 1970.0109
THR 1980.0038
ALA 1990.0061
GLN 2000.0106
PRO 2010.0116
ALA 2020.0045
ASP 2030.0114
MET 2040.0168
GLN 2050.0093
ALA 2060.0128
GLY 2070.0113
ILE 2080.0151
LYS 2090.0101
GLY 2100.0191
PRO 2110.0080
GLY 2120.0092
PRO 2130.0094
GLY 2140.0079
GLY 2150.0053
SER 2160.0148
ILE 2170.0143
GLN 2180.0163
VAL 2190.0166
ILE 2200.0184
ASN 2210.0256
GLY 2220.0236
SER 2230.0220
THR 2240.0216
ILE 2250.0238
GLY 2260.0151
THR 2270.0199
GLY 2280.0248
SER 2290.0296
LYS 2300.0189
LYS 2310.0123
THR 2320.0114
ILE 2330.0116
LEU 2340.0118
ILE 2350.0154
TYR 2360.0114
SER 2370.0092
ILE 2380.0068
ILE 2390.0079
GLY 2400.0061
VAL 2410.0082
LYS 2420.0092
LYS 2430.0107
GLY 2440.0114
THR 2450.0104
LEU 2460.0096
ALA 2470.0109
TRP 2480.0120
ALA 2490.0132
ARG 2500.0154
THR 2510.0151
GLY 2520.0107
PHE 2530.0096
SER 2540.0073
PRO 2550.0075
ALA 2560.0122
LYS 2570.0059
LYS 2580.0047
LEU 2590.0056
ASN 2600.0100
ALA 2610.0310
GLY 2620.0270
VAL 2630.0237
VAL 2640.0191
ARG 2650.0175
VAL 2660.0123
PHE 2670.0147
PHE 2680.0121
LEU 2690.0177
ASN 2700.0191
GLN 2710.0134
LYS 2720.0107
LYS 2730.0166
ALA 2740.0172
LYS 2750.0120
ASP 2760.0138
VAL 2770.0139
LEU 2780.0119
ARG 2790.0074
LYS 2800.0080
THR 2810.0088
SER 2820.0025
ARG 2830.0037
PRO 2840.0108
MET 2850.0125
VAL 2860.0151
ASP 2870.0095
LEU 2880.0064
THR 2890.0030
PHE 2900.0050
GLY 2910.0065
GLY 2920.0137

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.