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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 84  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1014
GLU 270.0066
PRO 280.0066
CYS 290.0048
VAL 300.0060
GLU 310.0057
VAL 320.0066
VAL 330.0057
PRO 340.0046
ASN 350.0022
ILE 360.0025
THR 370.0031
TYR 380.0023
GLN 390.0028
CYS 400.0016
MET 410.0020
GLU 420.0021
LEU 430.0021
ASN 440.0015
PHE 450.0014
TYR 460.0018
LYS 470.0025
ILE 480.0022
PRO 490.0026
ASP 500.0046
ASN 510.0052
LEU 520.0030
PRO 530.0024
PHE 540.0032
SER 550.0022
THR 560.0013
LYS 570.0026
ASN 580.0026
LEU 590.0019
ASP 600.0019
LEU 610.0013
SER 620.0018
PHE 630.0016
ASN 640.0013
PRO 650.0013
LEU 660.0017
ARG 670.0019
HIS 680.0018
LEU 690.0019
GLY 700.0021
SER 710.0021
TYR 720.0021
SER 730.0021
PHE 740.0024
PHE 750.0029
SER 760.0034
PHE 770.0029
PRO 780.0038
GLU 790.0035
LEU 800.0030
GLN 810.0033
VAL 820.0027
LEU 830.0025
ASP 840.0023
LEU 850.0022
SER 860.0021
ARG 870.0021
CYS 880.0022
GLU 890.0019
ILE 900.0019
GLN 910.0017
THR 920.0016
ILE 930.0014
GLU 940.0017
ASP 950.0014
GLY 960.0014
ALA 970.0017
TYR 980.0019
GLN 990.0020
SER 1000.0025
LEU 1010.0025
SER 1020.0024
HIS 1030.0029
LEU 1040.0024
SER 1050.0025
THR 1060.0021
LEU 1070.0015
ILE 1080.0016
LEU 1090.0013
THR 1100.0014
GLY 1110.0014
ASN 1120.0013
PRO 1130.0011
ILE 1140.0011
GLN 1150.0015
SER 1160.0018
LEU 1170.0012
ALA 1180.0017
LEU 1190.0018
GLY 1200.0013
ALA 1210.0010
PHE 1220.0008
SER 1230.0008
GLY 1240.0010
LEU 1250.0012
SER 1260.0012
SER 1270.0011
LEU 1280.0010
GLN 1290.0017
LYS 1300.0017
LEU 1310.0012
VAL 1320.0013
ALA 1330.0011
VAL 1340.0016
GLU 1350.0015
THR 1360.0010
ASN 1370.0015
LEU 1380.0019
ALA 1390.0022
SER 1400.0025
LEU 1410.0027
GLU 1420.0026
ASN 1430.0022
PHE 1440.0020
PRO 1450.0019
ILE 1460.0019
GLY 1470.0024
HIS 1480.0021
LEU 1490.0017
LYS 1500.0022
THR 1510.0019
LEU 1520.0019
LYS 1530.0023
GLU 1540.0023
LEU 1550.0021
ASN 1560.0021
VAL 1570.0023
ALA 1580.0025
HIS 1590.0025
ASN 1600.0024
LEU 1610.0025
ILE 1620.0027
GLN 1630.0026
SER 1640.0024
PHE 1650.0024
LYS 1660.0024
LEU 1670.0028
PRO 1680.0028
GLU 1690.0030
TYR 1700.0029
PHE 1710.0030
SER 1720.0034
ASN 1730.0030
LEU 1740.0027
THR 1750.0030
ASN 1760.0027
LEU 1770.0023
GLU 1780.0024
HIS 1790.0025
LEU 1800.0025
ASP 1810.0026
LEU 1820.0024
SER 1830.0024
SER 1840.0025
ASN 1850.0025
LYS 1860.0026
ILE 1870.0021
GLN 1880.0019
SER 1890.0018
ILE 1900.0019
TYR 1910.0019
CYS 1920.0020
THR 1930.0020
ASP 1940.0021
LEU 1950.0023
ARG 1960.0022
VAL 1970.0024
LEU 1980.0025
HIS 1990.0023
GLN 2000.0024
MET 2010.0029
PRO 2020.0023
LEU 2030.0023
LEU 2040.0020
ASN 2050.0019
LEU 2060.0017
SER 2070.0015
LEU 2080.0014
ASP 2090.0015
LEU 2100.0013
SER 2110.0014
LEU 2120.0015
ASN 2130.0014
PRO 2140.0014
MET 2150.0014
ASN 2160.0015
PHE 2170.0019
ILE 2180.0020
GLN 2190.0022
PRO 2200.0027
GLY 2210.0029
ALA 2220.0024
PHE 2230.0026
LYS 2240.0031
GLU 2250.0035
ILE 2260.0031
ARG 2270.0021
LEU 2280.0018
HIS 2290.0020
LYS 2300.0017
LEU 2310.0014
THR 2320.0015
LEU 2330.0016
ARG 2340.0015
ASN 2350.0015
ASN 2360.0017
PHE 2370.0022
ASP 2380.0022
SER 2390.0023
LEU 2400.0022
ASN 2410.0022
VAL 2420.0022
MET 2430.0023
LYS 2440.0023
THR 2450.0023
CYS 2460.0023
ILE 2470.0026
GLN 2480.0027
GLY 2490.0026
LEU 2500.0027
ALA 2510.0029
GLY 2520.0028
LEU 2530.0027
GLU 2540.0028
VAL 2550.0025
HIS 2560.0027
ARG 2570.0026
LEU 2580.0024
VAL 2590.0023
LEU 2600.0021
GLY 2610.0019
GLU 2620.0014
PHE 2630.0018
ARG 2640.0023
ASN 2650.0026
GLU 2660.0024
GLY 2670.0025
ASN 2680.0022
LEU 2690.0021
GLU 2700.0021
LYS 2710.0019
PHE 2720.0018
ASP 2730.0018
LYS 2740.0017
SER 2750.0023
ALA 2760.0023
LEU 2770.0023
GLU 2780.0025
GLY 2790.0029
LEU 2800.0027
CYS 2810.0028
ASN 2820.0028
LEU 2830.0028
THR 2840.0030
ILE 2850.0028
GLU 2860.0030
GLU 2870.0026
PHE 2880.0024
ARG 2890.0024
LEU 2900.0022
ALA 2910.0026
TYR 2920.0021
LEU 2930.0017
ASP 2940.0015
TYR 2950.0011
TYR 2960.0007
LEU 2970.0011
ASP 2980.0010
GLY 2990.0009
ILE 3000.0007
ILE 3010.0004
ASP 3020.0012
LEU 3030.0013
PHE 3040.0015
ASN 3050.0015
CYS 3060.0021
LEU 3070.0019
THR 3080.0015
ASN 3090.0019
VAL 3100.0022
SER 3110.0024
SER 3120.0024
PHE 3130.0021
SER 3140.0025
LEU 3150.0024
VAL 3160.0031
SER 3170.0033
VAL 3180.0027
THR 3190.0026
ILE 3200.0021
GLU 3210.0023
ARG 3220.0023
VAL 3230.0024
LYS 3240.0024
ASP 3250.0014
PHE 3260.0017
SER 3270.0015
TYR 3280.0007
ASN 3290.0004
PHE 3300.0007
GLY 3310.0011
TRP 3320.0014
GLN 3330.0017
HIS 3340.0021
LEU 3350.0021
GLU 3360.0027
LEU 3370.0032
VAL 3380.0041
ASN 3390.0048
CYS 3400.0043
LYS 3410.0047
PHE 3420.0044
GLY 3430.0047
GLN 3440.0045
PHE 3450.0041
PRO 3460.0034
THR 3470.0029
LEU 3480.0023
LYS 3490.0017
LEU 3500.0012
LYS 3510.0006
SER 3520.0008
LEU 3530.0012
LYS 3540.0014
ARG 3550.0019
LEU 3560.0021
THR 3570.0029
PHE 3580.0035
THR 3590.0041
SER 3600.0049
ASN 3610.0049
LYS 3620.0059
GLY 3630.0060
GLY 3640.0057
ASN 3650.0050
ALA 3660.0048
PHE 3670.0038
SER 3680.0037
GLU 3690.0031
VAL 3700.0026
ASP 3710.0019
LEU 3720.0016
PRO 3730.0011
SER 3740.0008
LEU 3750.0012
GLU 3760.0011
PHE 3770.0013
LEU 3780.0018
ASP 3790.0022
LEU 3800.0026
SER 3810.0029
ARG 3820.0034
ASN 3830.0038
GLY 3840.0034
LEU 3850.0034
SER 3860.0035
PHE 3870.0025
LYS 3880.0032
GLY 3890.0032
CYS 3900.0021
CYS 3910.0016
SER 3920.0021
GLN 3930.0019
SER 3940.0027
ASP 3950.0025
PHE 3960.0021
GLY 3970.0018
THR 3980.0013
ILE 3990.0011
SER 4000.0006
LEU 4010.0008
LYS 4020.0006
TYR 4030.0008
LEU 4040.0009
ASP 4050.0012
LEU 4060.0014
SER 4070.0014
PHE 4080.0015
ASN 4090.0013
GLY 4100.0013
VAL 4110.0017
ILE 4120.0014
THR 4130.0021
MET 4140.0021
SER 4150.0026
SER 4160.0023
ASN 4170.0023
PHE 4180.0019
LEU 4190.0022
GLY 4200.0020
LEU 4210.0016
GLU 4220.0018
GLN 4230.0014
LEU 4240.0013
GLU 4250.0014
HIS 4260.0012
LEU 4270.0013
ASP 4280.0016
PHE 4290.0014
GLN 4300.0021
HIS 4310.0021
SER 4320.0011
ASN 4330.0014
LEU 4340.0016
LYS 4350.0020
GLN 4360.0024
MET 4370.0020
SER 4380.0023
GLU 4390.0023
PHE 4400.0023
SER 4410.0022
VAL 4420.0022
PHE 4430.0021
LEU 4440.0023
SER 4450.0022
LEU 4460.0021
ARG 4470.0022
ASN 4480.0021
LEU 4490.0021
ILE 4500.0021
TYR 4510.0020
LEU 4520.0020
ASP 4530.0024
ILE 4540.0024
SER 4550.0029
HIS 4560.0031
THR 4570.0029
HIS 4580.0032
THR 4590.0026
ARG 4600.0026
VAL 4610.0021
ALA 4620.0019
PHE 4630.0017
ASN 4640.0015
GLY 4650.0017
ILE 4660.0020
PHE 4670.0019
ASN 4680.0018
GLY 4690.0019
LEU 4700.0020
SER 4710.0019
SER 4720.0020
LEU 4730.0020
GLU 4740.0019
VAL 4750.0020
LEU 4760.0020
LYS 4770.0023
MET 4780.0024
ALA 4790.0027
GLY 4800.0030
ASN 4810.0028
SER 4820.0030
PHE 4830.0026
GLN 4840.0034
GLU 4850.0037
ASN 4860.0027
PHE 4870.0025
LEU 4880.0016
PRO 4890.0017
ASP 4900.0011
ILE 4910.0012
PHE 4920.0007
THR 4930.0003
GLU 4940.0007
LEU 4950.0011
ARG 4960.0012
ASN 4970.0015
LEU 4980.0013
THR 4990.0016
PHE 5000.0015
LEU 5010.0011
ASP 5020.0013
LEU 5030.0014
SER 5040.0017
GLN 5050.0022
CYS 5060.0022
GLN 5070.0022
LEU 5080.0018
GLU 5090.0022
GLN 5100.0024
LEU 5110.0020
SER 5120.0019
PRO 5130.0021
THR 5140.0018
ALA 5150.0011
PHE 5160.0010
ASN 5170.0014
SER 5180.0012
LEU 5190.0011
SER 5200.0019
SER 5210.0020
LEU 5220.0014
GLN 5230.0017
VAL 5240.0013
LEU 5250.0007
ASN 5260.0007
MET 5270.0005
SER 5280.0005
HIS 5290.0009
ASN 5300.0010
ASN 5310.0014
PHE 5320.0010
PHE 5330.0012
SER 5340.0015
LEU 5350.0015
ASP 5360.0017
THR 5370.0017
PHE 5380.0020
PRO 5390.0017
TYR 5400.0017
LYS 5410.0021
CYS 5420.0022
LEU 5430.0019
ASN 5440.0025
SER 5450.0023
LEU 5460.0018
GLN 5470.0017
VAL 5480.0014
LEU 5490.0013
ASP 5500.0011
TYR 5510.0011
SER 5520.0012
LEU 5530.0011
ASN 5540.0011
HIS 5550.0011
ILE 5560.0013
MET 5570.0013
THR 5580.0013
SER 5590.0013
LYS 5600.0013
LYS 5610.0013
GLN 5620.0009
GLU 5630.0013
LEU 5640.0011
GLN 5650.0013
HIS 5660.0017
PHE 5670.0017
PRO 5680.0018
SER 5690.0020
SER 5700.0019
LEU 5710.0016
ALA 5720.0016
PHE 5730.0017
LEU 5740.0015
ASN 5750.0017
LEU 5760.0015
THR 5770.0022
GLN 5780.0023
ASN 5790.0020
ASP 5800.0021
PHE 5810.0017
ALA 5820.0035
CYS 5830.0025
THR 5840.0040
CYS 5850.0050
GLU 5860.0057
HIS 5870.0034
GLN 5880.0034
SER 5890.0034
PHE 5900.0018
LEU 5910.0018
GLN 5920.0026
TRP 5930.0018
ILE 5940.0018
LYS 5950.0031
ASP 5960.0033
GLN 5970.0021
ARG 5980.0025
GLN 5990.0030
LEU 6000.0025
LEU 6010.0023
VAL 6020.0023
GLU 6030.0026
VAL 6040.0024
GLU 6050.0029
ARG 6060.0029
MET 6070.0029
GLU 6080.0030
CYS 6090.0027
ALA 6100.0041
THR 6110.0046
PRO 6120.0057
SER 6130.0069
ASP 6140.0054
LYS 6150.0035
GLN 6160.0048
GLY 6170.0043
MET 6180.0029
PRO 6190.0030
VAL 6200.0018
LEU 6210.0028
SER 6220.0047
LEU 6230.0031
ASN 6240.0049
ILE 6250.0050
THR 6260.0073
CYS 6270.0180
GLU 10.0017
ALA 20.0015
ALA 30.0005
ALA 40.0003
LYS 50.0009
MET 60.0010
GLN 70.0010
ARG 80.0010
LEU 90.0012
VAL 100.0013
LEU 110.0009
LEU 120.0010
LEU 130.0008
ALA 140.0005
ILE 150.0005
SER 160.0008
LEU 170.0012
LEU 180.0008
LEU 190.0004
TYR 200.0011
GLN 210.0011
ASP 220.0007
LEU 230.0003
PRO 240.0003
VAL 250.0009
ARG 260.0010
SER 270.0014
GLU 280.0019
PHE 290.0024
GLU 300.0023
LEU 310.0023
ASP 320.0022
ARG 330.0021
ILE 340.0021
CYS 350.0020
GLY 360.0016
TYR 370.0015
GLY 380.0015
THR 390.0015
ALA 400.0015
ARG 410.0011
CYS 420.0010
ARG 430.0021
LYS 440.0033
LYS 450.0036
CYS 460.0027
ARG 470.0027
SER 480.0027
GLN 490.0025
GLU 500.0024
TYR 510.0028
ARG 520.0025
ILE 530.0021
GLY 540.0022
ARG 550.0017
CYS 560.0007
PRO 570.0013
ASN 580.0010
THR 590.0011
TYR 600.0017
ALA 610.0014
CYS 620.0011
CYS 630.0016
LEU 640.0016
ARG 650.0021
LYS 660.0033
TRP 670.0042
ASP 680.0032
GLU 690.0031
SER 700.0027
LEU 710.0038
LEU 720.0042
ASN 730.0032
ARG 740.0034
THR 750.0049
LYS 760.0053
PRO 770.0079
GLU 780.0067
ALA 790.0103
ALA 800.0125
ALA 810.0125
LYS 820.0099
LYS 830.0089
GLU 840.0073
MET 850.0055
ASN 860.0068
LEU 870.0062
SER 880.0043
VAL 890.0035
GLY 900.0023
LEU 910.0093
GLY 920.0329
GLY 930.0617
GLY 940.0604
SER 950.0404
ASN 960.0056
LEU 970.0052
SER 980.0040
VAL 990.0071
GLY 1000.0089
LEU 1010.0081
GLY 1020.0095
GLU 1030.0084
ILE 1040.0050
GLY 1050.0041
GLY 1060.0118
GLY 1070.0104
SER 1080.0090
LYS 1090.0058
LEU 1100.0060
LEU 1110.0075
ASP 1120.0100
ILE 1130.0088
ASN 1140.0139
LEU 1150.0119
GLY 1160.0216
ARG 1170.0276
GLY 1180.0270
GLY 1190.0261
GLY 1200.0229
SER 1210.0101
MET 1220.0090
VAL 1230.0071
ASP 1240.0061
LEU 1250.0044
THR 1260.0104
PHE 1270.0097
GLY 1280.0137
GLY 1290.0188
VAL 1300.0229
GLY 1310.1014
GLY 1320.0807
GLY 1330.0581
SER 1340.0347
THR 1350.0202
PHE 1360.0175
THR 1370.0156
PHE 1380.0124
PHE 1390.0117
PRO 1400.0101
LEU 1410.0107
VAL 1420.0183
ILE 1430.0222
GLY 1440.0306
GLY 1450.0378
GLY 1460.0220
SER 1470.0212
ASP 1480.0178
ALA 1490.0181
MET 1500.0140
TYR 1510.0108
LEU 1520.0123
GLY 1530.0151
PHE 1540.0195
ALA 1550.0247
ALA 1560.0427
GLY 1570.0314
GLY 1580.0203
GLY 1590.0480
SER 1600.0789
ALA 1610.0405
GLY 1620.0350
GLY 1630.0215
GLU 1640.0061
ASN 1650.0094
HIS 1660.0039
VAL 1670.0048
ALA 1680.0052
PHE 1690.0063
GLY 1700.0068
PRO 1710.0104
GLY 1720.0158
PRO 1730.0176
GLY 1740.0160
VAL 1750.0107
ASP 1760.0078
LEU 1770.0084
THR 1780.0143
PHE 1790.0221
GLY 1800.0324
GLY 1810.0565
VAL 1820.0499
GLN 1830.0335
PHE 1840.0222
ALA 1850.0119
MET 1860.0218
VAL 1870.0297
ASN 1880.0236
ASN 1890.0369
GLY 1900.0355
PRO 1910.0353
GLY 1920.0524
PRO 1930.0502
GLY 1940.0349
GLU 1950.0460
SER 1960.0830
PHE 1970.0584
THR 1980.0116
ALA 1990.0246
GLN 2000.0559
PRO 2010.0598
ALA 2020.0276
ASP 2030.0600
MET 2040.0706
GLN 2050.0224
ALA 2060.0636
GLY 2070.0462
ILE 2080.0405
LYS 2090.0170
GLY 2100.0142
PRO 2110.0400
GLY 2120.0392
PRO 2130.0212
GLY 2140.0214
GLY 2150.0328
SER 2160.0340
ILE 2170.0307
GLN 2180.0174
VAL 2190.0106
ILE 2200.0151
ASN 2210.0114
GLY 2220.0098
SER 2230.0066
THR 2240.0110
ILE 2250.0115
GLY 2260.0083
THR 2270.0094
GLY 2280.0134
SER 2290.0186
LYS 2300.0116
LYS 2310.0087
THR 2320.0099
ILE 2330.0107
LEU 2340.0108
ILE 2350.0138
TYR 2360.0076
SER 2370.0114
ILE 2380.0094
ILE 2390.0114
GLY 2400.0097
VAL 2410.0018
LYS 2420.0021
LYS 2430.0022
GLY 2440.0040
THR 2450.0045
LEU 2460.0057
ALA 2470.0094
TRP 2480.0100
ALA 2490.0137
ARG 2500.0142
THR 2510.0153
GLY 2520.0097
PHE 2530.0058
SER 2540.0016
PRO 2550.0067
ALA 2560.0095
LYS 2570.0057
LYS 2580.0043
LEU 2590.0062
ASN 2600.0083
ALA 2610.0212
GLY 2620.0149
VAL 2630.0130
VAL 2640.0074
ARG 2650.0073
VAL 2660.0043
PHE 2670.0042
PHE 2680.0039
LEU 2690.0053
ASN 2700.0077
GLN 2710.0060
LYS 2720.0050
LYS 2730.0058
ALA 2740.0051
LYS 2750.0031
ASP 2760.0031
VAL 2770.0028
LEU 2780.0020
ARG 2790.0007
LYS 2800.0017
THR 2810.0018
SER 2820.0029
ARG 2830.0019
PRO 2840.0034
MET 2850.0036
VAL 2860.0019
ASP 2870.0011
LEU 2880.0012
THR 2890.0007
PHE 2900.0003
GLY 2910.0013
GLY 2920.0026

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.