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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 85  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0631
GLU 270.0114
PRO 280.0089
CYS 290.0067
VAL 300.0107
GLU 310.0138
VAL 320.0174
VAL 330.0183
PRO 340.0170
ASN 350.0122
ILE 360.0116
THR 370.0106
TYR 380.0067
GLN 390.0062
CYS 400.0024
MET 410.0057
GLU 420.0066
LEU 430.0050
ASN 440.0065
PHE 450.0056
TYR 460.0074
LYS 470.0088
ILE 480.0063
PRO 490.0037
ASP 500.0070
ASN 510.0081
LEU 520.0053
PRO 530.0050
PHE 540.0027
SER 550.0036
THR 560.0041
LYS 570.0062
ASN 580.0068
LEU 590.0052
ASP 600.0060
LEU 610.0059
SER 620.0073
PHE 630.0079
ASN 640.0076
PRO 650.0082
LEU 660.0076
ARG 670.0061
HIS 680.0055
LEU 690.0055
GLY 700.0056
SER 710.0054
TYR 720.0054
SER 730.0054
PHE 740.0052
PHE 750.0048
SER 760.0045
PHE 770.0040
PRO 780.0050
GLU 790.0047
LEU 800.0050
GLN 810.0063
VAL 820.0062
LEU 830.0061
ASP 840.0060
LEU 850.0061
SER 860.0062
ARG 870.0063
CYS 880.0065
GLU 890.0052
ILE 900.0051
GLN 910.0042
THR 920.0039
ILE 930.0039
GLU 940.0041
ASP 950.0035
GLY 960.0042
ALA 970.0051
TYR 980.0052
GLN 990.0054
SER 1000.0057
LEU 1010.0055
SER 1020.0058
HIS 1030.0060
LEU 1040.0051
SER 1050.0046
THR 1060.0040
LEU 1070.0039
ILE 1080.0039
LEU 1090.0033
THR 1100.0038
GLY 1110.0038
ASN 1120.0035
PRO 1130.0021
ILE 1140.0017
GLN 1150.0020
SER 1160.0028
LEU 1170.0020
ALA 1180.0028
LEU 1190.0026
GLY 1200.0026
ALA 1210.0026
PHE 1220.0024
SER 1230.0031
GLY 1240.0037
LEU 1250.0033
SER 1260.0036
SER 1270.0027
LEU 1280.0019
GLN 1290.0035
LYS 1300.0038
LEU 1310.0027
VAL 1320.0031
ALA 1330.0028
VAL 1340.0040
GLU 1350.0040
THR 1360.0028
ASN 1370.0040
LEU 1380.0045
ALA 1390.0052
SER 1400.0057
LEU 1410.0058
GLU 1420.0055
ASN 1430.0048
PHE 1440.0043
PRO 1450.0037
ILE 1460.0038
GLY 1470.0041
HIS 1480.0031
LEU 1490.0031
LYS 1500.0036
THR 1510.0037
LEU 1520.0041
LYS 1530.0052
GLU 1540.0053
LEU 1550.0050
ASN 1560.0053
VAL 1570.0054
ALA 1580.0059
HIS 1590.0059
ASN 1600.0057
LEU 1610.0060
ILE 1620.0057
GLN 1630.0049
SER 1640.0046
PHE 1650.0044
LYS 1660.0046
LEU 1670.0059
PRO 1680.0059
GLU 1690.0060
TYR 1700.0059
PHE 1710.0060
SER 1720.0063
ASN 1730.0057
LEU 1740.0057
THR 1750.0060
ASN 1760.0059
LEU 1770.0054
GLU 1780.0054
HIS 1790.0056
LEU 1800.0057
ASP 1810.0058
LEU 1820.0049
SER 1830.0049
SER 1840.0049
ASN 1850.0049
LYS 1860.0048
ILE 1870.0033
GLN 1880.0019
SER 1890.0015
ILE 1900.0021
TYR 1910.0015
CYS 1920.0013
THR 1930.0027
ASP 1940.0035
LEU 1950.0037
ARG 1960.0039
VAL 1970.0049
LEU 1980.0046
HIS 1990.0038
GLN 2000.0049
MET 2010.0055
PRO 2020.0045
LEU 2030.0052
LEU 2040.0048
ASN 2050.0046
LEU 2060.0039
SER 2070.0034
LEU 2080.0028
ASP 2090.0029
LEU 2100.0022
SER 2110.0026
LEU 2120.0029
ASN 2130.0027
PRO 2140.0023
MET 2150.0024
ASN 2160.0021
PHE 2170.0025
ILE 2180.0032
GLN 2190.0025
PRO 2200.0042
GLY 2210.0041
ALA 2220.0031
PHE 2230.0044
LYS 2240.0049
GLU 2250.0055
ILE 2260.0054
ARG 2270.0040
LEU 2280.0039
HIS 2290.0043
LYS 2300.0040
LEU 2310.0036
THR 2320.0039
LEU 2330.0042
ARG 2340.0042
ASN 2350.0046
ASN 2360.0050
PHE 2370.0059
ASP 2380.0059
SER 2390.0057
LEU 2400.0055
ASN 2410.0058
VAL 2420.0057
MET 2430.0058
LYS 2440.0059
THR 2450.0059
CYS 2460.0060
ILE 2470.0065
GLN 2480.0064
GLY 2490.0060
LEU 2500.0064
ALA 2510.0067
GLY 2520.0065
LEU 2530.0064
GLU 2540.0065
VAL 2550.0062
HIS 2560.0062
ARG 2570.0064
LEU 2580.0060
VAL 2590.0057
LEU 2600.0053
GLY 2610.0049
GLU 2620.0043
PHE 2630.0054
ARG 2640.0063
ASN 2650.0075
GLU 2660.0072
GLY 2670.0072
ASN 2680.0058
LEU 2690.0052
GLU 2700.0048
LYS 2710.0041
PHE 2720.0034
ASP 2730.0038
LYS 2740.0041
SER 2750.0058
ALA 2760.0056
LEU 2770.0057
GLU 2780.0064
GLY 2790.0077
LEU 2800.0072
CYS 2810.0073
ASN 2820.0074
LEU 2830.0075
THR 2840.0075
ILE 2850.0070
GLU 2860.0070
GLU 2870.0061
PHE 2880.0054
ARG 2890.0053
LEU 2900.0046
ALA 2910.0054
TYR 2920.0050
LEU 2930.0034
ASP 2940.0032
TYR 2950.0013
TYR 2960.0011
LEU 2970.0024
ASP 2980.0044
GLY 2990.0037
ILE 3000.0017
ILE 3010.0035
ASP 3020.0039
LEU 3030.0029
PHE 3040.0030
ASN 3050.0040
CYS 3060.0058
LEU 3070.0046
THR 3080.0037
ASN 3090.0049
VAL 3100.0053
SER 3110.0056
SER 3120.0051
PHE 3130.0039
SER 3140.0047
LEU 3150.0042
VAL 3160.0059
SER 3170.0068
VAL 3180.0050
THR 3190.0053
ILE 3200.0050
GLU 3210.0064
ARG 3220.0065
VAL 3230.0062
LYS 3240.0067
ASP 3250.0044
PHE 3260.0040
SER 3270.0046
TYR 3280.0030
ASN 3290.0018
PHE 3300.0008
GLY 3310.0024
TRP 3320.0027
GLN 3330.0039
HIS 3340.0046
LEU 3350.0041
GLU 3360.0053
LEU 3370.0070
VAL 3380.0086
ASN 3390.0098
CYS 3400.0087
LYS 3410.0095
PHE 3420.0092
GLY 3430.0098
GLN 3440.0098
PHE 3450.0091
PRO 3460.0077
THR 3470.0067
LEU 3480.0058
LYS 3490.0050
LEU 3500.0041
LYS 3510.0037
SER 3520.0029
LEU 3530.0038
LYS 3540.0048
ARG 3550.0054
LEU 3560.0056
THR 3570.0072
PHE 3580.0081
THR 3590.0091
SER 3600.0104
ASN 3610.0103
LYS 3620.0116
GLY 3630.0115
GLY 3640.0110
ASN 3650.0100
ALA 3660.0095
PHE 3670.0083
SER 3680.0080
GLU 3690.0076
VAL 3700.0075
ASP 3710.0071
LEU 3720.0067
PRO 3730.0068
SER 3740.0066
LEU 3750.0070
GLU 3760.0075
PHE 3770.0065
LEU 3780.0065
ASP 3790.0067
LEU 3800.0067
SER 3810.0067
ARG 3820.0075
ASN 3830.0078
GLY 3840.0053
LEU 3850.0064
SER 3860.0063
PHE 3870.0045
LYS 3880.0075
GLY 3890.0079
CYS 3900.0039
CYS 3910.0029
SER 3920.0059
GLN 3930.0075
SER 3940.0084
ASP 3950.0073
PHE 3960.0079
GLY 3970.0083
THR 3980.0083
ILE 3990.0087
SER 4000.0087
LEU 4010.0079
LYS 4020.0070
TYR 4030.0065
LEU 4040.0051
ASP 4050.0048
LEU 4060.0033
SER 4070.0056
PHE 4080.0052
ASN 4090.0015
GLY 4100.0030
VAL 4110.0059
ILE 4120.0040
THR 4130.0066
MET 4140.0053
SER 4150.0069
SER 4160.0045
ASN 4170.0025
PHE 4180.0020
LEU 4190.0046
GLY 4200.0069
LEU 4210.0057
GLU 4220.0049
GLN 4230.0071
LEU 4240.0056
GLU 4250.0076
HIS 4260.0071
LEU 4270.0056
ASP 4280.0070
PHE 4290.0063
GLN 4300.0091
HIS 4310.0096
SER 4320.0067
ASN 4330.0083
LEU 4340.0078
LYS 4350.0095
GLN 4360.0102
MET 4370.0085
SER 4380.0105
GLU 4390.0096
PHE 4400.0072
SER 4410.0056
VAL 4420.0051
PHE 4430.0042
LEU 4440.0025
SER 4450.0014
LEU 4460.0040
ARG 4470.0048
ASN 4480.0067
LEU 4490.0069
ILE 4500.0097
TYR 4510.0101
LEU 4520.0096
ASP 4530.0107
ILE 4540.0106
SER 4550.0122
HIS 4560.0127
THR 4570.0123
HIS 4580.0138
THR 4590.0118
ARG 4600.0123
VAL 4610.0105
ALA 4620.0099
PHE 4630.0088
ASN 4640.0079
GLY 4650.0074
ILE 4660.0085
PHE 4670.0081
ASN 4680.0066
GLY 4690.0059
LEU 4700.0073
SER 4710.0071
SER 4720.0079
LEU 4730.0089
GLU 4740.0102
VAL 4750.0114
LEU 4760.0112
LYS 4770.0119
MET 4780.0118
ALA 4790.0127
GLY 4800.0133
ASN 4810.0125
SER 4820.0120
PHE 4830.0099
GLN 4840.0111
GLU 4850.0104
ASN 4860.0080
PHE 4870.0074
LEU 4880.0061
PRO 4890.0066
ASP 4900.0055
ILE 4910.0083
PHE 4920.0073
THR 4930.0063
GLU 4940.0072
LEU 4950.0080
ARG 4960.0074
ASN 4970.0084
LEU 4980.0087
THR 4990.0096
PHE 5000.0102
LEU 5010.0092
ASP 5020.0090
LEU 5030.0085
SER 5040.0087
GLN 5050.0094
CYS 5060.0092
GLN 5070.0076
LEU 5080.0054
GLU 5090.0050
GLN 5100.0050
LEU 5110.0036
SER 5120.0039
PRO 5130.0031
THR 5140.0019
ALA 5150.0027
PHE 5160.0036
ASN 5170.0030
SER 5180.0045
LEU 5190.0059
SER 5200.0072
SER 5210.0091
LEU 5220.0077
GLN 5230.0095
VAL 5240.0085
LEU 5250.0062
ASN 5260.0063
MET 5270.0031
SER 5280.0034
HIS 5290.0039
ASN 5300.0035
ASN 5310.0036
PHE 5320.0024
PHE 5330.0043
SER 5340.0053
LEU 5350.0056
ASP 5360.0058
THR 5370.0067
PHE 5380.0071
PRO 5390.0052
TYR 5400.0066
LYS 5410.0088
CYS 5420.0078
LEU 5430.0079
ASN 5440.0105
SER 5450.0110
LEU 5460.0088
GLN 5470.0093
VAL 5480.0075
LEU 5490.0060
ASP 5500.0048
TYR 5510.0038
SER 5520.0043
LEU 5530.0044
ASN 5540.0044
HIS 5550.0045
ILE 5560.0045
MET 5570.0059
THR 5580.0065
SER 5590.0068
LYS 5600.0068
LYS 5610.0072
GLN 5620.0082
GLU 5630.0088
LEU 5640.0079
GLN 5650.0092
HIS 5660.0093
PHE 5670.0088
PRO 5680.0100
SER 5690.0117
SER 5700.0113
LEU 5710.0092
ALA 5720.0057
PHE 5730.0054
LEU 5740.0053
ASN 5750.0054
LEU 5760.0053
THR 5770.0079
GLN 5780.0084
ASN 5790.0074
ASP 5800.0072
PHE 5810.0054
ALA 5820.0099
CYS 5830.0060
THR 5840.0103
CYS 5850.0126
GLU 5860.0145
HIS 5870.0084
GLN 5880.0066
SER 5890.0057
PHE 5900.0031
LEU 5910.0010
GLN 5920.0028
TRP 5930.0007
ILE 5940.0031
LYS 5950.0046
ASP 5960.0044
GLN 5970.0037
ARG 5980.0047
GLN 5990.0055
LEU 6000.0054
LEU 6010.0057
VAL 6020.0082
GLU 6030.0096
VAL 6040.0097
GLU 6050.0112
ARG 6060.0107
MET 6070.0096
GLU 6080.0089
CYS 6090.0071
ALA 6100.0116
THR 6110.0132
PRO 6120.0168
SER 6130.0198
ASP 6140.0160
LYS 6150.0101
GLN 6160.0131
GLY 6170.0106
MET 6180.0062
PRO 6190.0077
VAL 6200.0044
LEU 6210.0072
SER 6220.0112
LEU 6230.0069
ASN 6240.0129
ILE 6250.0131
THR 6260.0203
CYS 6270.0353
GLU 10.0052
ALA 20.0056
ALA 30.0064
ALA 40.0058
LYS 50.0051
MET 60.0046
GLN 70.0052
ARG 80.0047
LEU 90.0041
VAL 100.0048
LEU 110.0035
LEU 120.0036
LEU 130.0038
ALA 140.0037
ILE 150.0035
SER 160.0029
LEU 170.0035
LEU 180.0022
LEU 190.0023
TYR 200.0028
GLN 210.0008
ASP 220.0039
LEU 230.0049
PRO 240.0037
VAL 250.0048
ARG 260.0122
SER 270.0097
GLU 280.0136
PHE 290.0129
GLU 300.0086
LEU 310.0083
ASP 320.0078
ARG 330.0066
ILE 340.0065
CYS 350.0065
GLY 360.0040
TYR 370.0030
GLY 380.0029
THR 390.0051
ALA 400.0055
ARG 410.0033
CYS 420.0030
ARG 430.0042
LYS 440.0073
LYS 450.0089
CYS 460.0061
ARG 470.0062
SER 480.0070
GLN 490.0061
GLU 500.0054
TYR 510.0085
ARG 520.0098
ILE 530.0095
GLY 540.0123
ARG 550.0131
CYS 560.0100
PRO 570.0117
ASN 580.0080
THR 590.0114
TYR 600.0086
ALA 610.0067
CYS 620.0054
CYS 630.0046
LEU 640.0039
ARG 650.0044
LYS 660.0078
TRP 670.0100
ASP 680.0079
GLU 690.0082
SER 700.0074
LEU 710.0095
LEU 720.0106
ASN 730.0079
ARG 740.0086
THR 750.0116
LYS 760.0110
PRO 770.0122
GLU 780.0096
ALA 790.0117
ALA 800.0150
ALA 810.0107
LYS 820.0096
LYS 830.0063
GLU 840.0060
MET 850.0059
ASN 860.0065
LEU 870.0052
SER 880.0048
VAL 890.0044
GLY 900.0046
LEU 910.0088
GLY 920.0228
GLY 930.0316
GLY 940.0268
SER 950.0134
ASN 960.0053
LEU 970.0055
SER 980.0059
VAL 990.0055
GLY 1000.0072
LEU 1010.0084
GLY 1020.0097
GLU 1030.0119
ILE 1040.0148
GLY 1050.0174
GLY 1060.0159
GLY 1070.0116
SER 1080.0139
LYS 1090.0100
LEU 1100.0129
LEU 1110.0065
ASP 1120.0134
ILE 1130.0116
ASN 1140.0205
LEU 1150.0188
GLY 1160.0225
ARG 1170.0110
GLY 1180.0186
GLY 1190.0235
GLY 1200.0212
SER 1210.0062
MET 1220.0045
VAL 1230.0038
ASP 1240.0025
LEU 1250.0017
THR 1260.0035
PHE 1270.0039
GLY 1280.0043
GLY 1290.0048
VAL 1300.0062
GLY 1310.0101
GLY 1320.0083
GLY 1330.0083
SER 1340.0093
THR 1350.0129
PHE 1360.0087
THR 1370.0090
PHE 1380.0090
PHE 1390.0089
PRO 1400.0093
LEU 1410.0126
VAL 1420.0108
ILE 1430.0185
GLY 1440.0260
GLY 1450.0421
GLY 1460.0333
SER 1470.0240
ASP 1480.0229
ALA 1490.0136
MET 1500.0154
TYR 1510.0079
LEU 1520.0084
GLY 1530.0076
PHE 1540.0085
ALA 1550.0083
ALA 1560.0109
GLY 1570.0201
GLY 1580.0234
GLY 1590.0217
SER 1600.0149
ALA 1610.0131
GLY 1620.0130
GLY 1630.0114
GLU 1640.0090
ASN 1650.0059
HIS 1660.0032
VAL 1670.0027
ALA 1680.0030
PHE 1690.0032
GLY 1700.0039
PRO 1710.0168
GLY 1720.0192
PRO 1730.0183
GLY 1740.0099
VAL 1750.0011
ASP 1760.0040
LEU 1770.0016
THR 1780.0033
PHE 1790.0069
GLY 1800.0087
GLY 1810.0207
VAL 1820.0220
GLN 1830.0166
PHE 1840.0139
ALA 1850.0114
MET 1860.0025
VAL 1870.0052
ASN 1880.0047
ASN 1890.0104
GLY 1900.0110
PRO 1910.0111
GLY 1920.0140
PRO 1930.0098
GLY 1940.0054
GLU 1950.0092
SER 1960.0173
PHE 1970.0126
THR 1980.0073
ALA 1990.0071
GLN 2000.0068
PRO 2010.0120
ALA 2020.0059
ASP 2030.0083
MET 2040.0128
GLN 2050.0042
ALA 2060.0159
GLY 2070.0125
ILE 2080.0108
LYS 2090.0059
GLY 2100.0053
PRO 2110.0129
GLY 2120.0216
PRO 2130.0080
GLY 2140.0223
GLY 2150.0327
SER 2160.0100
ILE 2170.0230
GLN 2180.0090
VAL 2190.0219
ILE 2200.0118
ASN 2210.0631
GLY 2220.0495
SER 2230.0324
THR 2240.0166
ILE 2250.0116
GLY 2260.0129
THR 2270.0290
GLY 2280.0270
SER 2290.0369
LYS 2300.0292
LYS 2310.0427
THR 2320.0531
ILE 2330.0460
LEU 2340.0426
ILE 2350.0581
TYR 2360.0403
SER 2370.0564
ILE 2380.0496
ILE 2390.0497
GLY 2400.0462
VAL 2410.0108
LYS 2420.0096
LYS 2430.0078
GLY 2440.0124
THR 2450.0133
LEU 2460.0149
ALA 2470.0279
TRP 2480.0304
ALA 2490.0493
ARG 2500.0515
THR 2510.0536
GLY 2520.0320
PHE 2530.0206
SER 2540.0114
PRO 2550.0234
ALA 2560.0457
LYS 2570.0299
LYS 2580.0229
LEU 2590.0249
ASN 2600.0276
ALA 2610.0406
GLY 2620.0415
VAL 2630.0368
VAL 2640.0441
ARG 2650.0374
VAL 2660.0343
PHE 2670.0330
PHE 2680.0255
LEU 2690.0265
ASN 2700.0286
GLN 2710.0208
LYS 2720.0150
LYS 2730.0129
ALA 2740.0157
LYS 2750.0130
ASP 2760.0102
VAL 2770.0130
LEU 2780.0118
ARG 2790.0092
LYS 2800.0108
THR 2810.0174
SER 2820.0099
ARG 2830.0083
PRO 2840.0080
MET 2850.0081
VAL 2860.0070
ASP 2870.0051
LEU 2880.0044
THR 2890.0025
PHE 2900.0018
GLY 2910.0018
GLY 2920.0017

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.