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***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 86  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1023
GLU 270.0029
PRO 280.0044
CYS 290.0032
VAL 300.0043
GLU 310.0038
VAL 320.0060
VAL 330.0063
PRO 340.0050
ASN 350.0049
ILE 360.0055
THR 370.0041
TYR 380.0026
GLN 390.0036
CYS 400.0030
MET 410.0049
GLU 420.0059
LEU 430.0056
ASN 440.0058
PHE 450.0044
TYR 460.0049
LYS 470.0037
ILE 480.0018
PRO 490.0021
ASP 500.0035
ASN 510.0033
LEU 520.0020
PRO 530.0035
PHE 540.0045
SER 550.0049
THR 560.0034
LYS 570.0035
ASN 580.0029
LEU 590.0017
ASP 600.0022
LEU 610.0019
SER 620.0028
PHE 630.0033
ASN 640.0030
PRO 650.0029
LEU 660.0023
ARG 670.0013
HIS 680.0012
LEU 690.0012
GLY 700.0011
SER 710.0011
TYR 720.0008
SER 730.0012
PHE 740.0009
PHE 750.0016
SER 760.0026
PHE 770.0022
PRO 780.0027
GLU 790.0029
LEU 800.0022
GLN 810.0025
VAL 820.0010
LEU 830.0006
ASP 840.0007
LEU 850.0008
SER 860.0013
ARG 870.0015
CYS 880.0013
GLU 890.0011
ILE 900.0014
GLN 910.0018
THR 920.0021
ILE 930.0021
GLU 940.0021
ASP 950.0022
GLY 960.0021
ALA 970.0014
TYR 980.0011
GLN 990.0012
SER 1000.0010
LEU 1010.0013
SER 1020.0010
HIS 1030.0012
LEU 1040.0010
SER 1050.0014
THR 1060.0012
LEU 1070.0003
ILE 1080.0002
LEU 1090.0006
THR 1100.0008
GLY 1110.0013
ASN 1120.0015
PRO 1130.0023
ILE 1140.0023
GLN 1150.0032
SER 1160.0034
LEU 1170.0034
ALA 1180.0037
LEU 1190.0038
GLY 1200.0035
ALA 1210.0028
PHE 1220.0024
SER 1230.0029
GLY 1240.0025
LEU 1250.0021
SER 1260.0026
SER 1270.0022
LEU 1280.0013
GLN 1290.0017
LYS 1300.0011
LEU 1310.0005
VAL 1320.0003
ALA 1330.0007
VAL 1340.0012
GLU 1350.0019
THR 1360.0019
ASN 1370.0032
LEU 1380.0029
ALA 1390.0034
SER 1400.0032
LEU 1410.0029
GLU 1420.0040
ASN 1430.0043
PHE 1440.0036
PRO 1450.0040
ILE 1460.0034
GLY 1470.0043
HIS 1480.0047
LEU 1490.0034
LYS 1500.0041
THR 1510.0035
LEU 1520.0017
LYS 1530.0018
GLU 1540.0011
LEU 1550.0001
ASN 1560.0010
VAL 1570.0009
ALA 1580.0011
HIS 1590.0019
ASN 1600.0021
LEU 1610.0026
ILE 1620.0017
GLN 1630.0016
SER 1640.0013
PHE 1650.0009
LYS 1660.0012
LEU 1670.0021
PRO 1680.0032
GLU 1690.0038
TYR 1700.0043
PHE 1710.0034
SER 1720.0044
ASN 1730.0045
LEU 1740.0034
THR 1750.0040
ASN 1760.0033
LEU 1770.0015
GLU 1780.0013
HIS 1790.0007
LEU 1800.0006
ASP 1810.0004
LEU 1820.0010
SER 1830.0011
SER 1840.0017
ASN 1850.0017
LYS 1860.0018
ILE 1870.0029
GLN 1880.0035
SER 1890.0030
ILE 1900.0022
TYR 1910.0028
CYS 1920.0024
THR 1930.0015
ASP 1940.0007
LEU 1950.0013
ARG 1960.0018
VAL 1970.0018
LEU 1980.0021
HIS 1990.0025
GLN 2000.0029
MET 2010.0037
PRO 2020.0029
LEU 2030.0029
LEU 2040.0023
ASN 2050.0017
LEU 2060.0011
SER 2070.0017
LEU 2080.0012
ASP 2090.0016
LEU 2100.0015
SER 2110.0021
LEU 2120.0039
ASN 2130.0035
PRO 2140.0043
MET 2150.0035
ASN 2160.0046
PHE 2170.0045
ILE 2180.0034
GLN 2190.0044
PRO 2200.0049
GLY 2210.0049
ALA 2220.0034
PHE 2230.0030
LYS 2240.0048
GLU 2250.0056
ILE 2260.0042
ARG 2270.0033
LEU 2280.0026
HIS 2290.0033
LYS 2300.0026
LEU 2310.0016
THR 2320.0025
LEU 2330.0019
ARG 2340.0034
ASN 2350.0044
ASN 2360.0040
PHE 2370.0046
ASP 2380.0063
SER 2390.0057
LEU 2400.0042
ASN 2410.0052
VAL 2420.0050
MET 2430.0032
LYS 2440.0033
THR 2450.0044
CYS 2460.0031
ILE 2470.0019
GLN 2480.0034
GLY 2490.0033
LEU 2500.0022
ALA 2510.0037
GLY 2520.0038
LEU 2530.0029
GLU 2540.0036
VAL 2550.0031
HIS 2560.0042
ARG 2570.0040
LEU 2580.0028
VAL 2590.0030
LEU 2600.0024
GLY 2610.0031
GLU 2620.0047
PHE 2630.0070
ARG 2640.0082
ASN 2650.0098
GLU 2660.0087
GLY 2670.0080
ASN 2680.0063
LEU 2690.0049
GLU 2700.0053
LYS 2710.0036
PHE 2720.0017
ASP 2730.0008
LYS 2740.0012
SER 2750.0014
ALA 2760.0008
LEU 2770.0008
GLU 2780.0014
GLY 2790.0014
LEU 2800.0018
CYS 2810.0029
ASN 2820.0029
LEU 2830.0026
THR 2840.0036
ILE 2850.0035
GLU 2860.0048
GLU 2870.0043
PHE 2880.0039
ARG 2890.0040
LEU 2900.0038
ALA 2910.0041
TYR 2920.0047
LEU 2930.0035
ASP 2940.0040
TYR 2950.0026
TYR 2960.0030
LEU 2970.0039
ASP 2980.0042
GLY 2990.0042
ILE 3000.0039
ILE 3010.0041
ASP 3020.0036
LEU 3030.0033
PHE 3040.0036
ASN 3050.0036
CYS 3060.0033
LEU 3070.0038
THR 3080.0037
ASN 3090.0038
VAL 3100.0039
SER 3110.0040
SER 3120.0040
PHE 3130.0041
SER 3140.0041
LEU 3150.0042
VAL 3160.0042
SER 3170.0048
VAL 3180.0045
THR 3190.0044
ILE 3200.0045
GLU 3210.0047
ARG 3220.0042
VAL 3230.0037
LYS 3240.0037
ASP 3250.0037
PHE 3260.0032
SER 3270.0029
TYR 3280.0033
ASN 3290.0030
PHE 3300.0032
GLY 3310.0031
TRP 3320.0032
GLN 3330.0025
HIS 3340.0023
LEU 3350.0027
GLU 3360.0027
LEU 3370.0033
VAL 3380.0033
ASN 3390.0034
CYS 3400.0035
LYS 3410.0037
PHE 3420.0035
GLY 3430.0039
GLN 3440.0030
PHE 3450.0022
PRO 3460.0020
THR 3470.0017
LEU 3480.0015
LYS 3490.0014
LEU 3500.0016
LYS 3510.0019
SER 3520.0017
LEU 3530.0009
LYS 3540.0006
ARG 3550.0005
LEU 3560.0010
THR 3570.0015
PHE 3580.0019
THR 3590.0024
SER 3600.0030
ASN 3610.0029
LYS 3620.0036
GLY 3630.0035
GLY 3640.0029
ASN 3650.0026
ALA 3660.0031
PHE 3670.0033
SER 3680.0031
GLU 3690.0031
VAL 3700.0029
ASP 3710.0030
LEU 3720.0026
PRO 3730.0032
SER 3740.0028
LEU 3750.0025
GLU 3760.0026
PHE 3770.0022
LEU 3780.0023
ASP 3790.0024
LEU 3800.0025
SER 3810.0028
ARG 3820.0032
ASN 3830.0029
GLY 3840.0035
LEU 3850.0035
SER 3860.0044
PHE 3870.0053
LYS 3880.0063
GLY 3890.0065
CYS 3900.0054
CYS 3910.0050
SER 3920.0052
GLN 3930.0051
SER 3940.0054
ASP 3950.0048
PHE 3960.0042
GLY 3970.0042
THR 3980.0039
ILE 3990.0041
SER 4000.0036
LEU 4010.0034
LYS 4020.0032
TYR 4030.0031
LEU 4040.0033
ASP 4050.0032
LEU 4060.0035
SER 4070.0034
PHE 4080.0035
ASN 4090.0037
GLY 4100.0043
VAL 4110.0048
ILE 4120.0054
THR 4130.0059
MET 4140.0054
SER 4150.0060
SER 4160.0055
ASN 4170.0050
PHE 4180.0047
LEU 4190.0052
GLY 4200.0051
LEU 4210.0045
GLU 4220.0041
GLN 4230.0040
LEU 4240.0036
GLU 4250.0031
HIS 4260.0029
LEU 4270.0030
ASP 4280.0030
PHE 4290.0032
GLN 4300.0032
HIS 4310.0034
SER 4320.0041
ASN 4330.0049
LEU 4340.0045
LYS 4350.0052
GLN 4360.0051
MET 4370.0041
SER 4380.0041
GLU 4390.0045
PHE 4400.0038
SER 4410.0032
VAL 4420.0041
PHE 4430.0035
LEU 4440.0035
SER 4450.0039
LEU 4460.0034
ARG 4470.0032
ASN 4480.0033
LEU 4490.0028
ILE 4500.0024
TYR 4510.0023
LEU 4520.0026
ASP 4530.0027
ILE 4540.0028
SER 4550.0029
HIS 4560.0031
THR 4570.0041
HIS 4580.0045
THR 4590.0034
ARG 4600.0033
VAL 4610.0023
ALA 4620.0025
PHE 4630.0019
ASN 4640.0018
GLY 4650.0021
ILE 4660.0023
PHE 4670.0022
ASN 4680.0023
GLY 4690.0027
LEU 4700.0025
SER 4710.0028
SER 4720.0026
LEU 4730.0022
GLU 4740.0019
VAL 4750.0020
LEU 4760.0021
LYS 4770.0020
MET 4780.0020
ALA 4790.0022
GLY 4800.0024
ASN 4810.0023
SER 4820.0025
PHE 4830.0023
GLN 4840.0025
GLU 4850.0031
ASN 4860.0032
PHE 4870.0033
LEU 4880.0029
PRO 4890.0031
ASP 4900.0031
ILE 4910.0028
PHE 4920.0025
THR 4930.0031
GLU 4940.0030
LEU 4950.0025
ARG 4960.0027
ASN 4970.0024
LEU 4980.0022
THR 4990.0023
PHE 5000.0025
LEU 5010.0024
ASP 5020.0021
LEU 5030.0021
SER 5040.0022
GLN 5050.0021
CYS 5060.0021
GLN 5070.0025
LEU 5080.0026
GLU 5090.0031
GLN 5100.0032
LEU 5110.0030
SER 5120.0035
PRO 5130.0035
THR 5140.0034
ALA 5150.0033
PHE 5160.0031
ASN 5170.0030
SER 5180.0028
LEU 5190.0027
SER 5200.0028
SER 5210.0027
LEU 5220.0032
GLN 5230.0034
VAL 5240.0033
LEU 5250.0031
ASN 5260.0031
MET 5270.0029
SER 5280.0028
HIS 5290.0030
ASN 5300.0029
ASN 5310.0027
PHE 5320.0029
PHE 5330.0029
SER 5340.0025
LEU 5350.0024
ASP 5360.0024
THR 5370.0026
PHE 5380.0029
PRO 5390.0033
TYR 5400.0034
LYS 5410.0036
CYS 5420.0034
LEU 5430.0034
ASN 5440.0037
SER 5450.0038
LEU 5460.0036
GLN 5470.0038
VAL 5480.0034
LEU 5490.0032
ASP 5500.0032
TYR 5510.0030
SER 5520.0032
LEU 5530.0037
ASN 5540.0035
HIS 5550.0035
ILE 5560.0029
MET 5570.0030
THR 5580.0026
SER 5590.0022
LYS 5600.0021
LYS 5610.0022
GLN 5620.0026
GLU 5630.0029
LEU 5640.0023
GLN 5650.0029
HIS 5660.0032
PHE 5670.0030
PRO 5680.0036
SER 5690.0039
SER 5700.0040
LEU 5710.0032
ALA 5720.0024
PHE 5730.0023
LEU 5740.0023
ASN 5750.0028
LEU 5760.0028
THR 5770.0040
GLN 5780.0048
ASN 5790.0041
ASP 5800.0044
PHE 5810.0038
ALA 5820.0032
CYS 5830.0033
THR 5840.0024
CYS 5850.0037
GLU 5860.0033
HIS 5870.0022
GLN 5880.0034
SER 5890.0030
PHE 5900.0022
LEU 5910.0035
GLN 5920.0044
TRP 5930.0032
ILE 5940.0036
LYS 5950.0049
ASP 5960.0043
GLN 5970.0031
ARG 5980.0038
GLN 5990.0031
LEU 6000.0021
LEU 6010.0031
VAL 6020.0034
GLU 6030.0044
VAL 6040.0050
GLU 6050.0059
ARG 6060.0057
MET 6070.0059
GLU 6080.0062
CYS 6090.0051
ALA 6100.0052
THR 6110.0040
PRO 6120.0020
SER 6130.0030
ASP 6140.0029
LYS 6150.0032
GLN 6160.0040
GLY 6170.0079
MET 6180.0076
PRO 6190.0073
VAL 6200.0057
LEU 6210.0064
SER 6220.0089
LEU 6230.0067
ASN 6240.0068
ILE 6250.0062
THR 6260.0071
CYS 6270.0170
GLU 10.0077
ALA 20.0047
ALA 30.0036
ALA 40.0049
LYS 50.0013
MET 60.0036
GLN 70.0043
ARG 80.0049
LEU 90.0049
VAL 100.0054
LEU 110.0033
LEU 120.0041
LEU 130.0035
ALA 140.0008
ILE 150.0009
SER 160.0031
LEU 170.0057
LEU 180.0047
LEU 190.0018
TYR 200.0056
GLN 210.0069
ASP 220.0051
LEU 230.0033
PRO 240.0045
VAL 250.0058
ARG 260.0081
SER 270.0050
GLU 280.0059
PHE 290.0050
GLU 300.0026
LEU 310.0030
ASP 320.0031
ARG 330.0025
ILE 340.0030
CYS 350.0043
GLY 360.0030
TYR 370.0030
GLY 380.0031
THR 390.0034
ALA 400.0028
ARG 410.0033
CYS 420.0064
ARG 430.0087
LYS 440.0124
LYS 450.0124
CYS 460.0075
ARG 470.0072
SER 480.0082
GLN 490.0071
GLU 500.0066
TYR 510.0080
ARG 520.0068
ILE 530.0036
GLY 540.0051
ARG 550.0082
CYS 560.0096
PRO 570.0129
ASN 580.0144
THR 590.0139
TYR 600.0122
ALA 610.0075
CYS 620.0051
CYS 630.0051
LEU 640.0039
ARG 650.0050
LYS 660.0058
TRP 670.0056
ASP 680.0043
GLU 690.0043
SER 700.0034
LEU 710.0029
LEU 720.0042
ASN 730.0035
ARG 740.0034
THR 750.0048
LYS 760.0041
PRO 770.0052
GLU 780.0048
ALA 790.0074
ALA 800.0081
ALA 810.0191
LYS 820.0168
LYS 830.0155
GLU 840.0141
MET 850.0152
ASN 860.0145
LEU 870.0136
SER 880.0136
VAL 890.0144
GLY 900.0139
LEU 910.0150
GLY 920.0214
GLY 930.0267
GLY 940.0276
SER 950.0185
ASN 960.0160
LEU 970.0160
SER 980.0161
VAL 990.0161
GLY 1000.0172
LEU 1010.0183
GLY 1020.0193
GLU 1030.0213
ILE 1040.0190
GLY 1050.0220
GLY 1060.0204
GLY 1070.0204
SER 1080.0217
LYS 1090.0240
LEU 1100.0251
LEU 1110.0101
ASP 1120.0128
ILE 1130.0103
ASN 1140.0155
LEU 1150.0139
GLY 1160.0242
ARG 1170.0336
GLY 1180.0262
GLY 1190.0190
GLY 1200.0080
SER 1210.0088
MET 1220.0077
VAL 1230.0080
ASP 1240.0093
LEU 1250.0117
THR 1260.0093
PHE 1270.0035
GLY 1280.0064
GLY 1290.0107
VAL 1300.0145
GLY 1310.0389
GLY 1320.0302
GLY 1330.0157
SER 1340.0165
THR 1350.0166
PHE 1360.0158
THR 1370.0177
PHE 1380.0177
PHE 1390.0210
PRO 1400.0219
LEU 1410.0289
VAL 1420.0304
ILE 1430.0245
GLY 1440.0214
GLY 1450.0326
GLY 1460.0272
SER 1470.0169
ASP 1480.0174
ALA 1490.0173
MET 1500.0218
TYR 1510.0213
LEU 1520.0188
GLY 1530.0187
PHE 1540.0180
ALA 1550.0186
ALA 1560.0249
GLY 1570.0341
GLY 1580.0338
GLY 1590.0235
SER 1600.0104
ALA 1610.0228
GLY 1620.0227
GLY 1630.0197
GLU 1640.0148
ASN 1650.0154
HIS 1660.0129
VAL 1670.0126
ALA 1680.0129
PHE 1690.0140
GLY 1700.0154
PRO 1710.0500
GLY 1720.0543
PRO 1730.0516
GLY 1740.0240
VAL 1750.0139
ASP 1760.0182
LEU 1770.0121
THR 1780.0110
PHE 1790.0083
GLY 1800.0087
GLY 1810.0148
VAL 1820.0161
GLN 1830.0180
PHE 1840.0150
ALA 1850.0201
MET 1860.0216
VAL 1870.0162
ASN 1880.0123
ASN 1890.0175
GLY 1900.0163
PRO 1910.0471
GLY 1920.0199
PRO 1930.0195
GLY 1940.0302
GLU 1950.0045
SER 1960.0066
PHE 1970.0103
THR 1980.0127
ALA 1990.0020
GLN 2000.0119
PRO 2010.0075
ALA 2020.0129
ASP 2030.0167
MET 2040.0179
GLN 2050.0262
ALA 2060.0421
GLY 2070.0190
ILE 2080.0373
LYS 2090.0268
GLY 2100.0593
PRO 2110.0298
GLY 2120.0051
PRO 2130.0197
GLY 2140.0124
GLY 2150.0232
SER 2160.0198
ILE 2170.0047
GLN 2180.0319
VAL 2190.0284
ILE 2200.0353
ASN 2210.1023
GLY 2220.0796
SER 2230.0530
THR 2240.0418
ILE 2250.0458
GLY 2260.0276
THR 2270.0338
GLY 2280.0367
SER 2290.0336
LYS 2300.0103
LYS 2310.0090
THR 2320.0120
ILE 2330.0150
LEU 2340.0164
ILE 2350.0256
TYR 2360.0231
SER 2370.0233
ILE 2380.0173
ILE 2390.0128
GLY 2400.0092
VAL 2410.0093
LYS 2420.0069
LYS 2430.0066
GLY 2440.0062
THR 2450.0059
LEU 2460.0155
ALA 2470.0125
TRP 2480.0108
ALA 2490.0143
ARG 2500.0149
THR 2510.0247
GLY 2520.0231
PHE 2530.0192
SER 2540.0153
PRO 2550.0323
ALA 2560.0410
LYS 2570.0296
LYS 2580.0297
LEU 2590.0338
ASN 2600.0321
ALA 2610.0477
GLY 2620.0397
VAL 2630.0299
VAL 2640.0677
ARG 2650.0306
VAL 2660.0251
PHE 2670.0182
PHE 2680.0093
LEU 2690.0095
ASN 2700.0122
GLN 2710.0071
LYS 2720.0060
LYS 2730.0090
ALA 2740.0080
LYS 2750.0057
ASP 2760.0070
VAL 2770.0066
LEU 2780.0055
ARG 2790.0040
LYS 2800.0046
THR 2810.0031
SER 2820.0030
ARG 2830.0031
PRO 2840.0064
MET 2850.0071
VAL 2860.0091
ASP 2870.0101
LEU 2880.0098
THR 2890.0104
PHE 2900.0065
GLY 2910.0109
GLY 2920.0100

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.