CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  TLR_4_simulation  ***

<R2> analysis for 2608260326273940916

---  normal mode 87  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0437
GLU 270.0225
PRO 280.0270
CYS 290.0211
VAL 300.0254
GLU 310.0220
VAL 320.0276
VAL 330.0238
PRO 340.0156
ASN 350.0096
ILE 360.0170
THR 370.0165
TYR 380.0134
GLN 390.0169
CYS 400.0134
MET 410.0175
GLU 420.0194
LEU 430.0182
ASN 440.0168
PHE 450.0124
TYR 460.0114
LYS 470.0100
ILE 480.0070
PRO 490.0103
ASP 500.0139
ASN 510.0166
LEU 520.0094
PRO 530.0100
PHE 540.0149
SER 550.0152
THR 560.0112
LYS 570.0145
ASN 580.0137
LEU 590.0102
ASP 600.0112
LEU 610.0086
SER 620.0108
PHE 630.0115
ASN 640.0094
PRO 650.0084
LEU 660.0063
ARG 670.0087
HIS 680.0094
LEU 690.0088
GLY 700.0101
SER 710.0099
TYR 720.0085
SER 730.0100
PHE 740.0086
PHE 750.0102
SER 760.0134
PHE 770.0116
PRO 780.0139
GLU 790.0144
LEU 800.0113
GLN 810.0123
VAL 820.0083
LEU 830.0077
ASP 840.0077
LEU 850.0076
SER 860.0081
ARG 870.0074
CYS 880.0079
GLU 890.0090
ILE 900.0087
GLN 910.0098
THR 920.0103
ILE 930.0087
GLU 940.0102
ASP 950.0098
GLY 960.0080
ALA 970.0078
TYR 980.0064
GLN 990.0064
SER 1000.0073
LEU 1010.0069
SER 1020.0054
HIS 1030.0066
LEU 1040.0054
SER 1050.0069
THR 1060.0063
LEU 1070.0034
ILE 1080.0031
LEU 1090.0042
THR 1100.0034
GLY 1110.0042
ASN 1120.0064
PRO 1130.0076
ILE 1140.0083
GLN 1150.0102
SER 1160.0113
LEU 1170.0090
ALA 1180.0110
LEU 1190.0114
GLY 1200.0104
ALA 1210.0081
PHE 1220.0067
SER 1230.0080
GLY 1240.0072
LEU 1250.0060
SER 1260.0067
SER 1270.0082
LEU 1280.0077
GLN 1290.0100
LYS 1300.0086
LEU 1310.0069
VAL 1320.0052
ALA 1330.0046
VAL 1340.0036
GLU 1350.0026
THR 1360.0038
ASN 1370.0039
LEU 1380.0053
ALA 1390.0054
SER 1400.0068
LEU 1410.0081
GLU 1420.0085
ASN 1430.0097
PHE 1440.0094
PRO 1450.0112
ILE 1460.0110
GLY 1470.0136
HIS 1480.0153
LEU 1490.0137
LYS 1500.0156
THR 1510.0151
LEU 1520.0129
LYS 1530.0135
GLU 1540.0117
LEU 1550.0099
ASN 1560.0082
VAL 1570.0066
ALA 1580.0063
HIS 1590.0065
ASN 1600.0069
LEU 1610.0075
ILE 1620.0106
GLN 1630.0109
SER 1640.0107
PHE 1650.0092
LYS 1660.0104
LEU 1670.0086
PRO 1680.0103
GLU 1690.0109
TYR 1700.0124
PHE 1710.0106
SER 1720.0133
ASN 1730.0149
LEU 1740.0137
THR 1750.0152
ASN 1760.0152
LEU 1770.0121
GLU 1780.0119
HIS 1790.0107
LEU 1800.0095
ASP 1810.0087
LEU 1820.0079
SER 1830.0076
SER 1840.0082
ASN 1850.0092
LYS 1860.0102
ILE 1870.0117
GLN 1880.0127
SER 1890.0138
ILE 1900.0135
TYR 1910.0165
CYS 1920.0164
THR 1930.0161
ASP 1940.0134
LEU 1950.0106
ARG 1960.0112
VAL 1970.0084
LEU 1980.0071
HIS 1990.0085
GLN 2000.0068
MET 2010.0075
PRO 2020.0077
LEU 2030.0076
LEU 2040.0071
ASN 2050.0073
LEU 2060.0070
SER 2070.0068
LEU 2080.0064
ASP 2090.0065
LEU 2100.0060
SER 2110.0060
LEU 2120.0067
ASN 2130.0079
PRO 2140.0086
MET 2150.0091
ASN 2160.0106
PHE 2170.0134
ILE 2180.0134
GLN 2190.0172
PRO 2200.0186
GLY 2210.0193
ALA 2220.0163
PHE 2230.0136
LYS 2240.0171
GLU 2250.0162
ILE 2260.0119
ARG 2270.0092
LEU 2280.0069
HIS 2290.0057
LYS 2300.0047
LEU 2310.0047
THR 2320.0053
LEU 2330.0053
ARG 2340.0056
ASN 2350.0058
ASN 2360.0055
PHE 2370.0066
ASP 2380.0081
SER 2390.0074
LEU 2400.0072
ASN 2410.0065
VAL 2420.0058
MET 2430.0060
LYS 2440.0077
THR 2450.0085
CYS 2460.0093
ILE 2470.0082
GLN 2480.0109
GLY 2490.0115
LEU 2500.0112
ALA 2510.0141
GLY 2520.0142
LEU 2530.0112
GLU 2540.0112
VAL 2550.0080
HIS 2560.0082
ARG 2570.0068
LEU 2580.0064
VAL 2590.0058
LEU 2600.0055
GLY 2610.0052
GLU 2620.0057
PHE 2630.0090
ARG 2640.0121
ASN 2650.0150
GLU 2660.0130
GLY 2670.0132
ASN 2680.0109
LEU 2690.0101
GLU 2700.0127
LYS 2710.0120
PHE 2720.0093
ASP 2730.0103
LYS 2740.0109
SER 2750.0096
ALA 2760.0086
LEU 2770.0076
GLU 2780.0082
GLY 2790.0077
LEU 2800.0091
CYS 2810.0110
ASN 2820.0126
LEU 2830.0104
THR 2840.0110
ILE 2850.0092
GLU 2860.0101
GLU 2870.0078
PHE 2880.0073
ARG 2890.0073
LEU 2900.0068
ALA 2910.0072
TYR 2920.0065
LEU 2930.0071
ASP 2940.0083
TYR 2950.0091
TYR 2960.0089
LEU 2970.0086
ASP 2980.0094
GLY 2990.0096
ILE 3000.0093
ILE 3010.0102
ASP 3020.0095
LEU 3030.0087
PHE 3040.0088
ASN 3050.0092
CYS 3060.0086
LEU 3070.0072
THR 3080.0061
ASN 3090.0062
VAL 3100.0067
SER 3110.0063
SER 3120.0075
PHE 3130.0071
SER 3140.0081
LEU 3150.0080
VAL 3160.0094
SER 3170.0098
VAL 3180.0088
THR 3190.0086
ILE 3200.0085
GLU 3210.0089
ARG 3220.0082
VAL 3230.0089
LYS 3240.0102
ASP 3250.0090
PHE 3260.0091
SER 3270.0076
TYR 3280.0060
ASN 3290.0057
PHE 3300.0052
GLY 3310.0056
TRP 3320.0050
GLN 3330.0054
HIS 3340.0063
LEU 3350.0063
GLU 3360.0078
LEU 3370.0104
VAL 3380.0128
ASN 3390.0148
CYS 3400.0134
LYS 3410.0141
PHE 3420.0136
GLY 3430.0146
GLN 3440.0142
PHE 3450.0128
PRO 3460.0106
THR 3470.0105
LEU 3480.0079
LYS 3490.0069
LEU 3500.0051
LYS 3510.0055
SER 3520.0039
LEU 3530.0036
LYS 3540.0042
ARG 3550.0050
LEU 3560.0052
THR 3570.0087
PHE 3580.0101
THR 3590.0131
SER 3600.0163
ASN 3610.0156
LYS 3620.0195
GLY 3630.0192
GLY 3640.0183
ASN 3650.0165
ALA 3660.0169
PHE 3670.0136
SER 3680.0136
GLU 3690.0120
VAL 3700.0101
ASP 3710.0095
LEU 3720.0058
PRO 3730.0064
SER 3740.0054
LEU 3750.0043
GLU 3760.0041
PHE 3770.0049
LEU 3780.0043
ASP 3790.0067
LEU 3800.0078
SER 3810.0100
ARG 3820.0143
ASN 3830.0141
GLY 3840.0156
LEU 3850.0131
SER 3860.0142
PHE 3870.0122
LYS 3880.0139
GLY 3890.0133
CYS 3900.0104
CYS 3910.0095
SER 3920.0100
GLN 3930.0103
SER 3940.0118
ASP 3950.0106
PHE 3960.0089
GLY 3970.0086
THR 3980.0074
ILE 3990.0082
SER 4000.0073
LEU 4010.0057
LYS 4020.0065
TYR 4030.0056
LEU 4040.0048
ASP 4050.0056
LEU 4060.0062
SER 4070.0081
PHE 4080.0103
ASN 4090.0101
GLY 4100.0114
VAL 4110.0111
ILE 4120.0105
THR 4130.0109
MET 4140.0097
SER 4150.0108
SER 4160.0104
ASN 4170.0082
PHE 4180.0082
LEU 4190.0094
GLY 4200.0099
LEU 4210.0085
GLU 4220.0082
GLN 4230.0082
LEU 4240.0067
GLU 4250.0061
HIS 4260.0049
LEU 4270.0060
ASP 4280.0067
PHE 4290.0069
GLN 4300.0080
HIS 4310.0086
SER 4320.0088
ASN 4330.0095
LEU 4340.0093
LYS 4350.0101
GLN 4360.0103
MET 4370.0100
SER 4380.0104
GLU 4390.0097
PHE 4400.0072
SER 4410.0057
VAL 4420.0072
PHE 4430.0061
LEU 4440.0056
SER 4450.0059
LEU 4460.0056
ARG 4470.0036
ASN 4480.0046
LEU 4490.0045
ILE 4500.0040
TYR 4510.0043
LEU 4520.0058
ASP 4530.0071
ILE 4540.0080
SER 4550.0090
HIS 4560.0104
THR 4570.0119
HIS 4580.0134
THR 4590.0115
ARG 4600.0126
VAL 4610.0112
ALA 4620.0169
PHE 4630.0142
ASN 4640.0131
GLY 4650.0099
ILE 4660.0083
PHE 4670.0064
ASN 4680.0070
GLY 4690.0046
LEU 4700.0021
SER 4710.0043
SER 4720.0046
LEU 4730.0024
GLU 4740.0053
VAL 4750.0050
LEU 4760.0030
LYS 4770.0069
MET 4780.0083
ALA 4790.0103
GLY 4800.0130
ASN 4810.0127
SER 4820.0174
PHE 4830.0167
GLN 4840.0218
GLU 4850.0243
ASN 4860.0191
PHE 4870.0172
LEU 4880.0126
PRO 4890.0146
ASP 4900.0137
ILE 4910.0101
PHE 4920.0088
THR 4930.0134
GLU 4940.0124
LEU 4950.0086
ARG 4960.0128
ASN 4970.0119
LEU 4980.0083
THR 4990.0110
PHE 5000.0085
LEU 5010.0039
ASP 5020.0062
LEU 5030.0061
SER 5040.0092
GLN 5050.0123
CYS 5060.0110
GLN 5070.0142
LEU 5080.0101
GLU 5090.0113
GLN 5100.0106
LEU 5110.0088
SER 5120.0142
PRO 5130.0136
THR 5140.0152
ALA 5150.0116
PHE 5160.0098
ASN 5170.0148
SER 5180.0163
LEU 5190.0130
SER 5200.0172
SER 5210.0169
LEU 5220.0127
GLN 5230.0147
VAL 5240.0119
LEU 5250.0074
ASN 5260.0077
MET 5270.0061
SER 5280.0092
HIS 5290.0107
ASN 5300.0083
ASN 5310.0086
PHE 5320.0058
PHE 5330.0051
SER 5340.0049
LEU 5350.0059
ASP 5360.0057
THR 5370.0059
PHE 5380.0072
PRO 5390.0083
TYR 5400.0074
LYS 5410.0085
CYS 5420.0144
LEU 5430.0127
ASN 5440.0170
SER 5450.0168
LEU 5460.0132
GLN 5470.0136
VAL 5480.0121
LEU 5490.0095
ASP 5500.0094
TYR 5510.0079
SER 5520.0090
LEU 5530.0089
ASN 5540.0077
HIS 5550.0071
ILE 5560.0068
MET 5570.0078
THR 5580.0092
SER 5590.0105
LYS 5600.0139
LYS 5610.0149
GLN 5620.0156
GLU 5630.0123
LEU 5640.0099
GLN 5650.0087
HIS 5660.0060
PHE 5670.0067
PRO 5680.0089
SER 5690.0118
SER 5700.0127
LEU 5710.0107
ALA 5720.0087
PHE 5730.0085
LEU 5740.0078
ASN 5750.0078
LEU 5760.0074
THR 5770.0054
GLN 5780.0068
ASN 5790.0083
ASP 5800.0098
PHE 5810.0084
ALA 5820.0171
CYS 5830.0080
THR 5840.0131
CYS 5850.0162
GLU 5860.0257
HIS 5870.0177
GLN 5880.0162
SER 5890.0210
PHE 5900.0148
LEU 5910.0095
GLN 5920.0154
TRP 5930.0146
ILE 5940.0087
LYS 5950.0133
ASP 5960.0167
GLN 5970.0112
ARG 5980.0091
GLN 5990.0088
LEU 6000.0065
LEU 6010.0042
VAL 6020.0058
GLU 6030.0037
VAL 6040.0058
GLU 6050.0075
ARG 6060.0053
MET 6070.0067
GLU 6080.0135
CYS 6090.0148
ALA 6100.0224
THR 6110.0257
PRO 6120.0311
SER 6130.0437
ASP 6140.0413
LYS 6150.0287
GLN 6160.0332
GLY 6170.0293
MET 6180.0237
PRO 6190.0176
VAL 6200.0079
LEU 6210.0139
SER 6220.0235
LEU 6230.0145
ASN 6240.0166
ILE 6250.0178
THR 6260.0217
CYS 6270.0226
GLU 10.0108
ALA 20.0061
ALA 30.0061
ALA 40.0094
LYS 50.0060
MET 60.0050
GLN 70.0071
ARG 80.0083
LEU 90.0073
VAL 100.0083
LEU 110.0047
LEU 120.0053
LEU 130.0055
ALA 140.0042
ILE 150.0035
SER 160.0019
LEU 170.0043
LEU 180.0055
LEU 190.0028
TYR 200.0033
GLN 210.0072
ASP 220.0064
LEU 230.0041
PRO 240.0051
VAL 250.0055
ARG 260.0060
SER 270.0053
GLU 280.0092
PHE 290.0112
GLU 300.0085
LEU 310.0092
ASP 320.0089
ARG 330.0074
ILE 340.0078
CYS 350.0083
GLY 360.0072
TYR 370.0091
GLY 380.0086
THR 390.0081
ALA 400.0068
ARG 410.0055
CYS 420.0028
ARG 430.0054
LYS 440.0109
LYS 450.0154
CYS 460.0152
ARG 470.0152
SER 480.0173
GLN 490.0153
GLU 500.0147
TYR 510.0182
ARG 520.0149
ILE 530.0165
GLY 540.0138
ARG 550.0094
CYS 560.0097
PRO 570.0153
ASN 580.0129
THR 590.0073
TYR 600.0025
ALA 610.0056
CYS 620.0065
CYS 630.0082
LEU 640.0106
ARG 650.0121
LYS 660.0156
TRP 670.0149
ASP 680.0114
GLU 690.0069
SER 700.0065
LEU 710.0087
LEU 720.0081
ASN 730.0041
ARG 740.0049
THR 750.0088
LYS 760.0070
PRO 770.0105
GLU 780.0099
ALA 790.0149
ALA 800.0171
ALA 810.0055
LYS 820.0059
LYS 830.0054
GLU 840.0064
MET 850.0062
ASN 860.0067
LEU 870.0056
SER 880.0053
VAL 890.0046
GLY 900.0046
LEU 910.0063
GLY 920.0103
GLY 930.0168
GLY 940.0147
SER 950.0127
ASN 960.0071
LEU 970.0070
SER 980.0074
VAL 990.0072
GLY 1000.0082
LEU 1010.0066
GLY 1020.0058
GLU 1030.0078
ILE 1040.0072
GLY 1050.0098
GLY 1060.0070
GLY 1070.0046
SER 1080.0017
LYS 1090.0007
LEU 1100.0026
LEU 1110.0072
ASP 1120.0095
ILE 1130.0075
ASN 1140.0111
LEU 1150.0093
GLY 1160.0179
ARG 1170.0196
GLY 1180.0194
GLY 1190.0150
GLY 1200.0098
SER 1210.0020
MET 1220.0023
VAL 1230.0018
ASP 1240.0025
LEU 1250.0025
THR 1260.0035
PHE 1270.0031
GLY 1280.0028
GLY 1290.0026
VAL 1300.0024
GLY 1310.0049
GLY 1320.0077
GLY 1330.0075
SER 1340.0061
THR 1350.0038
PHE 1360.0031
THR 1370.0028
PHE 1380.0029
PHE 1390.0030
PRO 1400.0029
LEU 1410.0084
VAL 1420.0115
ILE 1430.0143
GLY 1440.0192
GLY 1450.0214
GLY 1460.0259
SER 1470.0209
ASP 1480.0140
ALA 1490.0140
MET 1500.0099
TYR 1510.0075
LEU 1520.0060
GLY 1530.0056
PHE 1540.0044
ALA 1550.0042
ALA 1560.0081
GLY 1570.0080
GLY 1580.0115
GLY 1590.0107
SER 1600.0101
ALA 1610.0053
GLY 1620.0036
GLY 1630.0016
GLU 1640.0023
ASN 1650.0036
HIS 1660.0030
VAL 1670.0025
ALA 1680.0037
PHE 1690.0042
GLY 1700.0058
PRO 1710.0144
GLY 1720.0139
PRO 1730.0139
GLY 1740.0100
VAL 1750.0078
ASP 1760.0045
LEU 1770.0040
THR 1780.0041
PHE 1790.0068
GLY 1800.0099
GLY 1810.0166
VAL 1820.0145
GLN 1830.0082
PHE 1840.0078
ALA 1850.0059
MET 1860.0139
VAL 1870.0147
ASN 1880.0117
ASN 1890.0101
GLY 1900.0085
PRO 1910.0182
GLY 1920.0107
PRO 1930.0102
GLY 1940.0103
GLU 1950.0017
SER 1960.0036
PHE 1970.0024
THR 1980.0045
ALA 1990.0032
GLN 2000.0028
PRO 2010.0041
ALA 2020.0034
ASP 2030.0027
MET 2040.0023
GLN 2050.0030
ALA 2060.0113
GLY 2070.0063
ILE 2080.0053
LYS 2090.0026
GLY 2100.0072
PRO 2110.0088
GLY 2120.0058
PRO 2130.0119
GLY 2140.0115
GLY 2150.0098
SER 2160.0111
ILE 2170.0107
GLN 2180.0120
VAL 2190.0141
ILE 2200.0150
ASN 2210.0242
GLY 2220.0207
SER 2230.0152
THR 2240.0157
ILE 2250.0159
GLY 2260.0184
THR 2270.0170
GLY 2280.0182
SER 2290.0182
LYS 2300.0162
LYS 2310.0225
THR 2320.0288
ILE 2330.0189
LEU 2340.0213
ILE 2350.0198
TYR 2360.0165
SER 2370.0157
ILE 2380.0135
ILE 2390.0150
GLY 2400.0125
VAL 2410.0176
LYS 2420.0154
LYS 2430.0157
GLY 2440.0151
THR 2450.0138
LEU 2460.0150
ALA 2470.0155
TRP 2480.0216
ALA 2490.0234
ARG 2500.0304
THR 2510.0355
GLY 2520.0233
PHE 2530.0164
SER 2540.0125
PRO 2550.0157
ALA 2560.0278
LYS 2570.0222
LYS 2580.0259
LEU 2590.0286
ASN 2600.0343
ALA 2610.0288
GLY 2620.0226
VAL 2630.0240
VAL 2640.0179
ARG 2650.0227
VAL 2660.0233
PHE 2670.0222
PHE 2680.0221
LEU 2690.0211
ASN 2700.0206
GLN 2710.0108
LYS 2720.0085
LYS 2730.0099
ALA 2740.0124
LYS 2750.0115
ASP 2760.0133
VAL 2770.0127
LEU 2780.0114
ARG 2790.0112
LYS 2800.0122
THR 2810.0130
SER 2820.0076
ARG 2830.0071
PRO 2840.0030
MET 2850.0052
VAL 2860.0059
ASP 2870.0071
LEU 2880.0063
THR 2890.0068
PHE 2900.0048
GLY 2910.0080
GLY 2920.0079

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.